Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p32100 Brassica napus
A07p33610 Brassica napus
A07p34650 Brassica napus
Aa31LG2G3280 Aethionema arabicum
Aa31LG7G9190 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2304 Anthoceros agrestis
Actinidia15903 Actinidia chinensis
Actinidia17646 Actinidia chinensis
Ah.02g128160 Amaranthus hybridus
Ah.03g138440 Amaranthus hybridus
Ah.16g101480 Amaranthus hybridus
AL2G25020 Arabidopsis lyrata
AL2G27040 Arabidopsis lyrata
Aqoxy3G00185 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.NHVJ82 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UVUV6T Arachis hypogaea
AT1G66810 Arabidopsis thaliana
AT1G68200 Arabidopsis thaliana
ATR0053G009 Amborella trichopoda
Atru.chr1.1606 Acer truncatum
Atru.chr1.1657 Acer truncatum
Atru.chr11.276 Acer truncatum
Atru.chr11.290 Acer truncatum
AUR62002783 Chenopodium quinoa
AUR62014100 Chenopodium quinoa
AUR62023217 Chenopodium quinoa
AUR62023264 Chenopodium quinoa
AUR62044613 Chenopodium quinoa
BcaB03g15115 Brassica carinata
BcaB03g15231 Brassica carinata
BcaB03g15406 Brassica carinata
BcaC08g45986 Brassica carinata
BcaC08g46132 Brassica carinata
BcaC08g46250 Brassica carinata
BolC6t39102H Brassica oleracea
BolC6t39248H Brassica oleracea
BraA07t30989Z Brassica rapa
BraA07t31083Z Brassica rapa
C06p37810 Brassica napus
C06p40190 Brassica napus
C06p41800 Brassica napus
CAN.G1489.24 Capsicum annuum
CAN.G625.60 Capsicum annuum
CANSAT01G0788 Cannabis sativa
CANSAT78G2111 Cannabis sativa
CARHR058930 Cardamine hirsuta
CARHR060890 Cardamine hirsuta
Carub.0002s1301 Capsella rubella
Carub.0002s1469 Capsella rubella
Ca_11122_v3 Cicer arietinum L.
CBR_g24084 Chara braunii
CBR_g30215 Chara braunii
Cc07_g08480 Coffea canephora
Cc11_g09530 Coffea canephora
CDE05G0816 Ceratophyllum demersum
CDE05G3306 Ceratophyllum demersum
CDE10G0824 Ceratophyllum demersum
CDE11G0109 Ceratophyllum demersum
Cfa007886 Carpinus fangiana
Cfa015825 Carpinus fangiana
Ciclev10013897m.g Citrus clementina
Ciclev10015908m.g Citrus clementina
CiPaw.03G065400 Carya illinoinensis
CiPaw.05G243800 Carya illinoinensis
CiPaw.06G015900 Carya illinoinensis
ClCG01G005960 Citrullus lanatus
ClCG11G007630 Citrullus lanatus
COL.COLO4_06823 Corchorus olitorius
COL.COLO4_09381 Corchorus olitorius
Cpa.g.sc170.22 Carica papaya
Cpa.g.sc65.77 Carica papaya
Cre03.g172800 Chlamydomonas reinhardtii
CsaV3_2G033930 Cucumis sativus L.
CsaV3_5G028730 Cucumis sativus L.
CSS0007329 Camellia sinensis var. sinensis
CSS0020005 Camellia sinensis var. sinensis
CSS0040251 Camellia sinensis var. sinensis
DCAR_007271 Daucus carota
DCAR_010715 Daucus carota
Dinv16151 Davidia involucrata
Dinv31582 Davidia involucrata
Dinv33968 Davidia involucrata
Dinv34790 Davidia involucrata
Duzib133G0525 Durio zibethinus
Duzib138G1323 Durio zibethinus
Duzib248G1261 Durio zibethinus
Duzib268G0186 Durio zibethinus
ECA233G2747 Erigeron canadensis
ECA238G2180 Erigeron canadensis
EL10Ac2g04521 Beta vulgaris
EL10Ac6g14280 Beta vulgaris
Eucgr.F02796 Eucalyptus grandis
FAN07G0601 Fragaria x ananassa
FAN07G1742 Fragaria x ananassa
FAN12G2075 Fragaria x ananassa
FAN12G3159 Fragaria x ananassa
FAN17G0878 Fragaria x ananassa
FAN17G2494 Fragaria x ananassa
FAN22G1416 Fragaria x ananassa
FvH4_3g10371 Fragaria vesca
FvH4_4g11300 Fragaria vesca
FvH4_4g26520 Fragaria vesca
Glyma.10G269300 Glycine max
Glyma.20G121800 Glycine max
Gohir.A03G149100 Gossypium hirsutum
Gohir.A05G314800 Gossypium hirsutum
Gohir.A07G074800 Gossypium hirsutum
Gohir.A12G055200 Gossypium hirsutum
Gohir.A12G141300 Gossypium hirsutum
Gohir.D02G172100 Gossypium hirsutum
Gohir.D05G316100 Gossypium hirsutum
Gohir.D07G079500 Gossypium hirsutum
Gohir.D12G054600 Gossypium hirsutum
Gohir.D12G146200 Gossypium hirsutum
Gorai.001G084100 Gossypium raimondii
Gorai.005G193700 Gossypium raimondii
Gorai.008G057400 Gossypium raimondii
Gorai.008G157500 Gossypium raimondii
Gorai.009G338500 Gossypium raimondii
GSVIVG01011819001 Vitis vinifera
GSVIVG01030969001 Vitis vinifera
HanXRQChr05g0152241 Helianthus annuus
HanXRQChr06g0180311 Helianthus annuus
HanXRQChr08g0213201 Helianthus annuus
HanXRQChr08g0225001 Helianthus annuus
HanXRQChr14g0459191 Helianthus annuus
Haze_00668 Corylus avellana
Haze_14191 Corylus avellana
Hma1.2p1_0114F.1_g055580 Hydrangea macrophylla
Hma1.2p1_0500F.1_g167190 Hydrangea macrophylla
HPP92_008058 Vanilla planifolia
Hund20726 Selenicereus undatus
Lalb_Chr02g0145711 Lupinus albus
Lalb_Chr06g0165801 Lupinus albus
Lj3A878T25 Lonicera japonica
Lj4C183G7 Lonicera japonica
Lj5g0009843 Lotus japonicus
Lj6C752T4 Lonicera japonica
Lsat_1_v5_gn_2_80881 Lactuca sativa
Lsat_1_v5_gn_8_42221 Lactuca sativa
Manes.01G113200 Manihot esculenta
Manes.02G072100 Manihot esculenta
Manes.14G108300 Manihot esculenta
MBI16_g14291_MAGBIO Magnolia biondii
MCO11G228 Micromonas commoda
MD09G1257000 Malus domestica
MD13G1034100 Malus domestica
MD16G1035800 Malus domestica
MD17G1250600 Malus domestica
Medtr1g109320 Medicago truncatula
Medtr5g090040 Medicago truncatula
MELO3C005335.2 Cucumis melo
MELO3C008166.2 Cucumis melo
Migut.H00243 Erythranthe guttata
Migut.L00491 Erythranthe guttata
Migut.L01008 Erythranthe guttata
MSTRG.15309 Avicennia marina
MSTRG.867 Avicennia marina
Nitab4.5_0000350g0010 Nicotiana tabacum
Nitab4.5_0000753g0170 Nicotiana tabacum
Nitab4.5_0003213g0030 Nicotiana tabacum
Nitab4.5_0003886g0100 Nicotiana tabacum
Nn3g17973 Nelumbo nucifera
Nn4g23978 Nelumbo nucifera
Oeu007187.1 Olea europaea
Oeu041982.1 Olea europaea
Oeu050388.1 Olea europaea
Oeu053808.1 Olea europaea
Os01g0645000 Oryza sativa ssp. japonica
Os03g0301500 Oryza sativa ssp. japonica
Os05g0576300 Oryza sativa ssp. japonica
Peaxi162Scf00205g01217 Petunia axillaris
Peaxi162Scf00877g00126 Petunia axillaris
PGR004G1595 Punica granatum
PGR142G4062 Punica granatum
PGSC0003DMG400030567 Solanum tuberosum
PGSC0003DMG400030591 Solanum tuberosum
PGSC0003DMG400037361 Solanum tuberosum
Phvul.007G033200 Phaseolus vulgaris
Potri.004G095100 Populus trichocarpa
Potri.010G118700 Populus trichocarpa
Potri.017G119900 Populus trichocarpa
Pp3c1_21370 Physcomitrium patens
Pp3c2_17030 Physcomitrium patens
PRCOL_00004796 Prasinoderma coloniale
Prupe.1G318500 Prunus persica
Prupe.3G149200 Prunus persica
Psat6g223880 Pisum sativum
Psat6g223920 Pisum sativum
Psat6g223960 Pisum sativum
PSO017G4235 Papaver somniferum
PSO017G5741 Papaver somniferum
PSO063G1063 Papaver somniferum
PSO063G1320 Papaver somniferum
PSO478G4118 Papaver somniferum
QL01p003296 Quercus lobata
QL01p003323 Quercus lobata
QL01p003332 Quercus lobata
QL02p050155 Quercus lobata
QL02p050161 Quercus lobata
RcHm_v2.0_Chr4g0407541 Rosa chinensis
RcHm_v2.0_Chr4g0434161 Rosa chinensis
Rhsim08G0084000 Rhododendron simsii
Sabra02G0111200 Salix brachista
Sabra04G0064200 Salix brachista
Sabra04G0064300 Salix brachista
Sabra08G0086400 Salix brachista
Sabra10G0089300 Salix brachista
Sabra11G0118000 Salix brachista
Sabra15G0032800 Salix brachista
Sabra17G0000300 Salix brachista
Sabra17G0098900 Salix brachista
Sabra19G0020600 Salix brachista
SalBow3G4526 Salvia bowleyana
SalBow5G3023 Salvia bowleyana
SalBow8G1708 Salvia bowleyana
Sc07g0008500 Simmondsia chinensis
Sc11g0008490 Simmondsia chinensis
Sed0001518 Sechium edule
Sed0011276 Sechium edule
Sed0018266 Sechium edule
SGA_v2.0_scaffold202G41474 Striga asiatica
SGA_v2.0_scaffold38G15021 Striga asiatica
SHI16255 Sapria himalayana
SMO198G0058 Selaginella moellendorffii
Solyc02g086430.4 Solanum lycopersicum
Solyc05g008670.3 Solanum lycopersicum
Sopen02g031140 Solanum pennellii
Sopen05g004490 Solanum pennellii
Sp5g23210 Schrenkiella parvula
SpUn1100_0010 Schrenkiella parvula
TAR365G1132 Trochodendron aralioides
TAR374G0062 Trochodendron aralioides
TAR622G0715 Trochodendron aralioides
THA.LOC104805587 Tarenaya hassleriana
THA.LOC104822595 Tarenaya hassleriana
THA.LOC104827709 Tarenaya hassleriana
Thecc.02G219500 Theobroma cacao
Thecc.04G127900 Theobroma cacao
Thecc.09G029900 Theobroma cacao
Thhalv10018817m.g Eutrema salsugineum
Thhalv10018942m.g Eutrema salsugineum
TPR.G4857 Trifolium pratense
TWI53G1128 Tripterygium wilfordii
TWI74G1359 Tripterygium wilfordii
TWI79G0443 Tripterygium wilfordii
unitig_52.g17379 Utricularia gibba
unitig_578.g16741 Utricularia gibba
vmacro18065 Vaccinium macrocarpon
VMungo0720G1339 Vigna mungo
Zm00001eb014140 Zea mays
Zm00001eb296640 Zea mays
Zm00001eb346950 Zea mays
Zm00001eb359300 Zea mays

User provided reference genes

Program Settings