Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p06170 Brassica napus
A01p38190 Brassica napus
A03p39580 Brassica napus
A03p61250 Brassica napus
Aa31LG2G17770 Aethionema arabicum
Aa31LG8G3090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.142 Anthoceros agrestis
Actinidia01735 Actinidia chinensis
Actinidia14600 Actinidia chinensis
Actinidia15669 Actinidia chinensis
Actinidia15751 Actinidia chinensis
Ah.01g020520 Amaranthus hybridus
Ah.10g035780 Amaranthus hybridus
Ah.16g104530 Amaranthus hybridus
AL3G28560 Arabidopsis lyrata
AL4G16780 Arabidopsis lyrata
AL7G19700 Arabidopsis lyrata
Aqoxy7G01657 Aquilegia oxysepala
Aqoxy7G03638 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DLQB4B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E3M3ZX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HPR99D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XRJX2S Arachis hypogaea
AT2G25350 Arabidopsis thaliana
AT3G15920 Arabidopsis thaliana
AT4G32160 Arabidopsis thaliana
ATR0320G018 Amborella trichopoda
ATR0320G044 Amborella trichopoda
Atru.chr1.2893 Acer truncatum
Atru.chr7.2445 Acer truncatum
Atru.chr7.2446 Acer truncatum
AUR62011508 Chenopodium quinoa
AUR62012412 Chenopodium quinoa
AUR62016326 Chenopodium quinoa
AUR62024191 Chenopodium quinoa
AUR62031534 Chenopodium quinoa
BcaB04g20896 Brassica carinata
BcaC09g48569 Brassica carinata
BcaC09g52002 Brassica carinata
BcaNung03142 Brassica carinata
BolC1t00674H Brassica oleracea
BolC1t04806H Brassica oleracea
BolC3t17075H Brassica oleracea
BolC7t46358H Brassica oleracea
BraA01t00583Z Brassica rapa
BraA01t03877Z Brassica rapa
BraA03t15169Z Brassica rapa
C01p06800 Brassica napus
C01p48460 Brassica napus
C03p47950 Brassica napus
C07p59100 Brassica napus
CAN.G1115.1 Capsicum annuum
CAN.G407.71 Capsicum annuum
CAN.G985.1 Capsicum annuum
CAN.G985.3 Capsicum annuum
CANSAT25G2957 Cannabis sativa
CANSAT56G0329 Cannabis sativa
CARHR091060 Cardamine hirsuta
CARHR240090 Cardamine hirsuta
CARHR292930 Cardamine hirsuta
Carub.0003s1566 Capsella rubella
Carub.0007s0840 Capsella rubella
Ca_01050_v3 Cicer arietinum L.
Ca_15746_v3 Cicer arietinum L.
CBR_g22383 Chara braunii
Cc04_g04510 Coffea canephora
Cc08_g00480 Coffea canephora
CDE03G0280 Ceratophyllum demersum
CDE04G3040 Ceratophyllum demersum
Cfa001951 Carpinus fangiana
Cfa013131 Carpinus fangiana
Ciclev10007589m.g Citrus clementina
Ciclev10024984m.g Citrus clementina
CiPaw.01G249300 Carya illinoinensis
CiPaw.02G157900 Carya illinoinensis
CiPaw.07G224300 Carya illinoinensis
ClCG05G016800 Citrullus lanatus
ClCG09G002970 Citrullus lanatus
COL.COLO4_11913 Corchorus olitorius
COL.COLO4_18872 Corchorus olitorius
Cpa.g.sc167.2 Carica papaya
Cpa.g.sc217.13 Carica papaya
Cre11.g467681 Chlamydomonas reinhardtii
CsaV3_3G046310 Cucumis sativus L.
CsaV3_7G032310 Cucumis sativus L.
CSS0040579 Camellia sinensis var. sinensis
DCAR_001533 Daucus carota
DCAR_006212 Daucus carota
DCAR_021351 Daucus carota
Dinv08630 Davidia involucrata
Dinv18209 Davidia involucrata
Dinv30618 Davidia involucrata
Duzib150G1316 Durio zibethinus
Duzib160G0818 Durio zibethinus
Duzib192G0949 Durio zibethinus
ECA232G1646 Erigeron canadensis
ECA246G1400 Erigeron canadensis
EL10Ac2g04199 Beta vulgaris
EL10Ac9g21881 Beta vulgaris
Eucgr.C01726 Eucalyptus grandis
Eucgr.E02514 Eucalyptus grandis
Eucgr.F03886 Eucalyptus grandis
Eucgr.F03888 Eucalyptus grandis
FAN02G0115 Fragaria x ananassa
FAN05G1325 Fragaria x ananassa
FAN09G0304 Fragaria x ananassa
FAN14G2212 Fragaria x ananassa
FAN15G2469 Fragaria x ananassa
FAN20G0785 Fragaria x ananassa
FAN24G0091 Fragaria x ananassa
FAN27G2745 Fragaria x ananassa
FvH4_2g28930 Fragaria vesca
FvH4_6g29460 Fragaria vesca
Glyma.04G065700 Glycine max
Glyma.06G067100 Glycine max
Glyma.13G366600 Glycine max
Glyma.15G006600 Glycine max
Gohir.A06G098700 Gossypium hirsutum
Gohir.A07G029000 Gossypium hirsutum
Gohir.A10G072900 Gossypium hirsutum
Gohir.D06G100800 Gossypium hirsutum
Gohir.D07G033000 Gossypium hirsutum
Gohir.D10G078100 Gossypium hirsutum
Gorai.001G034600 Gossypium raimondii
Gorai.010G115900 Gossypium raimondii
Gorai.011G084800 Gossypium raimondii
GSVIVG01017363001 Vitis vinifera
GSVIVG01035873001 Vitis vinifera
HanXRQChr02g0058611 Helianthus annuus
HanXRQChr16g0510741 Helianthus annuus
Haze_16574 Corylus avellana
Haze_16576 Corylus avellana
Haze_21501 Corylus avellana
Haze_21506 Corylus avellana
Hma1.2p1_0043F.1_g025850 Hydrangea macrophylla
Hma1.2p1_0354F.1_g133640 Hydrangea macrophylla
Hma1.2p1_1339F.1_g276610 Hydrangea macrophylla
HPP92_023796 Vanilla planifolia
Hund04504 Selenicereus undatus
Hund25561 Selenicereus undatus
Hund30133 Selenicereus undatus
Lalb_Chr11g0063681 Lupinus albus
Lalb_Chr22g0350831 Lupinus albus
Lalb_Chr23g0268461 Lupinus albus
Lalb_Chr24g0395441 Lupinus albus
Lj1C756G2 Lonicera japonica
Lj1g0011228 Lotus japonicus
Lj3g0003229 Lotus japonicus
Lj8C705G2 Lonicera japonica
Lsat_1_v5_gn_4_87600 Lactuca sativa
Lsat_1_v5_gn_4_87620 Lactuca sativa
Lsat_1_v5_gn_5_30220 Lactuca sativa
Manes.03G013500 Manihot esculenta
Manes.04G111600 Manihot esculenta
Manes.16G123100 Manihot esculenta
Mapoly0035s0138 Marchantia polymorpha
MBI03_g15243_MAGBIO Magnolia biondii
MBI10_g19613_MAGBIO Magnolia biondii
MBI12_g45456_MAGBIO Magnolia biondii
MBI15_g32305_MAGBIO Magnolia biondii
MBI17_g29796_MAGBIO Magnolia biondii
MD08G1155500 Malus domestica
MD15G1126500 Malus domestica
MD17G1213900 Malus domestica
Medtr2g104070 Medicago truncatula
Medtr3g106770 Medicago truncatula
MELO3C003708.2 Cucumis melo
MELO3C023429.2 Cucumis melo
Migut.A00032 Erythranthe guttata
Migut.I00753 Erythranthe guttata
MSTRG.11149 Avicennia marina
Nitab4.5_0002042g0030 Nicotiana tabacum
Nitab4.5_0002408g0040 Nicotiana tabacum
Nitab4.5_0003463g0020 Nicotiana tabacum
Nitab4.5_0008560g0020 Nicotiana tabacum
Nn8g40760 Nelumbo nucifera
Oeu010900.1 Olea europaea
Oeu056068.1 Olea europaea
Oeu060147.1 Olea europaea
Os06g0643000 Oryza sativa ssp. japonica
Peaxi162Scf00332g00539 Petunia axillaris
Peaxi162Scf01131g00013 Petunia axillaris
PGR031G0813 Punica granatum
PGR102G1641 Punica granatum
PGSC0003DMG400000644 Solanum tuberosum
Phvul.005G179100 Phaseolus vulgaris
Phvul.009G092100 Phaseolus vulgaris
Potri.001G201900 Populus trichocarpa
Potri.006G256000 Populus trichocarpa
Potri.018G026000 Populus trichocarpa
Pp3c1_14920 Physcomitrium patens
Pp3c2_21590 Physcomitrium patens
PRCOL_00003199 Prasinoderma coloniale
Prupe.1G482400 Prunus persica
Prupe.3G089800 Prunus persica
Psat5g029320 Pisum sativum
Psat5g303240 Pisum sativum
Psat5g303280 Pisum sativum
PSO210G1992 Papaver somniferum
PSO210G7357 Papaver somniferum
QL02p021402 Quercus lobata
QL05p030652 Quercus lobata
RcHm_v2.0_Chr2g0134961 Rosa chinensis
RcHm_v2.0_Chr6g0297751 Rosa chinensis
Rhsim02G0022500 Rhododendron simsii
Rhsim07G0159300 Rhododendron simsii
Rhsim08G0212100 Rhododendron simsii
Sabra01G0159500 Salix brachista
Sabra06G0200300 Salix brachista
Sabra18G0028500 Salix brachista
SalBow2G2196 Salvia bowleyana
SalBow4G1113 Salvia bowleyana
Sc09g0008180 Simmondsia chinensis
Sc10g0006020 Simmondsia chinensis
Sed0003168 Sechium edule
Sed0017615 Sechium edule
Sed0021690 Sechium edule
SEGI_30554 Sequoiadendron giganteum
SEGI_31771 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09108 Striga asiatica
SGA_v2.0_scaffold244G44360 Striga asiatica
SGA_v2.0_scaffold64G21951 Striga asiatica
SHI11230 Sapria himalayana
SHI18543 Sapria himalayana
SMO141G0033 Selaginella moellendorffii
Solyc03g116820.4 Solanum lycopersicum
Solyc03g116830.4 Solanum lycopersicum
Solyc08g042120.1 Solanum lycopersicum
Solyc08g042130.2 Solanum lycopersicum
Sopen03g035750 Solanum pennellii
Sopen08g012640 Solanum pennellii
Sp3g14240 Schrenkiella parvula
Sp7g29950 Schrenkiella parvula
TAR625G0440 Trochodendron aralioides
TAR625G0548 Trochodendron aralioides
TAR636G3025 Trochodendron aralioides
THA.LOC104818021 Tarenaya hassleriana
THA.LOC104818613 Tarenaya hassleriana
Thecc.06G030300 Theobroma cacao
Thecc.09G023100 Theobroma cacao
Thhalv10020136m.g Eutrema salsugineum
Thhalv10024530m.g Eutrema salsugineum
TPR.G3158 Trifolium pratense
TPR.G37279 Trifolium pratense
TWI12G0825 Tripterygium wilfordii
TWI34G0457 Tripterygium wilfordii
TWI75G1220 Tripterygium wilfordii
unitig_748.g7554 Utricularia gibba
unitig_748.g7555 Utricularia gibba
vmacro05172 Vaccinium macrocarpon
vmacro19008 Vaccinium macrocarpon
VMungo1080G0605 Vigna mungo
VMungo1309G2073 Vigna mungo
Zm00001eb275380 Zea mays
Zm00001eb387110 Zea mays

User provided reference genes

Program Settings