Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36980 Brassica napus
A03p40150 Brassica napus
A07p25270 Brassica napus
Aa31LG10G17330 Aethionema arabicum
Aa31LG8G4290 Aethionema arabicum
Aa31LG8G4300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4148 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.434 Anthoceros agrestis
Actinidia01055 Actinidia chinensis
Actinidia18501 Actinidia chinensis
Actinidia23255 Actinidia chinensis
Ah.03g136450 Amaranthus hybridus
Ah.09g235230 Amaranthus hybridus
Ah.16g100690 Amaranthus hybridus
AL3G30430 Arabidopsis lyrata
AL5G43230 Arabidopsis lyrata
Aqoxy1G00319 Aquilegia oxysepala
Aqoxy5G02770 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.00A31M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4SUD33 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KYFF3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UW2SL3 Arachis hypogaea
AT3G17365 Arabidopsis thaliana
AT3G60910 Arabidopsis thaliana
ATR0680G068 Amborella trichopoda
ATR0796G024 Amborella trichopoda
Atru.chr11.2541 Acer truncatum
Atru.chr4.3128 Acer truncatum
AUR62002567 Chenopodium quinoa
AUR62009425 Chenopodium quinoa
AUR62023104 Chenopodium quinoa
AUR62029989 Chenopodium quinoa
BcaB02g07393 Brassica carinata
BcaB04g18938 Brassica carinata
BcaB04g20847 Brassica carinata
BcaC01g03769 Brassica carinata
BcaC07g40610 Brassica carinata
BcaC07g42648 Brassica carinata
BcaC08g45094 Brassica carinata
BcaC08g45095 Brassica carinata
BcaC09g48692 Brassica carinata
BolC1t04660H Brassica oleracea
BolC3t17151H Brassica oleracea
BolC3t17159H Brassica oleracea
BolC6t37875H Brassica oleracea
BolC8t51173H Brassica oleracea
BraA01t03758Z Brassica rapa
BraA03t13165Z Brassica rapa
BraA07t30169Z Brassica rapa
C01p46880 Brassica napus
C03p48720 Brassica napus
C03p48770 Brassica napus
C06p27030 Brassica napus
C08p35850 Brassica napus
CAN.G909.16 Capsicum annuum
CANSAT80G0975 Cannabis sativa
CARHR092690 Cardamine hirsuta
CARHR171300 Cardamine hirsuta
Carub.0003s1708 Capsella rubella
Carub.0005s2766 Capsella rubella
Ca_26317_v3 Cicer arietinum L.
Cc02_g28990 Coffea canephora
Cc03_g00270 Coffea canephora
CDE02G2980 Ceratophyllum demersum
CDE02G4048 Ceratophyllum demersum
CDE08G0966 Ceratophyllum demersum
CDE09G0304 Ceratophyllum demersum
Cfa010823 Carpinus fangiana
Ciclev10005764m.g Citrus clementina
Ciclev10032531m.g Citrus clementina
CiPaw.01G131000 Carya illinoinensis
CiPaw.13G008400 Carya illinoinensis
CiPaw.14G003800 Carya illinoinensis
ClCG05G006820 Citrullus lanatus
ClCG09G004460 Citrullus lanatus
COL.COLO4_12330 Corchorus olitorius
COL.COLO4_34543 Corchorus olitorius
Cpa.g.sc125.56 Carica papaya
Cre01.g015700 Chlamydomonas reinhardtii
Cre06.g260150 Chlamydomonas reinhardtii
Cre06.g305850 Chlamydomonas reinhardtii
Cre08.g362700 Chlamydomonas reinhardtii
Cre10.g440650 Chlamydomonas reinhardtii
Cre10.g446300 Chlamydomonas reinhardtii
CsaV3_3G015470 Cucumis sativus L.
CsaV3_7G030680 Cucumis sativus L.
CSS0017271 Camellia sinensis var. sinensis
CSS0024323 Camellia sinensis var. sinensis
CSS0031205 Camellia sinensis var. sinensis
CSS0035182 Camellia sinensis var. sinensis
DCAR_002540 Daucus carota
DCAR_028617 Daucus carota
DCAR_031812 Daucus carota
Dinv07427 Davidia involucrata
Dinv15631 Davidia involucrata
Duzib133G1529 Durio zibethinus
Duzib151G1114 Durio zibethinus
ECA233G1620 Erigeron canadensis
ECA248G3893 Erigeron canadensis
EL10Ac2g04381 Beta vulgaris
EL10Ac3g06268 Beta vulgaris
Eucgr.G03283 Eucalyptus grandis
Eucgr.H04109 Eucalyptus grandis
FAN01G1665 Fragaria x ananassa
FAN03G0468 Fragaria x ananassa
FAN03G1555 Fragaria x ananassa
FAN03G1637 Fragaria x ananassa
FAN06G2492 Fragaria x ananassa
FAN07G1777 Fragaria x ananassa
FAN10G3609 Fragaria x ananassa
FAN12G3805 Fragaria x ananassa
FAN17G2002 Fragaria x ananassa
FvH4_4g21180 Fragaria vesca
FvH4_7g01670 Fragaria vesca
Glyma.09G051400 Glycine max
Glyma.09G226600 Glycine max
Glyma.12G010200 Glycine max
Glyma.15G157700 Glycine max
Gohir.A02G057300 Gossypium hirsutum
Gohir.A08G141400 Gossypium hirsutum
Gohir.D02G063100 Gossypium hirsutum
Gohir.D08G162500 Gossypium hirsutum
Gohir.D08G197540 Gossypium hirsutum
Gorai.004G168900 Gossypium raimondii
Gorai.005G071000 Gossypium raimondii
GSVIVG01001439001 Vitis vinifera
GSVIVG01017672001 Vitis vinifera
HanXRQChr01g0015671 Helianthus annuus
HanXRQChr06g0179711 Helianthus annuus
HanXRQChr13g0402711 Helianthus annuus
Haze_00796 Corylus avellana
Hma1.2p1_0269F.1_g107770 Hydrangea macrophylla
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla
Hma1.2p1_1160F.1_g262460 Hydrangea macrophylla
HPP92_001357 Vanilla planifolia
HPP92_001394 Vanilla planifolia
HPP92_012777 Vanilla planifolia
Hund02960 Selenicereus undatus
Hund22622 Selenicereus undatus
Lalb_Chr01g0000511 Lupinus albus
Lalb_Chr15g0083771 Lupinus albus
Lalb_Chr20g0114281 Lupinus albus
Lj3g0020648 Lotus japonicus
Lj6A699T65 Lonicera japonica
Lj6g0010362 Lotus japonicus
Lj7C576G5 Lonicera japonica
Lj9C642T3 Lonicera japonica
Lsat_1_v5_gn_1_102320 Lactuca sativa
Lsat_1_v5_gn_6_71361 Lactuca sativa
Manes.07G011700 Manihot esculenta
Manes.10G135200 Manihot esculenta
Manes.15G003900 Manihot esculenta
Mapoly0110s0031 Marchantia polymorpha
Mapoly0120s0031 Marchantia polymorpha
MBI18_g28906_MAGBIO Magnolia biondii
MCO07G541 Micromonas commoda
MD02G1301500 Malus domestica
MD07G1022400 Malus domestica
MD13G1144200 Malus domestica
Medtr0003s0620 Medicago truncatula
Medtr2g035820 Medicago truncatula
MELO3C006746.2 Cucumis melo
MELO3C023588.2 Cucumis melo
Migut.G00010 Erythranthe guttata
Migut.N01803 Erythranthe guttata
Migut.O00394 Erythranthe guttata
MSTRG.10181 Avicennia marina
MSTRG.28048 Avicennia marina
MSTRG.5046 Avicennia marina
Nitab4.5_0004222g0030 Nicotiana tabacum
Nitab4.5_0011487g0010 Nicotiana tabacum
Nn2g15180 Nelumbo nucifera
Nn3g21877 Nelumbo nucifera
Nn7g36345 Nelumbo nucifera
Oeu012209.1 Olea europaea
Oeu027367.2 Olea europaea
Oeu049472.3 Olea europaea
Os05g0392200 Oryza sativa ssp. japonica
Os07g0656800 Oryza sativa ssp. japonica
Os08g0517600 Oryza sativa ssp. japonica
Peaxi162Scf00126g01133 Petunia axillaris
Peaxi162Scf01108g00331 Petunia axillaris
PGR031G3541 Punica granatum
PGSC0003DMG400006770 Solanum tuberosum
Phvul.009G242300 Phaseolus vulgaris
Phvul.011G010500 Phaseolus vulgaris
Potri.001G261000 Populus trichocarpa
Potri.009G055600 Populus trichocarpa
Potri.010G153200 Populus trichocarpa
Pp3c19_12220 Physcomitrium patens
Pp3c22_16090 Physcomitrium patens
Pp3c4_11910 Physcomitrium patens
Pp3c7_22960 Physcomitrium patens
PRCOL_00005987 Prasinoderma coloniale
PRCOL_00006385 Prasinoderma coloniale
Prupe.1G108600 Prunus persica
Prupe.2G023000 Prunus persica
Psat5g074720 Pisum sativum
Psat7g146520 Pisum sativum
PSO170G2192 Papaver somniferum
PSO170G4185 Papaver somniferum
PSO339G1014 Papaver somniferum
PSO384G1250 Papaver somniferum
QL04p010460 Quercus lobata
QL06p013820 Quercus lobata
RcHm_v2.0_Chr1g0318081 Rosa chinensis
RcHm_v2.0_Chr1g0318181 Rosa chinensis
RcHm_v2.0_Chr4g0426751 Rosa chinensis
Rhsim07G0059300 Rhododendron simsii
Sabra09G0040700 Salix brachista
Sabra10G0117800 Salix brachista
Sabra16G0159600 Salix brachista
SalBow6G5965 Salvia bowleyana
SalBow8G2791 Salvia bowleyana
Sc14g0004970 Simmondsia chinensis
Sc19g0002130 Simmondsia chinensis
Sed0003035 Sechium edule
Sed0020024 Sechium edule
Sed0026277 Sechium edule
SEGI_10513 Sequoiadendron giganteum
SEGI_29949 Sequoiadendron giganteum
SEGI_33867 Sequoiadendron giganteum
SGA_v2.0_scaffold157G37379 Striga asiatica
SGA_v2.0_scaffold354G49751 Striga asiatica
SMO013G0026 Selaginella moellendorffii
SMO114G0028 Selaginella moellendorffii
SMO117G0362 Selaginella moellendorffii
SMO134G0226 Selaginella moellendorffii
SMO228G0105 Selaginella moellendorffii
Solyc01g088000.4 Solanum lycopersicum
Sopen01g034900 Solanum pennellii
Sp3g15540 Schrenkiella parvula
Sp5g02340 Schrenkiella parvula
TAR362G0783 Trochodendron aralioides
TAR623G0553 Trochodendron aralioides
TAR623G0984 Trochodendron aralioides
TAR633G0568 Trochodendron aralioides
THA.LOC104801972 Tarenaya hassleriana
THA.LOC104824724 Tarenaya hassleriana
Thecc.01G404400 Theobroma cacao
Thecc.04G310300 Theobroma cacao
Thecc.08G163900 Theobroma cacao
Thhalv10006192m.g Eutrema salsugineum
Thhalv10021424m.g Eutrema salsugineum
TPR.G31843 Trifolium pratense
TPR.G8364 Trifolium pratense
TWI53G0867 Tripterygium wilfordii
TWI73G0483 Tripterygium wilfordii
unitig_22.g5874 Utricularia gibba
vmacro07998 Vaccinium macrocarpon
vmacro13703 Vaccinium macrocarpon
VMungo1127G1560 Vigna mungo
VMungo1309G1436 Vigna mungo
Zm00001eb035790 Zea mays
Zm00001eb287290 Zea mays
Zm00001eb329570 Zea mays

User provided reference genes

Program Settings