Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01920 Brassica napus
A02p01930 Brassica napus
A03p05970 Brassica napus
A03p05980 Brassica napus
A10p24810 Brassica napus
Aa31LG3G14300 Aethionema arabicum
Aa31LG3G14310 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3529 Anthoceros agrestis
Actinidia19552 Actinidia chinensis
Actinidia22114 Actinidia chinensis
Actinidia30584 Actinidia chinensis
Actinidia33997 Actinidia chinensis
Ah.03g136620 Amaranthus hybridus
AL6G24050 Arabidopsis lyrata
AL6G24060 Arabidopsis lyrata
Aqoxy5G02887 Aquilegia oxysepala
Aqoxy5G03099 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0Y5YUA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.98PBN3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HKV0TA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HV7PLY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J1TW9H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WM4U2E Arachis hypogaea
AT5G13430 Arabidopsis thaliana
AT5G13440 Arabidopsis thaliana
ATR0071G001 Amborella trichopoda
ATR0071G015 Amborella trichopoda
ATR0083G053 Amborella trichopoda
Atru.chr12.1424 Acer truncatum
Atru.chr6.2698 Acer truncatum
AUR62017433 Chenopodium quinoa
AUR62037821 Chenopodium quinoa
BcaB01g01714 Brassica carinata
BcaB01g05359 Brassica carinata
BcaB01g05360 Brassica carinata
BcaB02g06888 Brassica carinata
BcaC04g19116 Brassica carinata
BcaC04g19117 Brassica carinata
BcaNung01154 Brassica carinata
BcaNung01155 Brassica carinata
BcaNung01883 Brassica carinata
BcaNung01884 Brassica carinata
BolC2t06555H Brassica oleracea
BolC2t06556H Brassica oleracea
BolC3t13200H Brassica oleracea
BolC9t59207H Brassica oleracea
BraA02t05165Z Brassica rapa
BraA02t05166Z Brassica rapa
BraA03t09934Z Brassica rapa
BraA03t09935Z Brassica rapa
BraA10t44545Z Brassica rapa
C02p06140 Brassica napus
C02p06150 Brassica napus
C03p07010 Brassica napus
C03p07020 Brassica napus
C09p63630 Brassica napus
C09p63660 Brassica napus
CAN.G849.6 Capsicum annuum
CANSAT21G1327 Cannabis sativa
CARHR199990 Cardamine hirsuta
CARHR200000 Cardamine hirsuta
Carub.0006s1159 Capsella rubella
Carub.0006s1160 Capsella rubella
Ca_08201_v3 Cicer arietinum L.
CBR_g19567 Chara braunii
Cc07_g01320 Coffea canephora
Cc11_g14980 Coffea canephora
CDE05G2251 Ceratophyllum demersum
Cfa007141 Carpinus fangiana
Cfa023608 Carpinus fangiana
Ciclev10005587m.g Citrus clementina
Ciclev10016224m.g Citrus clementina
CiPaw.03G001500 Carya illinoinensis
CiPaw.04G001200 Carya illinoinensis
CiPaw.04G001300 Carya illinoinensis
ClCG01G007840 Citrullus lanatus
COL.COLO4_13378 Corchorus olitorius
COL.COLO4_36000 Corchorus olitorius
Cpa.g.sc38.72 Carica papaya
Cpa.g.sc70.61 Carica papaya
Cpa.g.sc70.62 Carica papaya
Cre01.g051900 Chlamydomonas reinhardtii
CsaV3_5G024910 Cucumis sativus L.
CsaV3_5G024920 Cucumis sativus L.
CSS0001021 Camellia sinensis var. sinensis
CSS0015326 Camellia sinensis var. sinensis
CSS0030064 Camellia sinensis var. sinensis
DCAR_014467 Daucus carota
DCAR_021818 Daucus carota
Dinv05542 Davidia involucrata
Dinv09235 Davidia involucrata
Dinv16451 Davidia involucrata
Dinv33277 Davidia involucrata
Duzib052G1078 Durio zibethinus
Duzib147G1564 Durio zibethinus
Duzib264G0401 Durio zibethinus
ECA246G2728 Erigeron canadensis
ECA246G5046 Erigeron canadensis
EL10Ac6g13408 Beta vulgaris
Eucgr.B03562 Eucalyptus grandis
Eucgr.I01599 Eucalyptus grandis
FAN02G2326 Fragaria x ananassa
FAN05G2340 Fragaria x ananassa
FAN07G0338 Fragaria x ananassa
FAN09G3731 Fragaria x ananassa
FAN14G4621 Fragaria x ananassa
FvH4_4g22600 Fragaria vesca
FvH4_6g54320 Fragaria vesca
Glyma.02G066400 Glycine max
Glyma.02G066500 Glycine max
Glyma.16G147600 Glycine max
Gohir.A01G020500 Gossypium hirsutum
Gohir.A11G063700 Gossypium hirsutum
Gohir.D06G136200 Gossypium hirsutum
Gohir.D07G174100 Gossypium hirsutum
Gohir.D11G068000 Gossypium hirsutum
Gohir.D12G090800 Gossypium hirsutum
Gorai.001G194700 Gossypium raimondii
Gorai.002G021300 Gossypium raimondii
Gorai.007G072800 Gossypium raimondii
Gorai.008G098300 Gossypium raimondii
GSVIVG01001093001 Vitis vinifera
GSVIVG01032981001 Vitis vinifera
HanXRQChr06g0175151 Helianthus annuus
HanXRQChr17g0540391 Helianthus annuus
HanXRQChr17g0550911 Helianthus annuus
Haze_12506 Corylus avellana
Haze_14982 Corylus avellana
Haze_26739 Corylus avellana
Hma1.2p1_0787F.1_g218000 Hydrangea macrophylla
Hma1.2p1_1389F.1_g279980 Hydrangea macrophylla
HPP92_003180 Vanilla planifolia
HPP92_007046 Vanilla planifolia
Lalb_Chr06g0173841 Lupinus albus
Lalb_Chr14g0364111 Lupinus albus
Lalb_Chr24g0401001 Lupinus albus
Lj1g0001102 Lotus japonicus
Lj2A92T94 Lonicera japonica
Lj2g0020160 Lotus japonicus
Lj7P617T33 Lonicera japonica
Lsat_1_v5_gn_3_104800 Lactuca sativa
Lsat_1_v5_gn_3_32681 Lactuca sativa
Manes.04G093300 Manihot esculenta
Manes.08G100900 Manihot esculenta
Manes.09G188300 Manihot esculenta
Manes.11G076300 Manihot esculenta
Mapoly0015s0091 Marchantia polymorpha
MCO16G348 Micromonas commoda
MD05G1033100 Malus domestica
MD05G1033200 Malus domestica
MD05G1252000 Malus domestica
MD09G1002400 Malus domestica
MD13G1131100 Malus domestica
MD13G1261000 Malus domestica
MD15G1309300 Malus domestica
MD16G1141300 Malus domestica
MD17G1006600 Malus domestica
Medtr3g082230 Medicago truncatula
Medtr7g084150 Medicago truncatula
MELO3C005102.2 Cucumis melo
MELO3C005103.2 Cucumis melo
Migut.F00011 Erythranthe guttata
Migut.K01053 Erythranthe guttata
Migut.M01217 Erythranthe guttata
MSTRG.15938 Avicennia marina
MSTRG.7286 Avicennia marina
MSTRG.8055 Avicennia marina
Nitab4.5_0000135g0010 Nicotiana tabacum
Nitab4.5_0000691g0250 Nicotiana tabacum
Nitab4.5_0001189g0030 Nicotiana tabacum
Nitab4.5_0007955g0010 Nicotiana tabacum
Nn3g16266 Nelumbo nucifera
Nn4g22127 Nelumbo nucifera
Oeu010254.1 Olea europaea
Oeu011728.3 Olea europaea
Oeu027104.1 Olea europaea
Oeu035270.1 Olea europaea
Os02g0520800 Oryza sativa ssp. japonica
Os04g0398500 Oryza sativa ssp. japonica
Peaxi162Scf00842g00322 Petunia axillaris
Peaxi162Scf00842g00323 Petunia axillaris
PGR102G0222 Punica granatum
PGR142G0091 Punica granatum
PGSC0003DMG400015910 Solanum tuberosum
Phvul.001G083900 Phaseolus vulgaris
Phvul.004G069800 Phaseolus vulgaris
Potri.001G067900 Populus trichocarpa
Potri.003G162200 Populus trichocarpa
Pp3c12_2830 Physcomitrium patens
Pp3c20_18360 Physcomitrium patens
Pp3c23_8620 Physcomitrium patens
Pp3c8_8210 Physcomitrium patens
PRCOL_00005794 Prasinoderma coloniale
Prupe.1G214500 Prunus persica
Prupe.3G313800 Prunus persica
Psat0s4148g0080 Pisum sativum
PSO017G4196 Papaver somniferum
PSO017G5811 Papaver somniferum
PSO478G0373 Papaver somniferum
PSO478G3639 Papaver somniferum
QL02p069328 Quercus lobata
QL03p049104 Quercus lobata
QL05p009129 Quercus lobata
RcHm_v2.0_Chr2g0176541 Rosa chinensis
RcHm_v2.0_Chr4g0428841 Rosa chinensis
Rhsim08G0039000 Rhododendron simsii
Rhsim12G0017200 Rhododendron simsii
Rhsim12G0100900 Rhododendron simsii
Sabra01G0047200 Salix brachista
Sabra03G0117900 Salix brachista
SalBow2G3233 Salvia bowleyana
SalBow4G1069 Salvia bowleyana
SalBow8G0243 Salvia bowleyana
Sc03g0005250 Simmondsia chinensis
Sc16g0003170 Simmondsia chinensis
Sed0003238 Sechium edule
Sed0006286 Sechium edule
Sed0013852 Sechium edule
SEGI_23673 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31982 Striga asiatica
SGA_v2.0_scaffold44G16956 Striga asiatica
SGA_v2.0_scaffold7G03942 Striga asiatica
SMO117G0364 Selaginella moellendorffii
Solyc11g039840.2 Solanum lycopersicum
Sopen11g011730 Solanum pennellii
Sp6g30590 Schrenkiella parvula
TAR374G0475 Trochodendron aralioides
TAR374G1218 Trochodendron aralioides
TAR622G1177 Trochodendron aralioides
TAR629G3361 Trochodendron aralioides
THA.LOC104802365 Tarenaya hassleriana
THA.LOC104807277 Tarenaya hassleriana
THA.LOC104825458 Tarenaya hassleriana
Thecc.02G191700 Theobroma cacao
Thecc.04G048200 Theobroma cacao
Thhalv10014363m.g Eutrema salsugineum
Thhalv10014365m.g Eutrema salsugineum
TPR.G15421 Trifolium pratense
TWI18G0058 Tripterygium wilfordii
TWI32G0145 Tripterygium wilfordii
TWI36G0182 Tripterygium wilfordii
TWI75G1442 Tripterygium wilfordii
unitig_22.g6954 Utricularia gibba
unitig_26.g10433 Utricularia gibba
unitig_26.g9974 Utricularia gibba
unitig_749.g13332 Utricularia gibba
vmacro01018 Vaccinium macrocarpon
vmacro01019 Vaccinium macrocarpon
vmacro08745 Vaccinium macrocarpon
vmacro16071 Vaccinium macrocarpon
VMungo0251G1570 Vigna mungo
VMungo0464G0619 Vigna mungo
VMungo1383G0684 Vigna mungo
Zm00001eb084760 Zea mays
Zm00001eb242100 Zea mays
Zm00001eb421460 Zea mays

User provided reference genes

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