Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00870 Brassica napus
A06p20930 Brassica napus
A10p33010 Brassica napus
Actinidia07083 Actinidia chinensis
Actinidia11240 Actinidia chinensis
Actinidia37266 Actinidia chinensis
Ah.08g214950 Amaranthus hybridus
Ah.15g096380 Amaranthus hybridus
AL5G25200 Arabidopsis lyrata
AL5G25210 Arabidopsis lyrata
AL6G11940 Arabidopsis lyrata
Aqoxy2G01947 Aquilegia oxysepala
Aqoxy4G03090 Aquilegia oxysepala
Aqoxy5G01728 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2B715G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DCG74N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FZ8WY7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X1SQMY Arachis hypogaea
AT3G46300 Arabidopsis thaliana
AT3G46310 Arabidopsis thaliana
AT5G02640 Arabidopsis thaliana
ATR0733G097 Amborella trichopoda
ATR0759G110 Amborella trichopoda
Atru.chr3.3786 Acer truncatum
Atru.chr8.2500 Acer truncatum
AUR62001571 Chenopodium quinoa
AUR62001849 Chenopodium quinoa
AUR62009642 Chenopodium quinoa
AUR62020213 Chenopodium quinoa
BcaB01g01015 Brassica carinata
BcaB01g06197 Brassica carinata
BcaB02g10727 Brassica carinata
BcaC01g01914 Brassica carinata
BcaC01g01915 Brassica carinata
BcaC06g32005 Brassica carinata
BcaNung03282 Brassica carinata
BolC3t12671H Brassica oleracea
BolC3t19317H Brassica oleracea
BolC3t19318H Brassica oleracea
BolC9t60133H Brassica oleracea
BraA03t09469Z Brassica rapa
BraA06t25175Z Brassica rapa
BraA06t25176Z Brassica rapa
BraA10t45338Z Brassica rapa
C03p01120 Brassica napus
C03p70650 Brassica napus
C03p70660 Brassica napus
C09p73980 Brassica napus
CANSAT54G2673 Cannabis sativa
CANSAT80G0424 Cannabis sativa
CARHR210710 Cardamine hirsuta
Carub.0005s1215 Capsella rubella
Carub.0005s1216 Capsella rubella
Carub.0006s0146 Capsella rubella
Ca_11435_v3 Cicer arietinum L.
Cc01_g12070 Coffea canephora
Cc06_g03230 Coffea canephora
Cc07_g05260 Coffea canephora
Cfa004251 Carpinus fangiana
Cfa017459 Carpinus fangiana
Ciclev10012982m.g Citrus clementina
Ciclev10030290m.g Citrus clementina
CiPaw.01G030700 Carya illinoinensis
CiPaw.01G030800 Carya illinoinensis
CiPaw.02G014300 Carya illinoinensis
CiPaw.09G186200 Carya illinoinensis
CiPaw.13G102100 Carya illinoinensis
ClCG02G020590 Citrullus lanatus
ClCG03G001760 Citrullus lanatus
ClCG10G020770 Citrullus lanatus
COL.COLO4_07093 Corchorus olitorius
COL.COLO4_18420 Corchorus olitorius
Cpa.g.sc139.1 Carica papaya
Cpa.g.sc3922.1 Carica papaya
CsaV3_1G033830 Cucumis sativus L.
CsaV3_3G035220 Cucumis sativus L.
CsaV3_6G022030 Cucumis sativus L.
CSS0019295 Camellia sinensis var. sinensis
DCAR_010959 Daucus carota
DCAR_014949 Daucus carota
DCAR_015584 Daucus carota
DCAR_017751 Daucus carota
DCAR_018868 Daucus carota
Dinv06291 Davidia involucrata
Dinv35670 Davidia involucrata
Dinv39937 Davidia involucrata
Duzib093G0125 Durio zibethinus
Duzib106G2004 Durio zibethinus
Duzib128G1720 Durio zibethinus
Duzib150G0336 Durio zibethinus
Duzib168G1913 Durio zibethinus
Duzib170G1033 Durio zibethinus
ECA248G3075 Erigeron canadensis
EL10Ac7g15949 Beta vulgaris
EL10Ac7g16278 Beta vulgaris
Eucgr.A01213 Eucalyptus grandis
Eucgr.H01927 Eucalyptus grandis
Eucgr.K03179 Eucalyptus grandis
Eucgr.L00360 Eucalyptus grandis
FAN02G3512 Fragaria x ananassa
FAN05G1053 Fragaria x ananassa
FAN09G4043 Fragaria x ananassa
FAN14G4174 Fragaria x ananassa
FvH4_6g14750 Fragaria vesca
Glyma.03G175100 Glycine max
Glyma.10G046800 Glycine max
Glyma.13G134700 Glycine max
Glyma.13G331100 Glycine max
Glyma.19G175800 Glycine max
Gohir.A01G218900 Gossypium hirsutum
Gohir.A03G037400 Gossypium hirsutum
Gohir.A04G078100 Gossypium hirsutum
Gohir.A07G094900 Gossypium hirsutum
Gohir.A08G000129 Gossypium hirsutum
Gohir.A09G160000 Gossypium hirsutum
Gohir.D01G207900 Gossypium hirsutum
Gohir.D03G131000 Gossypium hirsutum
Gohir.D04G117300 Gossypium hirsutum
Gohir.D07G099200 Gossypium hirsutum
Gohir.D08G009900 Gossypium hirsutum
Gohir.D09G155600 Gossypium hirsutum
Gorai.001G106900 Gossypium raimondii
Gorai.002G253000 Gossypium raimondii
Gorai.003G137800 Gossypium raimondii
Gorai.004G003100 Gossypium raimondii
Gorai.006G177000 Gossypium raimondii
Gorai.009G422300 Gossypium raimondii
HanXRQChr04g0110311 Helianthus annuus
HanXRQChr14g0429171 Helianthus annuus
Haze_15148 Corylus avellana
Haze_20701 Corylus avellana
Hma1.2p1_0035F.1_g021820 Hydrangea macrophylla
Hma1.2p1_0746F.1_g212310 Hydrangea macrophylla
HPP92_006589 Vanilla planifolia
HPP92_012460 Vanilla planifolia
HPP92_019082 Vanilla planifolia
HPP92_028469 Vanilla planifolia
Lalb_Chr02g0153371 Lupinus albus
Lalb_Chr21g0314511 Lupinus albus
Lalb_Chr21g0314521 Lupinus albus
Lalb_Chr25g0289391 Lupinus albus
Lj1C177T9 Lonicera japonica
Lj1g0018959 Lotus japonicus
Lj3g0016506 Lotus japonicus
Lj5g0022817 Lotus japonicus
Lsat_1_v5_gn_5_167180 Lactuca sativa
Lsat_1_v5_gn_6_26380 Lactuca sativa
Manes.04G028900 Manihot esculenta
Manes.08G073300 Manihot esculenta
Manes.11G136900 Manihot esculenta
MBI05_g32634_MAGBIO Magnolia biondii
MBI14_g21098_MAGBIO Magnolia biondii
MBI16_g10976_MAGBIO Magnolia biondii
MD04G1116500 Malus domestica
MD12G1132300 Malus domestica
Medtr1g067350 Medicago truncatula
Medtr2g096120 Medicago truncatula
Medtr2g096130 Medicago truncatula
Medtr7g100340 Medicago truncatula
MELO3C009291.2 Cucumis melo
MELO3C020681.2 Cucumis melo
MELO3C025706.2 Cucumis melo
Migut.K01099 Erythranthe guttata
Migut.L01639 Erythranthe guttata
Migut.N02647 Erythranthe guttata
Nitab4.5_0000040g0520 Nicotiana tabacum
Nitab4.5_0000182g0070 Nicotiana tabacum
Nitab4.5_0000270g0250 Nicotiana tabacum
Nitab4.5_0004370g0030 Nicotiana tabacum
Nitab4.5_0007030g0030 Nicotiana tabacum
Nn1g01330 Nelumbo nucifera
Nn2g10547 Nelumbo nucifera
Nn2g12832 Nelumbo nucifera
Nn5g29477 Nelumbo nucifera
Oeu035168.1 Olea europaea
Oeu040266.1 Olea europaea
Oeu058517.1 Olea europaea
Os05g0120300 Oryza sativa ssp. japonica
Peaxi162Scf00411g00813 Petunia axillaris
PGR004G2176 Punica granatum
PGR004G2814 Punica granatum
PGR102G2182 Punica granatum
PGSC0003DMG400011054 Solanum tuberosum
PGSC0003DMG400015526 Solanum tuberosum
PGSC0003DMG400030480 Solanum tuberosum
Phvul.001G172100 Phaseolus vulgaris
Phvul.003G063400 Phaseolus vulgaris
Phvul.004G085094 Phaseolus vulgaris
Phvul.007G160800 Phaseolus vulgaris
Phvul.L002927 Phaseolus vulgaris
Potri.006G215000 Populus trichocarpa
Potri.016G081600 Populus trichocarpa
Prupe.4G261600 Prunus persica
Prupe.6G246400 Prunus persica
Psat3g048080 Pisum sativum
Psat5g282120 Pisum sativum
Psat6g069440 Pisum sativum
PSO339G4561 Papaver somniferum
PSO384G0436 Papaver somniferum
QL01p034494 Quercus lobata
QL06p044552 Quercus lobata
QL07p046064 Quercus lobata
RcHm_v2.0_Chr3g0467961 Rosa chinensis
Rhsim05G0185100 Rhododendron simsii
Rhsim08G0110600 Rhododendron simsii
Rhsim13G0088900 Rhododendron simsii
Sabra06G0166000 Salix brachista
Sabra16G0089400 Salix brachista
SalBow3G1187 Salvia bowleyana
SalBow3G2888 Salvia bowleyana
Sc01g0003810 Simmondsia chinensis
Sed0001325 Sechium edule
Sed0022195 Sechium edule
Sed0026303 Sechium edule
SEGI_03855 Sequoiadendron giganteum
SEGI_24546 Sequoiadendron giganteum
SGA_v2.0_scaffold194G40733 Striga asiatica
SGA_v2.0_scaffold35G14187 Striga asiatica
SGA_v2.0_scaffold94G28644 Striga asiatica
Solyc10g084510.1 Solanum lycopersicum
Solyc11g072890.1 Solanum lycopersicum
Sopen06g031980 Solanum pennellii
Sopen10g033940 Solanum pennellii
Sopen11g030550 Solanum pennellii
Sp5g15360 Schrenkiella parvula
Sp6g39880 Schrenkiella parvula
TAR381G0392 Trochodendron aralioides
TAR623G1692 Trochodendron aralioides
TAR625G1454 Trochodendron aralioides
TAR628G0049 Trochodendron aralioides
TAR628G0078 Trochodendron aralioides
TAR628G0578 Trochodendron aralioides
TAR628G0860 Trochodendron aralioides
TAR628G1420 Trochodendron aralioides
TAR628G1455 Trochodendron aralioides
TAR636G3383 Trochodendron aralioides
THA.LOC104814872 Tarenaya hassleriana
THA.LOC104826999 Tarenaya hassleriana
Thecc.05G048400 Theobroma cacao
Thecc.09G330900 Theobroma cacao
Thhalv10002850m.g Eutrema salsugineum
Thhalv10002906m.g Eutrema salsugineum
Thhalv10014890m.g Eutrema salsugineum
TPR.G10526 Trifolium pratense
TPR.G11631 Trifolium pratense
TPR.G35579 Trifolium pratense
TWI53G1006 Tripterygium wilfordii
TWI74G0388 Tripterygium wilfordii
TWI75G0718 Tripterygium wilfordii
TWI79G0420 Tripterygium wilfordii
unitig_27.g25073 Utricularia gibba
unitig_744.g24623 Utricularia gibba
vmacro03134 Vaccinium macrocarpon
VMungo0720G1849 Vigna mungo
VMungo1080G0221 Vigna mungo
VMungo1383G3255 Vigna mungo
Zm00001eb265860 Zea mays

User provided reference genes

Program Settings