Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00300 Brassica napus
A02p43750 Brassica napus
A03p04390 Brassica napus
A06p32030 Brassica napus
Aa31LG1G16770 Aethionema arabicum
Aa31LG3G17080 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.608 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.610 Anthoceros agrestis
Actinidia20420 Actinidia chinensis
Actinidia28882 Actinidia chinensis
Ah.03g142670 Amaranthus hybridus
AL6G20500 Arabidopsis lyrata
AL8G42730 Arabidopsis lyrata
Aqoxy5G00810 Aquilegia oxysepala
Aqoxy5G00811 Aquilegia oxysepala
Aqoxy5G00812 Aquilegia oxysepala
Aqoxy6G00531 Aquilegia oxysepala
Aqoxy6G00532 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B0G5MH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XDT2HS Arachis hypogaea
AT5G10050 Arabidopsis thaliana
AT5G65205 Arabidopsis thaliana
ATR0564G127 Amborella trichopoda
ATR0739G009 Amborella trichopoda
Atru.chr1.3652 Acer truncatum
Atru.chr3.1062 Acer truncatum
Atru.chr3.1063 Acer truncatum
Atru.chr4.290 Acer truncatum
Atru.chr4.920 Acer truncatum
AUR62002044 Chenopodium quinoa
AUR62003751 Chenopodium quinoa
BcaB01g05550 Brassica carinata
BcaB02g09883 Brassica carinata
BcaB05g21507 Brassica carinata
BcaC01g02754 Brassica carinata
BcaC03g13290 Brassica carinata
BcaC03g18316 Brassica carinata
BcaC03g18318 Brassica carinata
BolC2t06385H Brassica oleracea
BolC2t12457H Brassica oleracea
BolC3t13017H Brassica oleracea
BolC3t18349H Brassica oleracea
BraA02t05015Z Brassica rapa
BraA02t09299Z Brassica rapa
BraA03t09782Z Brassica rapa
BraA06t26133Z Brassica rapa
C02p04220 Brassica napus
C02p63890 Brassica napus
C03p04830 Brassica napus
C03p60900 Brassica napus
CAN.G1068.2 Capsicum annuum
CAN.G1343.8 Capsicum annuum
CANSAT01G0620 Cannabis sativa
CANSAT01G3180 Cannabis sativa
CARHR057930 Cardamine hirsuta
CARHR203240 Cardamine hirsuta
CARHR279120 Cardamine hirsuta
Carub.0006s0851 Capsella rubella
Carub.0008s2605 Capsella rubella
Ca_16551_v3 Cicer arietinum L.
Ca_22094_v3 Cicer arietinum L.
Ca_28935_v3 Cicer arietinum L.
Cc00_g14770 Coffea canephora
Cc07_g07370 Coffea canephora
CDE05G0877 Ceratophyllum demersum
CDE05G1709 Ceratophyllum demersum
CDE10G0016 Ceratophyllum demersum
CDE10G1298 Ceratophyllum demersum
Cfa004389 Carpinus fangiana
Cfa008159 Carpinus fangiana
Cfa020603 Carpinus fangiana
Cfa022528 Carpinus fangiana
Cfa023314 Carpinus fangiana
Cfa025565 Carpinus fangiana
Cfa026530 Carpinus fangiana
Ciclev10026237m.g Citrus clementina
Ciclev10026258m.g Citrus clementina
Ciclev10026696m.g Citrus clementina
CiPaw.03G137600 Carya illinoinensis
CiPaw.04G095000 Carya illinoinensis
ClCG01G019040 Citrullus lanatus
ClCG11G004250 Citrullus lanatus
COL.COLO4_03580 Corchorus olitorius
COL.COLO4_03581 Corchorus olitorius
COL.COLO4_11618 Corchorus olitorius
Cpa.g.sc1962.2 Carica papaya
Cpa.g.sc673.1 Carica papaya
Cre07.g352450 Chlamydomonas reinhardtii
Cre12.g559350 Chlamydomonas reinhardtii
CsaV3_2G014920 Cucumis sativus L.
CsaV3_6G045730 Cucumis sativus L.
CSS0030863 Camellia sinensis var. sinensis
CSS0034117 Camellia sinensis var. sinensis
DCAR_010082 Daucus carota
DCAR_014353 Daucus carota
Dinv21959 Davidia involucrata
Dinv23046 Davidia involucrata
Duzib147G0230 Durio zibethinus
Duzib147G1175 Durio zibethinus
Duzib264G0564 Durio zibethinus
ECA238G1959 Erigeron canadensis
ECA238G1987 Erigeron canadensis
ECA246G4770 Erigeron canadensis
EL10Ac6g15060 Beta vulgaris
Eucgr.H02334 Eucalyptus grandis
Eucgr.I00348 Eucalyptus grandis
Eucgr.I00351 Eucalyptus grandis
Eucgr.I00352 Eucalyptus grandis
Eucgr.I00354 Eucalyptus grandis
Eucgr.I00355 Eucalyptus grandis
Eucgr.L02742 Eucalyptus grandis
FAN19G0747 Fragaria x ananassa
FAN19G1840 Fragaria x ananassa
FAN23G2268 Fragaria x ananassa
FAN26G1439 Fragaria x ananassa
FAN26G1584 Fragaria x ananassa
FAN26G1629 Fragaria x ananassa
FAN28G0574 Fragaria x ananassa
FAN28G1422 Fragaria x ananassa
FAN28G1816 Fragaria x ananassa
FvH4_1g18260 Fragaria vesca
FvH4_1g21770 Fragaria vesca
Glyma.05G108500 Glycine max
Glyma.11G237000 Glycine max
Glyma.11G237100 Glycine max
Glyma.11G237300 Glycine max
Glyma.18G019900 Glycine max
Gohir.A10G089100 Gossypium hirsutum
Gohir.A12G078522 Gossypium hirsutum
Gohir.D10G099000 Gossypium hirsutum
Gorai.008G102700 Gossypium raimondii
Gorai.011G108600 Gossypium raimondii
GSVIVG01007386001 Vitis vinifera
GSVIVG01022193001 Vitis vinifera
HanXRQChr12g0377021 Helianthus annuus
HanXRQChr14g0445981 Helianthus annuus
HanXRQChr15g0471701 Helianthus annuus
Haze_15024 Corylus avellana
Haze_25004 Corylus avellana
Hma1.2p1_0070F.1_g037630 Hydrangea macrophylla
Hma1.2p1_0070F.1_g037640 Hydrangea macrophylla
Hma1.2p1_0070F.1_g037650 Hydrangea macrophylla
HPP92_016472 Vanilla planifolia
HPP92_027140 Vanilla planifolia
Lalb_Chr23g0277261 Lupinus albus
Lj4A880T60 Lonicera japonica
Lj4g0025712 Lotus japonicus
Lj4P165T33 Lonicera japonica
Lj6g0015310 Lotus japonicus
Lsat_1_v5_gn_2_67700 Lactuca sativa
Lsat_1_v5_gn_2_67720 Lactuca sativa
Lsat_1_v5_gn_3_85580 Lactuca sativa
Manes.12G117700 Manihot esculenta
Manes.12G139300 Manihot esculenta
Manes.13G108900 Manihot esculenta
Mapoly0008s0100 Marchantia polymorpha
MBI02_g37833_MAGBIO Magnolia biondii
MBI13_g04192_MAGBIO Magnolia biondii
MBI16_g32079_MAGBIO Magnolia biondii
MCO09G705 Micromonas commoda
MD01G1022400 Malus domestica
MD02G1189900 Malus domestica
Medtr1563s0010 Medicago truncatula
Medtr3g087850 Medicago truncatula
Medtr3g087860 Medicago truncatula
Medtr4g097510 Medicago truncatula
MELO3C007783.2 Cucumis melo
MELO3C023311.2 Cucumis melo
MELO3C033005.2 Cucumis melo
Migut.L00093 Erythranthe guttata
Migut.L00427 Erythranthe guttata
MSTRG.23328 Avicennia marina
Nitab4.5_0000142g0390 Nicotiana tabacum
Nitab4.5_0000214g0180 Nicotiana tabacum
Nitab4.5_0000727g0070 Nicotiana tabacum
Nitab4.5_0005305g0020 Nicotiana tabacum
Nn5g28997 Nelumbo nucifera
Oeu010982.1 Olea europaea
Os04g0457200 Oryza sativa ssp. japonica
Os09g0524500 Oryza sativa ssp. japonica
Os12g0633800 Oryza sativa ssp. japonica
Peaxi162Scf00096g00189 Petunia axillaris
Peaxi162Scf00204g00614 Petunia axillaris
PGR004G2840 Punica granatum
PGR102G1888 Punica granatum
PGSC0003DMG400012797 Solanum tuberosum
PGSC0003DMG400021430 Solanum tuberosum
Phvul.001G249900 Phaseolus vulgaris
Phvul.003G232700 Phaseolus vulgaris
Potri.005G080900 Populus trichocarpa
Potri.007G007300 Populus trichocarpa
Potri.007G086600 Populus trichocarpa
Pp3c10_11010 Physcomitrium patens
Pp3c2_15870 Physcomitrium patens
Pp3s30_517 Physcomitrium patens
PRCOL_00004020 Prasinoderma coloniale
PRCOL_00004907 Prasinoderma coloniale
PRCOL_00005133 Prasinoderma coloniale
Prupe.6G178200 Prunus persica
Prupe.6G216500 Prunus persica
Psat0s261g0040 Pisum sativum
Psat4g080320 Pisum sativum
Psat5g088480 Pisum sativum
Psat5g088520 Pisum sativum
Psat5g088720 Pisum sativum
PSO017G4846 Papaver somniferum
PSO170G2705 Papaver somniferum
PSO541G4025 Papaver somniferum
PSO675G6544 Papaver somniferum
QL06p033478 Quercus lobata
QL06p038851 Quercus lobata
RcHm_v2.0_Chr2g0108801 Rosa chinensis
RcHm_v2.0_Chr2g0108811 Rosa chinensis
RcHm_v2.0_Chr2g0108821 Rosa chinensis
RcHm_v2.0_Chr2g0115641 Rosa chinensis
Rhsim08G0008300 Rhododendron simsii
Rhsim10G0155800 Rhododendron simsii
Rhsim10G0155900 Rhododendron simsii
Sabra07G0005600 Salix brachista
Sabra07G0071600 Salix brachista
SalBow5G0642 Salvia bowleyana
Sc07g0000580 Simmondsia chinensis
Sed0001177 Sechium edule
Sed0018189 Sechium edule
SEGI_16005 Sequoiadendron giganteum
SEGI_29174 Sequoiadendron giganteum
SEGI_30540 Sequoiadendron giganteum
SGA_v2.0_scaffold47G17741 Striga asiatica
SMO364G0694 Selaginella moellendorffii
SMO367G0113 Selaginella moellendorffii
Solyc02g092060.1 Solanum lycopersicum
Solyc04g054400.3 Solanum lycopersicum
Sopen04g024230 Solanum pennellii
Sp2g28290 Schrenkiella parvula
Sp6g33350 Schrenkiella parvula
SpUn0247_0020 Schrenkiella parvula
TAR376G0676 Trochodendron aralioides
TAR381G0873 Trochodendron aralioides
THA.LOC104818484 Tarenaya hassleriana
Thecc.01G076600 Theobroma cacao
Thecc.01G108800 Theobroma cacao
Thhalv10004715m.g Eutrema salsugineum
Thhalv10014330m.g Eutrema salsugineum
TPR.G21066 Trifolium pratense
TPR.G3710 Trifolium pratense
TWI53G1425 Tripterygium wilfordii
TWI74G0704 Tripterygium wilfordii
TWI77G0074 Tripterygium wilfordii
TWI77G1039 Tripterygium wilfordii
unitig_747.g21750 Utricularia gibba
unitig_747.g21751 Utricularia gibba
vmacro12930 Vaccinium macrocarpon
vmacro18621 Vaccinium macrocarpon
VMungo0251G2609 Vigna mungo
VMungo0315G0001 Vigna mungo
VMungo1383G1909 Vigna mungo
Zm00001eb080970 Zea mays

User provided reference genes

Program Settings