Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p09620 Brassica napus
A07p08220 Brassica napus
Aa31LG2G1980 Aethionema arabicum
Aa31LG8G10850 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1458 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.188 Anthoceros agrestis
Actinidia22088 Actinidia chinensis
Actinidia30558 Actinidia chinensis
Actinidia39946 Actinidia chinensis
AL1G64630 Arabidopsis lyrata
AL3G39370 Arabidopsis lyrata
Aqoxy1G00499 Aquilegia oxysepala
Aqoxy2G00200 Aquilegia oxysepala
Aqoxy2G03816 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3B1TBB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.53N7TD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5T6AGB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6BXT91 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8G5UYU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D41UNS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SA2BAT Arachis hypogaea
AT1G54390 Arabidopsis thaliana
AT3G24010 Arabidopsis thaliana
ATR0697G210 Amborella trichopoda
ATR0787G094 Amborella trichopoda
Atru.chr2.1366 Acer truncatum
Atru.chr4.1817 Acer truncatum
AUR62012215 Chenopodium quinoa
AUR62022848 Chenopodium quinoa
AUR62032064 Chenopodium quinoa
AUR62032684 Chenopodium quinoa
AUR62043886 Chenopodium quinoa
BcaB06g26596 Brassica carinata
BcaB06g26927 Brassica carinata
BcaC02g09472 Brassica carinata
BcaC06g35630 Brassica carinata
BolC4t25896H Brassica oleracea
BolC7t41762H Brassica oleracea
BraA04t16621Z Brassica rapa
BraA07t28605Z Brassica rapa
C04p43190 Brassica napus
C07p12760 Brassica napus
CAN.G1588.4 Capsicum annuum
CAN.G497.82 Capsicum annuum
CAN.G960.51 Capsicum annuum
CANSAT78G1624 Cannabis sativa
CANSAT78G2220 Cannabis sativa
CANSAT78G2266 Cannabis sativa
CARHR055500 Cardamine hirsuta
CARHR100220 Cardamine hirsuta
Carub.0002s0957 Capsella rubella
Carub.0003s2451 Capsella rubella
Ca_08259_v3 Cicer arietinum L.
Ca_11791_v3 Cicer arietinum L.
CBR_g3046 Chara braunii
CBR_g34558 Chara braunii
CBR_g51242 Chara braunii
Cc00_g05140 Coffea canephora
Cc03_g07050 Coffea canephora
CDE02G1586 Ceratophyllum demersum
CDE10G0048 Ceratophyllum demersum
CDE10G0711 Ceratophyllum demersum
Cfa019497 Carpinus fangiana
Cfa019499 Carpinus fangiana
Cfa025847 Carpinus fangiana
Ciclev10005726m.g Citrus clementina
Ciclev10021354m.g Citrus clementina
CiPaw.01G206000 Carya illinoinensis
CiPaw.02G127400 Carya illinoinensis
CiPaw.09G001400 Carya illinoinensis
CiPaw.10G000600 Carya illinoinensis
CiPaw.13G158100 Carya illinoinensis
ClCG04G005270 Citrullus lanatus
ClCG05G003690 Citrullus lanatus
COL.COLO4_13611 Corchorus olitorius
Cpa.g.sc51.101 Carica papaya
Cpa.g.sc59.68 Carica papaya
Cre07.g357650 Chlamydomonas reinhardtii
Cre16.g668200 Chlamydomonas reinhardtii
CsaV3_3G011410 Cucumis sativus L.
CsaV3_4G013320 Cucumis sativus L.
CsaV3_5G014090 Cucumis sativus L.
CSS0003468 Camellia sinensis var. sinensis
CSS0007216 Camellia sinensis var. sinensis
CSS0012732 Camellia sinensis var. sinensis
CSS0018143 Camellia sinensis var. sinensis
CSS0034834 Camellia sinensis var. sinensis
DCAR_009678 Daucus carota
DCAR_013691 Daucus carota
DCAR_016869 Daucus carota
Dinv27150 Davidia involucrata
Dinv37010 Davidia involucrata
Dinv38293 Davidia involucrata
Duzib106G0634 Durio zibethinus
Duzib151G1018 Durio zibethinus
Duzib177G0497 Durio zibethinus
Duzib268G1141 Durio zibethinus
ECA248G1602 Erigeron canadensis
ECA285G0009 Erigeron canadensis
EL10Ac2g04795 Beta vulgaris
EL10Ac3g06813 Beta vulgaris
Eucgr.A02091 Eucalyptus grandis
Eucgr.H00109 Eucalyptus grandis
FAN03G1589 Fragaria x ananassa
FAN10G0774 Fragaria x ananassa
FAN19G2334 Fragaria x ananassa
FAN23G2462 Fragaria x ananassa
FAN26G1451 Fragaria x ananassa
FvH4_1g28050 Fragaria vesca
FvH4_4g05430 Fragaria vesca
FvH4_7g02040 Fragaria vesca
Glyma.10G127700 Glycine max
Glyma.16G041900 Glycine max
Glyma.19G110500 Glycine max
Glyma.20G079100 Glycine max
Gohir.A02G027400 Gossypium hirsutum
Gohir.A09G053666 Gossypium hirsutum
Gohir.A11G258600 Gossypium hirsutum
Gohir.D02G035300 Gossypium hirsutum
Gohir.D09G053056 Gossypium hirsutum
Gohir.D11G268700 Gossypium hirsutum
Gorai.005G039000 Gossypium raimondii
Gorai.006G054900 Gossypium raimondii
Gorai.007G288500 Gossypium raimondii
GSVIVG01029026001 Vitis vinifera
GSVIVG01033390001 Vitis vinifera
HanXRQChr01g0024701 Helianthus annuus
HanXRQChr03g0090411 Helianthus annuus
HanXRQChr11g0342751 Helianthus annuus
Haze_08458 Corylus avellana
Haze_11185 Corylus avellana
Haze_11190 Corylus avellana
Haze_27341 Corylus avellana
Hma1.2p1_0903F.1_g234970 Hydrangea macrophylla
HPP92_009426 Vanilla planifolia
HPP92_017467 Vanilla planifolia
Hund24853 Selenicereus undatus
Lalb_Chr14g0364451 Lupinus albus
Lalb_Chr19g0128641 Lupinus albus
Lj1A1137T84 Lonicera japonica
Lj1g0022931 Lotus japonicus
Lj6A642T83 Lonicera japonica
Lj6g0003587 Lotus japonicus
Lsat_1_v5_gn_0_4681 Lactuca sativa
Lsat_1_v5_gn_1_59540 Lactuca sativa
Manes.03G154900 Manihot esculenta
Manes.08G150000 Manihot esculenta
Mapoly0099s0054 Marchantia polymorpha
MBI02_g04228_MAGBIO Magnolia biondii
MBI10_g16800_MAGBIO Magnolia biondii
MCO16G516 Micromonas commoda
MD13G1230600 Malus domestica
MD13G1230700 Malus domestica
MD14G1002200 Malus domestica
Medtr1g046460 Medicago truncatula
Medtr7g085450 Medicago truncatula
MELO3C006348.2 Cucumis melo
MELO3C008797.2 Cucumis melo
Migut.C00472 Erythranthe guttata
Migut.D01187 Erythranthe guttata
Migut.G00607 Erythranthe guttata
MSTRG.27677 Avicennia marina
MSTRG.4200 Avicennia marina
Nitab4.5_0000436g0140 Nicotiana tabacum
Nitab4.5_0000436g0160 Nicotiana tabacum
Nitab4.5_0003136g0010 Nicotiana tabacum
Nitab4.5_0007223g0020 Nicotiana tabacum
Nitab4.5_0008228g0020 Nicotiana tabacum
Nn2g15174 Nelumbo nucifera
Nn3g19862 Nelumbo nucifera
Oeu003208.1 Olea europaea
Oeu003209.1 Olea europaea
Oeu003210.1 Olea europaea
Oeu008827.1 Olea europaea
Oeu063493.1 Olea europaea
Os03g0143600 Oryza sativa ssp. japonica
Os03g0748200 Oryza sativa ssp. japonica
Peaxi162Scf00003g04833 Petunia axillaris
Peaxi162Scf00047g01527 Petunia axillaris
PGR042G0488 Punica granatum
PGR142G0008 Punica granatum
PGR142G0027 Punica granatum
PGSC0003DMG400008367 Solanum tuberosum
PGSC0003DMG400011588 Solanum tuberosum
Phvul.001G109900 Phaseolus vulgaris
Phvul.007G238400 Phaseolus vulgaris
Potri.003G174000 Populus trichocarpa
Potri.013G058800 Populus trichocarpa
Potri.019G033800 Populus trichocarpa
Pp3c17_17740 Physcomitrium patens
Pp3c17_6960 Physcomitrium patens
Prupe.1G056400 Prunus persica
Prupe.7G003300 Prunus persica
Psat3g089120 Pisum sativum
Psat6g109760 Pisum sativum
PSO017G6518 Papaver somniferum
PSO063G3245 Papaver somniferum
PSO063G4327 Papaver somniferum
PSO339G0446 Papaver somniferum
QL06p022689 Quercus lobata
QL06p022695 Quercus lobata
QL07p020088 Quercus lobata
QL07p020095 Quercus lobata
RcHm_v2.0_Chr3g0497201 Rosa chinensis
RcHm_v2.0_Chr4g0396581 Rosa chinensis
Rhsim02G0050100 Rhododendron simsii
Rhsim02G0050200 Rhododendron simsii
Rhsim02G0050900 Rhododendron simsii
Rhsim03G0001100 Rhododendron simsii
Sabra03G0127500 Salix brachista
Sabra13G0052300 Salix brachista
Sabra19G0041700 Salix brachista
SalBow2G2270 Salvia bowleyana
Sc19g0005830 Simmondsia chinensis
Sc19g0006480 Simmondsia chinensis
Sed0004284 Sechium edule
Sed0007674 Sechium edule
Sed0026388 Sechium edule
SEGI_10634 Sequoiadendron giganteum
SEGI_11360 Sequoiadendron giganteum
SEGI_33253 Sequoiadendron giganteum
SEGI_38200 Sequoiadendron giganteum
SGA_v2.0_scaffold155G37236 Striga asiatica
SGA_v2.0_scaffold59G20726 Striga asiatica
SHI00004 Sapria himalayana
SHI00535 Sapria himalayana
SHI00537 Sapria himalayana
SMO116G0117 Selaginella moellendorffii
SMO358G0727 Selaginella moellendorffii
Solyc09g091190.3 Solanum lycopersicum
Solyc10g078520.2 Solanum lycopersicum
Sopen09g034160 Solanum pennellii
Sopen10g029170 Solanum pennellii
Sp3g21950 Schrenkiella parvula
Sp7g07100 Schrenkiella parvula
TAR254G0001 Trochodendron aralioides
TAR623G0799 Trochodendron aralioides
TAR633G1836 Trochodendron aralioides
THA.LOC104821622 Tarenaya hassleriana
THA.LOC104823784 Tarenaya hassleriana
Thecc.04G215100 Theobroma cacao
Thecc.05G293600 Theobroma cacao
Thhalv10002653m.g Eutrema salsugineum
Thhalv10003462m.g Eutrema salsugineum
TPR.G23642 Trifolium pratense
TPR.G5877 Trifolium pratense
TWI09G0639 Tripterygium wilfordii
TWI74G0403 Tripterygium wilfordii
TWI77G0420 Tripterygium wilfordii
unitig_747.g21674 Utricularia gibba
unitig_748.g8537 Utricularia gibba
vmacro12572 Vaccinium macrocarpon
vmacro15498 Vaccinium macrocarpon
VMungo0720G0022 Vigna mungo
VMungo1383G1105 Vigna mungo
Zm00001eb057160 Zea mays
Zm00001eb402910 Zea mays

User provided reference genes

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