Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p18700 Brassica napus
A08p26630 Brassica napus
A09p38880 Brassica napus
Aa31LG4G17530 Aethionema arabicum
Aa31LG7G9490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3763 Anthoceros agrestis
Actinidia15110 Actinidia chinensis
Actinidia25888 Actinidia chinensis
Actinidia29450 Actinidia chinensis
Actinidia34131 Actinidia chinensis
Actinidia37449 Actinidia chinensis
Ah.03g133430 Amaranthus hybridus
Ah.13g068840 Amaranthus hybridus
AL1G40370 Arabidopsis lyrata
AL5G28570 Arabidopsis lyrata
Aqoxy3G01279 Aquilegia oxysepala
Aqoxy5G03692 Aquilegia oxysepala
Aqoxy5G03693 Aquilegia oxysepala
Aqoxy7G00300 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0P9EHV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.48P4SG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.91SUEF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EY481C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea
AT1G24560 Arabidopsis thaliana
AT3G49055 Arabidopsis thaliana
ATR0199G036 Amborella trichopoda
ATR0680G142 Amborella trichopoda
Atru.chr1.423 Acer truncatum
Atru.chr11.2170 Acer truncatum
Atru.chr11.2171 Acer truncatum
AUR62003420 Chenopodium quinoa
AUR62005509 Chenopodium quinoa
AUR62024233 Chenopodium quinoa
AUR62029421 Chenopodium quinoa
BcaB01g00755 Brassica carinata
BcaB01g00756 Brassica carinata
BcaB01g00757 Brassica carinata
BcaB03g12054 Brassica carinata
BcaC01g01653 Brassica carinata
BcaC05g26511 Brassica carinata
BcaC05g26706 Brassica carinata
BcaC07g39380 Brassica carinata
BolC3t19633H Brassica oleracea
BolC5t31288H Brassica oleracea
BraA06t24952Z Brassica rapa
BraA09t39395Z Brassica rapa
C03p73360 Brassica napus
C05p25600 Brassica napus
CAN.G1175.13 Capsicum annuum
CAN.G436.2 Capsicum annuum
CANSAT01G2908 Cannabis sativa
CANSAT21G0228 Cannabis sativa
CARHR026530 Cardamine hirsuta
CARHR057370 Cardamine hirsuta
CARHR157880 Cardamine hirsuta
Carub.0001s2555 Capsella rubella
Carub.0005s1525 Capsella rubella
Ca_10743_v3 Cicer arietinum L.
Ca_17787_v3 Cicer arietinum L.
CBR_g72679 Chara braunii
Cc02_g02720 Coffea canephora
Cc11_g16020 Coffea canephora
CDE02G0412 Ceratophyllum demersum
CDE06G2833 Ceratophyllum demersum
CDE09G0166 Ceratophyllum demersum
CDE09G0733 Ceratophyllum demersum
Cfa009242 Carpinus fangiana
Cfa016260 Carpinus fangiana
Ciclev10006475m.g Citrus clementina
Ciclev10030886m.g Citrus clementina
CiPaw.05G177900 Carya illinoinensis
CiPaw.05G264200 Carya illinoinensis
ClCG11G000520 Citrullus lanatus
COL.COLO4_04383 Corchorus olitorius
COL.COLO4_14091 Corchorus olitorius
COL.COLO4_23496 Corchorus olitorius
COL.COLO4_28046 Corchorus olitorius
COL.COLO4_28047 Corchorus olitorius
Cpa.g.c48372 Carica papaya
Cpa.g.sc107.74 Carica papaya
Cpa.g.sc33.59 Carica papaya
Cpa.g.sc33.60 Carica papaya
CsaV3_5G014120 Cucumis sativus L.
CSS0001242 Camellia sinensis var. sinensis
CSS0021797 Camellia sinensis var. sinensis
CSS0022437 Camellia sinensis var. sinensis
CSS0039631 Camellia sinensis var. sinensis
CSS0043891 Camellia sinensis var. sinensis
DCAR_007040 Daucus carota
DCAR_026500 Daucus carota
DCAR_031168 Daucus carota
Dinv11046 Davidia involucrata
Dinv14743 Davidia involucrata
Dinv15205 Davidia involucrata
Dinv35225 Davidia involucrata
Duzib205G1095 Durio zibethinus
Duzib251G0500 Durio zibethinus
ECA233G5166 Erigeron canadensis
EL10Ac3g05602 Beta vulgaris
EL10Ac6g13886 Beta vulgaris
EL10As2g23157 Beta vulgaris
Eucgr.A02769 Eucalyptus grandis
Eucgr.H02469 Eucalyptus grandis
FAN01G0120 Fragaria x ananassa
FAN03G2117 Fragaria x ananassa
FAN03G3084 Fragaria x ananassa
FAN06G0467 Fragaria x ananassa
FAN06G4738 Fragaria x ananassa
FAN07G0443 Fragaria x ananassa
FAN10G0021 Fragaria x ananassa
FAN10G2158 Fragaria x ananassa
FAN12G2420 Fragaria x ananassa
FAN17G0571 Fragaria x ananassa
FAN22G0767 Fragaria x ananassa
FvH4_4g25380 Fragaria vesca
FvH4_7g29830 Fragaria vesca
Glyma.05G173600 Glycine max
Glyma.08G130900 Glycine max
Glyma.10G233600 Glycine max
Glyma.20G160800 Glycine max
Gohir.A03G132500 Gossypium hirsutum
Gohir.A12G256200 Gossypium hirsutum
Gohir.D01G117050 Gossypium hirsutum
Gohir.D02G156800 Gossypium hirsutum
Gohir.D12G257550 Gossypium hirsutum
Gorai.002G142300 Gossypium raimondii
Gorai.005G175900 Gossypium raimondii
Gorai.008G275800 Gossypium raimondii
GSVIVG01000568001 Vitis vinifera
GSVIVG01028910001 Vitis vinifera
HanXRQChr08g0208411 Helianthus annuus
HanXRQChr13g0392831 Helianthus annuus
HanXRQChr17g0539881 Helianthus annuus
Haze_00012 Corylus avellana
Haze_12277 Corylus avellana
Hma1.2p1_0815F.1_g222740 Hydrangea macrophylla
HPP92_024523 Vanilla planifolia
Hund06043 Selenicereus undatus
Hund11735 Selenicereus undatus
Hund25403 Selenicereus undatus
Lalb_Chr07g0185491 Lupinus albus
Lalb_Chr12g0204071 Lupinus albus
Lj1C1001T3 Lonicera japonica
Lj3C1061T13 Lonicera japonica
Lj4g0010011 Lotus japonicus
Lj5g0013689 Lotus japonicus
Lj6C815T10 Lonicera japonica
Lsat_1_v5_gn_3_30180 Lactuca sativa
Lsat_1_v5_gn_8_152881 Lactuca sativa
Manes.06G149700 Manihot esculenta
Manes.12G020500 Manihot esculenta
Manes.13G021100 Manihot esculenta
Mapoly0059s0041 Marchantia polymorpha
MBI06_g16051_MAGBIO Magnolia biondii
MBI17_g24688_MAGBIO Magnolia biondii
MD01G1204900 Malus domestica
MD07G1273400 Malus domestica
MD13G1104300 Malus domestica
MD16G1104400 Malus domestica
Medtr1g100880 Medicago truncatula
Medtr5g045350 Medicago truncatula
Medtr6g036520 Medicago truncatula
Medtr8g089685 Medicago truncatula
MELO3C026691.2 Cucumis melo
Migut.K00624 Erythranthe guttata
MSTRG.554 Avicennia marina
Nitab4.5_0000084g0090 Nicotiana tabacum
Nitab4.5_0000524g0040 Nicotiana tabacum
Nitab4.5_0004439g0010 Nicotiana tabacum
Nn1g01540 Nelumbo nucifera
Nn2g10227 Nelumbo nucifera
Nn3g16663 Nelumbo nucifera
Nn3g21049 Nelumbo nucifera
Nn3g21050 Nelumbo nucifera
Nn4g22554 Nelumbo nucifera
Nn6g33416 Nelumbo nucifera
Oeu028435.1 Olea europaea
Oeu031875.1 Olea europaea
Oeu031876.1 Olea europaea
Oeu057550.2 Olea europaea
Os08g0559800 Oryza sativa ssp. japonica
Os09g0565400 Oryza sativa ssp. japonica
Peaxi162Scf00128g00052 Petunia axillaris
Peaxi162Scf00444g00423 Petunia axillaris
PGR042G0877 Punica granatum
PGR119G2294 Punica granatum
PGSC0003DMG400011723 Solanum tuberosum
PGSC0003DMG400015798 Solanum tuberosum
Phvul.002G258700 Phaseolus vulgaris
Phvul.007G072200 Phaseolus vulgaris
Potri.008G183800 Populus trichocarpa
Potri.008G184600 Populus trichocarpa
Potri.010G049400 Populus trichocarpa
Potri.015G146100 Populus trichocarpa
Pp3c19_17030 Physcomitrium patens
Prupe.1G242200 Prunus persica
Prupe.2G297300 Prunus persica
Psat6g197240 Pisum sativum
Psat7g058840 Pisum sativum
PSO063G0918 Papaver somniferum
PSO478G4759 Papaver somniferum
PSO754G0096 Papaver somniferum
PSO782G0118 Papaver somniferum
QL03p056617 Quercus lobata
RcHm_v2.0_Chr1g0377801 Rosa chinensis
RcHm_v2.0_Chr4g0432671 Rosa chinensis
Rhsim03G0188000 Rhododendron simsii
Rhsim12G0108100 Rhododendron simsii
Sabra08G0139900 Salix brachista
Sabra10G0019900 Salix brachista
Sabra15G0155400 Salix brachista
SalBow2G2458 Salvia bowleyana
Sc11g0000860 Simmondsia chinensis
Sc19g0001400 Simmondsia chinensis
Sed0000402 Sechium edule
Sed0007520 Sechium edule
SEGI_36472 Sequoiadendron giganteum
SEGI_37581 Sequoiadendron giganteum
SEGI_40161 Sequoiadendron giganteum
SEGI_40759 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29580 Striga asiatica
SHI17834 Sapria himalayana
SHI17835 Sapria himalayana
SMO145G0099 Selaginella moellendorffii
Solyc03g025460.3 Solanum lycopersicum
Solyc05g013780.3 Solanum lycopersicum
Sopen03g004300 Solanum pennellii
Sopen05g008700 Solanum pennellii
Sp1g23230 Schrenkiella parvula
Sp5g13020 Schrenkiella parvula
TAR374G0524 Trochodendron aralioides
TAR374G0570 Trochodendron aralioides
TAR375G0227 Trochodendron aralioides
TAR622G0609 Trochodendron aralioides
TAR629G3527 Trochodendron aralioides
THA.LOC104798626 Tarenaya hassleriana
THA.LOC104820571 Tarenaya hassleriana
THA.LOC104825550 Tarenaya hassleriana
Thecc.02G264600 Theobroma cacao
Thecc.03G179800 Theobroma cacao
Thhalv10006977m.g Eutrema salsugineum
Thhalv10010940m.g Eutrema salsugineum
Thhalv10010995m.g Eutrema salsugineum
TPR.G26973 Trifolium pratense
TPR.G6192 Trifolium pratense
TWI18G0350 Tripterygium wilfordii
TWI39G0831 Tripterygium wilfordii
TWI75G0863 Tripterygium wilfordii
unitig_699.g19941 Utricularia gibba
unitig_747.g21138 Utricularia gibba
vmacro06657 Vaccinium macrocarpon
vmacro16176 Vaccinium macrocarpon
VMungo0251G2460 Vigna mungo
VMungo0251G3376 Vigna mungo
Zm00001eb096260 Zea mays
Zm00001eb306940 Zea mays

User provided reference genes

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