Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p20180 Brassica napus
A03p48200 Brassica napus
A07p03010 Brassica napus
A07p41250 Brassica napus
A09p44240 Brassica napus
Aa31LG4G19260 Aethionema arabicum
Aa31LG4G5950 Aethionema arabicum
Aa31LG8G15110 Aethionema arabicum
Actinidia15417 Actinidia chinensis
Actinidia16982 Actinidia chinensis
Actinidia28594 Actinidia chinensis
Actinidia37931 Actinidia chinensis
Ah.05g166750 Amaranthus hybridus
AL2G35710 Arabidopsis lyrata
AL3G50960 Arabidopsis lyrata
AL5G31620 Arabidopsis lyrata
Aqoxy4G02812 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.70B03Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AUK4Q1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T25A5J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TT5BBF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WCXD6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XUCY0D Arachis hypogaea
AT1G75720 Arabidopsis thaliana
AT2G17940 Arabidopsis thaliana
AT3G51220 Arabidopsis thaliana
ATR0481G002 Amborella trichopoda
ATR0481G008 Amborella trichopoda
Atru.chr13.302 Acer truncatum
AUR62003372 Chenopodium quinoa
AUR62029460 Chenopodium quinoa
AUR62033833 Chenopodium quinoa
AUR62035749 Chenopodium quinoa
BcaB03g16573 Brassica carinata
BcaB05g24936 Brassica carinata
BcaC03g15617 Brassica carinata
BcaC06g33045 Brassica carinata
BcaC06g33047 Brassica carinata
BcaC06g36341 Brassica carinata
BcaC08g47048 Brassica carinata
BolC2t09330H Brassica oleracea
BolC6t40006H Brassica oleracea
BolC7t40913H Brassica oleracea
BolC7t45139H Brassica oleracea
BolC8t50264H Brassica oleracea
BraA02t07053Z Brassica rapa
BraA03t13928Z Brassica rapa
BraA07t28098Z Brassica rapa
BraA07t31660Z Brassica rapa
BraA09t39886Z Brassica rapa
C02p33750 Brassica napus
C06p49670 Brassica napus
C07p05150 Brassica napus
C07p46230 Brassica napus
C08p26500 Brassica napus
CAN.G1671.11 Capsicum annuum
CAN.G1735.2 Capsicum annuum
CAN.G311.24 Capsicum annuum
CAN.G849.11 Capsicum annuum
CANSAT01G1513 Cannabis sativa
CANSAT25G0605 Cannabis sativa
CARHR069130 Cardamine hirsuta
CARHR108420 Cardamine hirsuta
CARHR160800 Cardamine hirsuta
Carub.0002s2257 Capsella rubella
Carub.0003s3207 Capsella rubella
Carub.0005s1759 Capsella rubella
Ca_15484_v3 Cicer arietinum L.
Ca_25826_v3 Cicer arietinum L.
Cc07_g10690 Coffea canephora
Cc10_g01730 Coffea canephora
CDE05G2569 Ceratophyllum demersum
CDE05G2590 Ceratophyllum demersum
Cfa013943 Carpinus fangiana
Ciclev10002504m.g Citrus clementina
Ciclev10010690m.g Citrus clementina
CiPaw.07G150800 Carya illinoinensis
CiPaw.08G066000 Carya illinoinensis
CiPaw.08G131700 Carya illinoinensis
ClCG01G020290 Citrullus lanatus
ClCG05G018310 Citrullus lanatus
ClCG08G014340 Citrullus lanatus
ClCG08G014350 Citrullus lanatus
COL.COLO4_21913 Corchorus olitorius
COL.COLO4_26155 Corchorus olitorius
Cpa.g.sc26.35 Carica papaya
Cpa.g.sc6.246 Carica papaya
CsaV3_2G029480 Cucumis sativus L.
CsaV3_3G045810 Cucumis sativus L.
CsaV3_6G047080 Cucumis sativus L.
CSS0007330 Camellia sinensis var. sinensis
CSS0015710 Camellia sinensis var. sinensis
DCAR_013866 Daucus carota
DCAR_016609 Daucus carota
DCAR_020045 Daucus carota
Dinv31838 Davidia involucrata
Dinv39512 Davidia involucrata
Dinv40084 Davidia involucrata
Duzib041G0251 Durio zibethinus
Duzib093G0349 Durio zibethinus
Duzib187G0363 Durio zibethinus
Duzib264G1257 Durio zibethinus
ECA232G3113 Erigeron canadensis
ECA238G3838 Erigeron canadensis
ECA238G4826 Erigeron canadensis
EL10Ac1g02294 Beta vulgaris
EL10Ac6g15477 Beta vulgaris
Eucgr.F00599 Eucalyptus grandis
Eucgr.F01646 Eucalyptus grandis
Eucgr.I02352 Eucalyptus grandis
FAN15G3636 Fragaria x ananassa
FAN19G2360 Fragaria x ananassa
FAN20G0494 Fragaria x ananassa
FAN26G1121 Fragaria x ananassa
FAN27G2774 Fragaria x ananassa
FAN28G1441 Fragaria x ananassa
FvH4_1g11870 Fragaria vesca
FvH4_2g38540 Fragaria vesca
Glyma.01G166500 Glycine max
Glyma.04G024600 Glycine max
Glyma.06G024700 Glycine max
Glyma.11G076800 Glycine max
Gohir.A02G170500 Gossypium hirsutum
Gohir.A05G257100 Gossypium hirsutum
Gohir.A06G004600 Gossypium hirsutum
Gohir.A11G175640 Gossypium hirsutum
Gohir.D03G009550 Gossypium hirsutum
Gohir.D05G258600 Gossypium hirsutum
Gohir.D06G000400 Gossypium hirsutum
Gohir.D11G183400 Gossypium hirsutum
Gorai.003G009800 Gossypium raimondii
Gorai.007G195200 Gossypium raimondii
Gorai.009G270100 Gossypium raimondii
Gorai.010G004800 Gossypium raimondii
GSVIVG01009898001 Vitis vinifera
HanXRQChr09g0256611 Helianthus annuus
HanXRQChr13g0414671 Helianthus annuus
HanXRQChr14g0430361 Helianthus annuus
Haze_03766 Corylus avellana
Haze_22627 Corylus avellana
Hma1.2p1_0956F.1_g241350 Hydrangea macrophylla
Hma1.2p1_0956F.1_g241360 Hydrangea macrophylla
Hma1.2p1_2239F.1_g317813 Hydrangea macrophylla
HPP92_022114 Vanilla planifolia
Lalb_Chr09g0321761 Lupinus albus
Lalb_Chr11g0061941 Lupinus albus
Lalb_Chr14g0369851 Lupinus albus
Lj1g0023294 Lotus japonicus
Lj2g0022128 Lotus japonicus
Lj4A218T51 Lonicera japonica
Lj4A25T51 Lonicera japonica
Lsat_1_v5_gn_2_10300 Lactuca sativa
Lsat_1_v5_gn_2_75901 Lactuca sativa
Lsat_1_v5_gn_4_146600 Lactuca sativa
Manes.02G104300 Manihot esculenta
Manes.05G148000 Manihot esculenta
Manes.18G014100 Manihot esculenta
MBI05_g15357_MAGBIO Magnolia biondii
MD02G1132800 Malus domestica
MD08G1013500 Malus domestica
MD15G1013000 Malus domestica
MD15G1245800 Malus domestica
Medtr3g113810 Medicago truncatula
Medtr4g040170 Medicago truncatula
Medtr5g021990 Medicago truncatula
MELO3C003756.2 Cucumis melo
MELO3C007901.2 Cucumis melo
MELO3C011007.2 Cucumis melo
Migut.C00825 Erythranthe guttata
Migut.N03157 Erythranthe guttata
MSTRG.1199 Avicennia marina
MSTRG.23411 Avicennia marina
MSTRG.2712 Avicennia marina
Nitab4.5_0000337g0140 Nicotiana tabacum
Nitab4.5_0000438g0050 Nicotiana tabacum
Nitab4.5_0002561g0070 Nicotiana tabacum
Nitab4.5_0003271g0010 Nicotiana tabacum
Nitab4.5_0006119g0020 Nicotiana tabacum
Nitab4.5_0006286g0080 Nicotiana tabacum
Nitab4.5_0010507g0010 Nicotiana tabacum
Nn5g30157 Nelumbo nucifera
Oeu005316.1 Olea europaea
Oeu054697.1 Olea europaea
Os04g0116200 Oryza sativa ssp. japonica
Os04g0116900 Oryza sativa ssp. japonica
Peaxi162Scf00034g02717 Petunia axillaris
Peaxi162Scf00083g00420 Petunia axillaris
Peaxi162Scf00083g00513 Petunia axillaris
Peaxi162Scf00400g00048 Petunia axillaris
Peaxi162Scf00438g00717 Petunia axillaris
PGR031G0175 Punica granatum
PGR119G0867 Punica granatum
PGSC0003DMG400003639 Solanum tuberosum
PGSC0003DMG400009934 Solanum tuberosum
PGSC0003DMG400022533 Solanum tuberosum
Phvul.002G109000 Phaseolus vulgaris
Phvul.009G016600 Phaseolus vulgaris
Potri.002G023000 Populus trichocarpa
Potri.005G114400 Populus trichocarpa
Potri.005G238500 Populus trichocarpa
Prupe.1G366100 Prunus persica
Psat2g154760 Pisum sativum
Psat5g013240 Pisum sativum
PSO541G3760 Papaver somniferum
PSO675G6292 Papaver somniferum
QL02p011493 Quercus lobata
QL06p032701 Quercus lobata
QL12p007127 Quercus lobata
RcHm_v2.0_Chr2g0099471 Rosa chinensis
RcHm_v2.0_Chr6g0302771 Rosa chinensis
Rhsim07G0246900 Rhododendron simsii
Sabra02G0018800 Salix brachista
Sabra05G0093600 Salix brachista
Sabra05G0184300 Salix brachista
SalBow3G1681 Salvia bowleyana
SalBow7G2684 Salvia bowleyana
Sc15g0005030 Simmondsia chinensis
Sc16g0002170 Simmondsia chinensis
Sed0000676 Sechium edule
Sed0015402 Sechium edule
Sed0017313 Sechium edule
Sed0027761 Sechium edule
SGA_v2.0_scaffold11G05914 Striga asiatica
SGA_v2.0_scaffold12G05967 Striga asiatica
SGA_v2.0_scaffold92G28240 Striga asiatica
SHI08071 Sapria himalayana
Solyc02g083910.4 Solanum lycopersicum
Solyc02g083920.1 Solanum lycopersicum
Solyc03g033550.3 Solanum lycopersicum
Solyc04g081390.4 Solanum lycopersicum
Sopen02g028700 Solanum pennellii
Sopen03g006340 Solanum pennellii
Sopen04g035000 Solanum pennellii
Sp3g31360 Schrenkiella parvula
Sp5g11000 Schrenkiella parvula
Sp5g30840 Schrenkiella parvula
TAR381G0589 Trochodendron aralioides
TAR381G1099 Trochodendron aralioides
TAR625G0479 Trochodendron aralioides
THA.LOC104807494 Tarenaya hassleriana
THA.LOC104811385 Tarenaya hassleriana
THA.LOC104821326 Tarenaya hassleriana
Thecc.01G019200 Theobroma cacao
Thecc.08G043600 Theobroma cacao
Thhalv10010735m.g Eutrema salsugineum
Thhalv10019714m.g Eutrema salsugineum
Thhalv10023066m.g Eutrema salsugineum
TPR.G18174 Trifolium pratense
TPR.G34544 Trifolium pratense
TWI36G0177 Tripterygium wilfordii
TWI56G0437 Tripterygium wilfordii
TWI73G0139 Tripterygium wilfordii
unitig_748.g7771 Utricularia gibba
vmacro04348 Vaccinium macrocarpon
vmacro21919 Vaccinium macrocarpon
VMungo1215G1105 Vigna mungo
VMungo1309G1856 Vigna mungo
Zm00001eb089230 Zea mays

User provided reference genes

Program Settings