Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p12980 Brassica napus
A10p13130 Brassica napus
Aa31LG3G11860 Aethionema arabicum
Aa31LG3G13000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1699 Anthoceros agrestis
Actinidia01296 Actinidia chinensis
Actinidia30381 Actinidia chinensis
Ah.02g113510 Amaranthus hybridus
AL7G40270 Arabidopsis lyrata
AL8G31510 Arabidopsis lyrata
AL8G33010 Arabidopsis lyrata
Aqoxy23s011 Aquilegia oxysepala
Aqoxy23s012 Aquilegia oxysepala
Aqoxy7G02911 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0JIR1Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.40AFZ3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G1W5H1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YX70Z8 Arachis hypogaea
AT5G55950 Arabidopsis thaliana
AT5G57100 Arabidopsis thaliana
ATR0724G002 Amborella trichopoda
ATR0724G084 Amborella trichopoda
ATR0787G212 Amborella trichopoda
Atru.chr2.3747 Acer truncatum
Atru.chr2.3761 Acer truncatum
Atru.chr7.900_Atru.chr7.901 Acer truncatum
AUR62017139 Chenopodium quinoa
AUR62027429 Chenopodium quinoa
AUR62031266 Chenopodium quinoa
AUR62035668 Chenopodium quinoa
BcaB01g04444 Brassica carinata
BcaB08g35960 Brassica carinata
BcaC01g06466 Brassica carinata
BcaC04g20186 Brassica carinata
BcaNung05126 Brassica carinata
BolC3t13956H Brassica oleracea
BolC9t57539H Brassica oleracea
BraA03t10606Z Brassica rapa
BraA10t43409Z Brassica rapa
C03p15150 Brassica napus
C09p46890 Brassica napus
CAN.G1495.6 Capsicum annuum
CAN.G67.8 Capsicum annuum
CANSAT11G1102 Cannabis sativa
CARHR269320 Cardamine hirsuta
CARHR270870 Cardamine hirsuta
Carub.0008s1628 Capsella rubella
Carub.0008s1760 Capsella rubella
Ca_02130_v3 Cicer arietinum L.
Ca_06411_v3 Cicer arietinum L.
Cc05_g15170 Coffea canephora
Cc06_g12950 Coffea canephora
CDE04G2437 Ceratophyllum demersum
Cfa013474 Carpinus fangiana
Cfa016924 Carpinus fangiana
Ciclev10008581m.g Citrus clementina
Ciclev10008616m.g Citrus clementina
CiPaw.07G199400 Carya illinoinensis
CiPaw.08G031200 Carya illinoinensis
CiPaw.12G140200 Carya illinoinensis
ClCG06G013800 Citrullus lanatus
ClCG10G004350 Citrullus lanatus
COL.COLO4_07737 Corchorus olitorius
COL.COLO4_12067 Corchorus olitorius
COL.COLO4_30866 Corchorus olitorius
COL.COLO4_34334 Corchorus olitorius
Cpa.g.sc115.57 Carica papaya
Cpa.g.sc115.58 Carica papaya
Cpa.g.sc115.59 Carica papaya
Cpa.g.sc12.133 Carica papaya
CsaV3_1G032020 Cucumis sativus L.
CsaV3_3G004130 Cucumis sativus L.
CSS0003730 Camellia sinensis var. sinensis
CSS0014501 Camellia sinensis var. sinensis
CSS0035618 Camellia sinensis var. sinensis
DCAR_014678 Daucus carota
DCAR_017998 Daucus carota
Dinv40881 Davidia involucrata
Dinv41201 Davidia involucrata
Duzib147G0377 Durio zibethinus
Duzib150G1305 Durio zibethinus
Duzib168G1533 Durio zibethinus
Duzib168G1754 Durio zibethinus
Duzib170G0860 Durio zibethinus
Duzib213G0538 Durio zibethinus
ECA236G3448 Erigeron canadensis
ECA236G3796 Erigeron canadensis
EL10Ac4g07532 Beta vulgaris
EL10Ac8g19293 Beta vulgaris
Eucgr.C00079 Eucalyptus grandis
Eucgr.F02032 Eucalyptus grandis
FAN07G2161 Fragaria x ananassa
FAN11G2461 Fragaria x ananassa
FAN12G0722 Fragaria x ananassa
FAN12G1192 Fragaria x ananassa
FAN17G0178 Fragaria x ananassa
FAN21G1517 Fragaria x ananassa
FAN22G1602 Fragaria x ananassa
FAN25G1768 Fragaria x ananassa
FvH4_3g42500 Fragaria vesca
FvH4_4g01840 Fragaria vesca
FvH4_4g06880 Fragaria vesca
Glyma.02G302100 Glycine max
Glyma.09G061700 Glycine max
Glyma.13G101800 Glycine max
Glyma.14G012100 Glycine max
Glyma.15G168000 Glycine max
Glyma.17G057400 Glycine max
Gohir.A01G093350 Gossypium hirsutum
Gohir.A04G005600 Gossypium hirsutum
Gohir.A05G001600 Gossypium hirsutum
Gohir.A11G224806 Gossypium hirsutum
Gohir.D01G077850 Gossypium hirsutum
Gohir.D05G001900 Gossypium hirsutum
Gohir.D05G384100 Gossypium hirsutum
Gohir.D11G229100 Gossypium hirsutum
Gorai.002G102400 Gossypium raimondii
Gorai.003G068600 Gossypium raimondii
Gorai.009G001800 Gossypium raimondii
Gorai.009G450900 Gossypium raimondii
GSVIVG01014731001 Vitis vinifera
GSVIVG01029267001 Vitis vinifera
HanXRQChr05g0139881 Helianthus annuus
HanXRQChr06g0179351 Helianthus annuus
HanXRQChr11g0334401 Helianthus annuus
Haze_09855 Corylus avellana
Haze_22051 Corylus avellana
Hma1.2p1_0178F.1_g078550 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078580 Hydrangea macrophylla
Hma1.2p1_0726F.1_g209010 Hydrangea macrophylla
HPP92_015787 Vanilla planifolia
HPP92_015788 Vanilla planifolia
HPP92_015791 Vanilla planifolia
HPP92_015792 Vanilla planifolia
HPP92_017130 Vanilla planifolia
Hund23053 Selenicereus undatus
Hund25856 Selenicereus undatus
Lalb_Chr07g0180751 Lupinus albus
Lalb_Chr10g0107491 Lupinus albus
Lalb_Chr12g0199681 Lupinus albus
Lalb_Chr17g0349001 Lupinus albus
Lalb_Chr23g0276621 Lupinus albus
Lj4g0010154 Lotus japonicus
Lj5A611G51 Lonicera japonica
Lj5A614G13 Lonicera japonica
Lj6g0004640 Lotus japonicus
Lj8A180T99 Lonicera japonica
LjContig00081g0022712 Lotus japonicus
Lsat_1_v5_gn_8_68460 Lactuca sativa
Manes.06G000200 Manihot esculenta
Manes.15G057700 Manihot esculenta
MBI14_g10733_MAGBIO Magnolia biondii
MBI16_g09346_MAGBIO Magnolia biondii
MD11G1035900 Malus domestica
MD13G1241400 Malus domestica
MD16G1244800 Malus domestica
Medtr2g038410 Medicago truncatula
Medtr2g038440 Medicago truncatula
Medtr5g096310 Medicago truncatula
MELO3C014109.2 Cucumis melo
MELO3C029733.2 Cucumis melo
Migut.H01741 Erythranthe guttata
Migut.J01507 Erythranthe guttata
MSTRG.14499 Avicennia marina
MSTRG.19723 Avicennia marina
MSTRG.6243 Avicennia marina
Nitab4.5_0000163g0090 Nicotiana tabacum
Nitab4.5_0000756g0050 Nicotiana tabacum
Nitab4.5_0000957g0070 Nicotiana tabacum
Nitab4.5_0000957g0110 Nicotiana tabacum
Nitab4.5_0010151g0020 Nicotiana tabacum
Nitab4.5_0010151g0050 Nicotiana tabacum
Nn1g07558 Nelumbo nucifera
Nn5g28278 Nelumbo nucifera
Nn8g40640 Nelumbo nucifera
Oeu009078.1 Olea europaea
Oeu017992.1 Olea europaea
Os02g0724500 Oryza sativa ssp. japonica
Os06g0297600 Oryza sativa ssp. japonica
Peaxi162Scf00006g00534 Petunia axillaris
Peaxi162Scf01566g00024 Petunia axillaris
PGR083G0660 Punica granatum
PGR142G2228 Punica granatum
PGSC0003DMG400018755 Solanum tuberosum
PGSC0003DMG400029808 Solanum tuberosum
Phvul.003G139700 Phaseolus vulgaris
Phvul.008G280700 Phaseolus vulgaris
Phvul.009G234300 Phaseolus vulgaris
Potri.001G370800 Populus trichocarpa
Potri.006G072500 Populus trichocarpa
Potri.018G139500 Populus trichocarpa
Prupe.1G071900 Prunus persica
Prupe.6G026800 Prunus persica
Psat0s187g0040 Pisum sativum
Psat0s4904g0040 Pisum sativum
Psat1g142320 Pisum sativum
Psat2g006560 Pisum sativum
Psat2g104360 Pisum sativum
Psat5g015760 Pisum sativum
Psat5g256480 Pisum sativum
Psat6g069960 Pisum sativum
PSO063G5866 Papaver somniferum
PSO170G2221 Papaver somniferum
PSO541G0441 Papaver somniferum
PSO675G1903 Papaver somniferum
QL02p064689 Quercus lobata
QL02p064697 Quercus lobata
QL08p003281 Quercus lobata
RcHm_v2.0_Chr4g0398791 Rosa chinensis
RcHm_v2.0_Chr5g0076161 Rosa chinensis
Rhsim01G0120700 Rhododendron simsii
Rhsim06G0232200 Rhododendron simsii
Sabra06G0053800 Salix brachista
Sabra06G0053900 Salix brachista
Sabra16G0243400 Salix brachista
Sabra18G0114000 Salix brachista
SalBow6G3459 Salvia bowleyana
Sc03g0011600 Simmondsia chinensis
Sc14g0003120 Simmondsia chinensis
Sed0001096 Sechium edule
Sed0011080 Sechium edule
SEGI_12861 Sequoiadendron giganteum
SEGI_19663 Sequoiadendron giganteum
SEGI_24249 Sequoiadendron giganteum
SGA_v2.0_scaffold42G15952 Striga asiatica
SGA_v2.0_scaffold66G22440 Striga asiatica
SMO146G0277 Selaginella moellendorffii
Solyc02g150113.1 Solanum lycopersicum
Solyc07g006910.4 Solanum lycopersicum
Solyc12g015850.1 Solanum lycopersicum
Sopen07g003010 Solanum pennellii
Sopen12g007730 Solanum pennellii
Sp6g17800 Schrenkiella parvula
Sp6g18830 Schrenkiella parvula
TAR624G0939 Trochodendron aralioides
TAR626G1427 Trochodendron aralioides
THA.LOC104811762 Tarenaya hassleriana
THA.LOC104817713 Tarenaya hassleriana
THA.LOC104817768 Tarenaya hassleriana
Thecc.01G138800 Theobroma cacao
Thecc.07G008700 Theobroma cacao
Thecc.09G190700 Theobroma cacao
Thecc.09G191900 Theobroma cacao
Thhalv10013740m.g Eutrema salsugineum
Thhalv10013779m.g Eutrema salsugineum
TPR.G1265 Trifolium pratense
TPR.G2542 Trifolium pratense
TWI32G0862 Tripterygium wilfordii
TWI39G0766 Tripterygium wilfordii
unitig_0.g989 Utricularia gibba
unitig_21.g20653 Utricularia gibba
unitig_744.g24141 Utricularia gibba
vmacro11610 Vaccinium macrocarpon
vmacro20838 Vaccinium macrocarpon
VMungo0647G0192 Vigna mungo
VMungo1215G2688 Vigna mungo
VMungo1309G2942 Vigna mungo
Zm00001eb253160 Zea mays
Zm00001eb281030 Zea mays

User provided reference genes

Program Settings