Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p31570 Brassica napus
A06p44820 Brassica napus
Aa31sc219G60 Aethionema arabicum
Actinidia02281 Actinidia chinensis
Actinidia14194 Actinidia chinensis
Ah.09g233840 Amaranthus hybridus
AL8G10210 Arabidopsis lyrata
Aqoxy3G01205 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.28F7LT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P3E3V7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QD9R4Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2N233 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZTBZ6L Arachis hypogaea
AT5G47740 Arabidopsis thaliana
ATR0824G127 Amborella trichopoda
Atru.chr1.2243 Acer truncatum
Atru.chr9.2561 Acer truncatum
AUR62008154 Chenopodium quinoa
AUR62012858 Chenopodium quinoa
AUR62021807 Chenopodium quinoa
BcaC03g16988 Brassica carinata
BcaC06g34227 Brassica carinata
BolC2t10984H Brassica oleracea
BolC7t43680H Brassica oleracea
BraA02t08157Z Brassica rapa
BraA06t27354Z Brassica rapa
C02p48890 Brassica napus
C07p31380 Brassica napus
CAN.G1263.3 Capsicum annuum
CAN.G1473.3 Capsicum annuum
CAN.G338.23 Capsicum annuum
CAN.G993.22 Capsicum annuum
CANSAT56G4022 Cannabis sativa
CANSAT64G0214 Cannabis sativa
CANSAT80G0636 Cannabis sativa
CARHR173580 Cardamine hirsuta
Carub.0008s0004 Capsella rubella
Ca_00769_v3 Cicer arietinum L.
Ca_14270_v3 Cicer arietinum L.
Ca_20987_v3 Cicer arietinum L.
Ca_20988_v3 Cicer arietinum L.
CBR_g52370 Chara braunii
Cc04_g11710 Coffea canephora
Cc09_g00260 Coffea canephora
CDE10G0794 Ceratophyllum demersum
CDE10G1277 Ceratophyllum demersum
Cfa000025 Carpinus fangiana
Cfa000052 Carpinus fangiana
Cfa019206 Carpinus fangiana
Ciclev10016013m.g Citrus clementina
Ciclev10021791m.g Citrus clementina
CiPaw.09G109600 Carya illinoinensis
CiPaw.10G082900 Carya illinoinensis
CiPaw.11G021400 Carya illinoinensis
ClCG01G011280 Citrullus lanatus
ClCG01G021190 Citrullus lanatus
ClCG06G001960 Citrullus lanatus
COL.COLO4_05567 Corchorus olitorius
COL.COLO4_31946 Corchorus olitorius
Cpa.g.sc110.4 Carica papaya
Cpa.g.sc27.218 Carica papaya
CsaV3_1G001130 Cucumis sativus L.
CsaV3_1G015590 Cucumis sativus L.
CsaV3_6G008020 Cucumis sativus L.
CsaV3_6G048200 Cucumis sativus L.
CSS0012457 Camellia sinensis var. sinensis
CSS0023137 Camellia sinensis var. sinensis
CSS0025007 Camellia sinensis var. sinensis
DCAR_016457 Daucus carota
DCAR_028370 Daucus carota
Dinv07155 Davidia involucrata
Dinv38539 Davidia involucrata
Duzib068G1337 Durio zibethinus
Duzib192G0266 Durio zibethinus
Duzib205G0806 Durio zibethinus
ECA246G4176 Erigeron canadensis
EL10Ac5g10665 Beta vulgaris
EL10Ac8g20271 Beta vulgaris
EL10Ac8g20272 Beta vulgaris
Eucgr.E03841 Eucalyptus grandis
Eucgr.E03842 Eucalyptus grandis
Eucgr.E03844 Eucalyptus grandis
Eucgr.K02804 Eucalyptus grandis
FAN04G0990 Fragaria x ananassa
FAN08G0747 Fragaria x ananassa
FAN13G2482 Fragaria x ananassa
FAN18G1606 Fragaria x ananassa
FAN21G0857 Fragaria x ananassa
FAN22G0972 Fragaria x ananassa
FAN25G2183 Fragaria x ananassa
FvH4_3g00270 Fragaria vesca
FvH4_4g32790 Fragaria vesca
FvH4_5g06120 Fragaria vesca
Glyma.05G041100 Glycine max
Glyma.07G268750 Glycine max
Glyma.07G268800 Glycine max
Glyma.09G015200 Glycine max
Glyma.15G121000 Glycine max
Glyma.15G121100 Glycine max
Glyma.17G004900 Glycine max
Glyma.17G005000 Glycine max
Glyma.17G085200 Glycine max
Gohir.A06G203701 Gossypium hirsutum
Gohir.D06G218100 Gossypium hirsutum
Gorai.010G248200 Gossypium raimondii
GSVIVG01002204001 Vitis vinifera
GSVIVG01007663001 Vitis vinifera
HanXRQChr05g0155321 Helianthus annuus
HanXRQChr16g0515711 Helianthus annuus
Haze_07000 Corylus avellana
Haze_07030 Corylus avellana
Haze_07031 Corylus avellana
Haze_07032 Corylus avellana
Haze_07573 Corylus avellana
Hma1.2p1_0046F.1_g027040 Hydrangea macrophylla
Hma1.2p1_1175F.1_g264120 Hydrangea macrophylla
HPP92_015786 Vanilla planifolia
HPP92_015793 Vanilla planifolia
Hund21127 Selenicereus undatus
Lalb_Chr07g0176911 Lupinus albus
Lalb_Chr20g0119581 Lupinus albus
Lj2g0018534 Lotus japonicus
Lj3g0019862 Lotus japonicus
Lj4g0000891 Lotus japonicus
Lj4g0023840 Lotus japonicus
Lj4g0025839 Lotus japonicus
Lj5A129T72 Lonicera japonica
Lj6g0007328 Lotus japonicus
Lj6g0025630 Lotus japonicus
Lsat_1_v5_gn_4_64060 Lactuca sativa
Lsat_1_v5_gn_5_14161 Lactuca sativa
Manes.09G084200 Manihot esculenta
Manes.14G061300 Manihot esculenta
MBI11_g09535_MAGBIO Magnolia biondii
MBI15_g18594_MAGBIO Magnolia biondii
MBI15_g24507_MAGBIO Magnolia biondii
MBI15_g31884_MAGBIO Magnolia biondii
MBI15_g36663_MAGBIO Magnolia biondii
MD05G1362400 Malus domestica
MD06G1166500 Malus domestica
MD13G1022500 Malus domestica
MD14G1172200 Malus domestica
MD16G1023800 Malus domestica
Medtr4g105090 Medicago truncatula
Medtr4g134130 Medicago truncatula
Medtr4g134140 Medicago truncatula
MELO3C008004.2 Cucumis melo
MELO3C022333.2 Cucumis melo
MELO3C026093.2 Cucumis melo
MELO3C026262.2 Cucumis melo
Migut.M01450 Erythranthe guttata
Migut.O00147 Erythranthe guttata
MSTRG.11489 Avicennia marina
MSTRG.13104 Avicennia marina
Nitab4.5_0000025g0300 Nicotiana tabacum
Nitab4.5_0000147g0400 Nicotiana tabacum
Nitab4.5_0000147g0410 Nicotiana tabacum
Nitab4.5_0001566g0010 Nicotiana tabacum
Nitab4.5_0001683g0040 Nicotiana tabacum
Nitab4.5_0001793g0110 Nicotiana tabacum
Nitab4.5_0002334g0130 Nicotiana tabacum
Nitab4.5_0003703g0030 Nicotiana tabacum
Nitab4.5_0006294g0050 Nicotiana tabacum
Nitab4.5_0006294g0070 Nicotiana tabacum
Nitab4.5_0007495g0040 Nicotiana tabacum
Nn1g07769 Nelumbo nucifera
Nn1g07770 Nelumbo nucifera
Nn3g16713 Nelumbo nucifera
Oeu027444.1 Olea europaea
Oeu036512.1 Olea europaea
Oeu057015.1 Olea europaea
Os06g0291500 Oryza sativa ssp. japonica
Peaxi162Scf00089g01428 Petunia axillaris
Peaxi162Scf00811g00031 Petunia axillaris
Peaxi162Scf00827g00412 Petunia axillaris
PGR004G1691 Punica granatum
PGR042G0736 Punica granatum
PGR042G2084 Punica granatum
PGR044G1459 Punica granatum
PGSC0003DMG400018183 Solanum tuberosum
PGSC0003DMG400019746 Solanum tuberosum
PGSC0003DMG400026054 Solanum tuberosum
PGSC0003DMG400026986 Solanum tuberosum
Phvul.003G087900 Phaseolus vulgaris
Phvul.003G088000 Phaseolus vulgaris
Phvul.003G204300 Phaseolus vulgaris
Phvul.006G136600 Phaseolus vulgaris
Potri.006G003900 Populus trichocarpa
Potri.012G084700 Populus trichocarpa
Potri.015G083100 Populus trichocarpa
Prupe.1G329100 Prunus persica
Prupe.4G003000 Prunus persica
Prupe.5G166500 Prunus persica
Psat0s3230g0040 Pisum sativum
Psat0s3230g0080 Pisum sativum
Psat0s3230g0120 Pisum sativum
Psat0s473g0040 Pisum sativum
Psat4g060400 Pisum sativum
PSO541G1856 Papaver somniferum
PSO541G2480 Papaver somniferum
PSO675G9058 Papaver somniferum
QL05p066931 Quercus lobata
QL05p066957 Quercus lobata
QL05p067304 Quercus lobata
QL10p007255 Quercus lobata
RcHm_v2.0_Chr4g0441781 Rosa chinensis
RcHm_v2.0_Chr5g0000401 Rosa chinensis
RcHm_v2.0_Chr7g0192691 Rosa chinensis
Rhsim08G0176600 Rhododendron simsii
Rhsim08G0179000 Rhododendron simsii
Rhsim11G0055900 Rhododendron simsii
Rhsim13G0139800 Rhododendron simsii
Sabra06G0003300 Salix brachista
Sabra12G0060900 Salix brachista
SalBow1G0992 Salvia bowleyana
SalBow1G2284 Salvia bowleyana
SalBow5G2166 Salvia bowleyana
SalBow5G4247 Salvia bowleyana
Sc04g0001570 Simmondsia chinensis
Sc17g0008020 Simmondsia chinensis
Sed0010245 Sechium edule
Sed0017809 Sechium edule
Sed0027781 Sechium edule
SEGI_11032 Sequoiadendron giganteum
SEGI_11517 Sequoiadendron giganteum
SEGI_17291 Sequoiadendron giganteum
SEGI_29965 Sequoiadendron giganteum
SEGI_31692 Sequoiadendron giganteum
SEGI_31729 Sequoiadendron giganteum
SGA_v2.0_scaffold239G43977 Striga asiatica
Solyc01g090210.4 Solanum lycopersicum
Solyc03g112330.3 Solanum lycopersicum
Solyc04g015120.3 Solanum lycopersicum
Solyc06g071730.3 Solanum lycopersicum
Sopen01g036000 Solanum pennellii
Sopen03g031430 Solanum pennellii
Sopen04g007140 Solanum pennellii
Sopen06g028030 Solanum pennellii
Sp2g12440 Schrenkiella parvula
TAR374G0680 Trochodendron aralioides
TAR517G0005 Trochodendron aralioides
TAR622G0286 Trochodendron aralioides
THA.LOC104806741 Tarenaya hassleriana
Thecc.03G020100 Theobroma cacao
Thecc.06G241800 Theobroma cacao
Thhalv10001004m.g Eutrema salsugineum
TPR.G37541 Trifolium pratense
TPR.G5943 Trifolium pratense
TPR.G5969 Trifolium pratense
TWI23G1108 Tripterygium wilfordii
TWI63G0163 Tripterygium wilfordii
unitig_26.g10044 Utricularia gibba
vmacro03600 Vaccinium macrocarpon
vmacro19312 Vaccinium macrocarpon
VMungo0540G0592 Vigna mungo
VMungo0540G1084 Vigna mungo
VMungo1215G2500 Vigna mungo
VMungo1215G2924 Vigna mungo
Zm00001eb280970 Zea mays

User provided reference genes

Program Settings