Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19600 Brassica napus
A04p15650 Brassica napus
A07p29180 Brassica napus
A07p40540 Brassica napus
Aa31LG4G5120 Aethionema arabicum
Aa31LG9G1550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4800 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2154 Anthoceros agrestis
Actinidia01952 Actinidia chinensis
Actinidia06048 Actinidia chinensis
Actinidia19079 Actinidia chinensis
Actinidia34962 Actinidia chinensis
Ah.11g046220 Amaranthus hybridus
Ah.16g102260 Amaranthus hybridus
AL2G34790 Arabidopsis lyrata
AL3G42290 Arabidopsis lyrata
Aqoxy3G00898 Aquilegia oxysepala
Aqoxy3G03132 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.34H52E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0Q7X5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R1S0JT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RAA4HL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SEJH4Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZNHH9V Arachis hypogaea
AT1G74910 Arabidopsis thaliana
AT2G04650 Arabidopsis thaliana
ATR0730G110 Amborella trichopoda
Atru.chr9.2398 Acer truncatum
AUR62008286 Chenopodium quinoa
AUR62014575 Chenopodium quinoa
AUR62031050 Chenopodium quinoa
AUR62039386 Chenopodium quinoa
BcaB02g06971 Brassica carinata
BcaB05g24878 Brassica carinata
BcaB06g27744 Brassica carinata
BcaC02g08835 Brassica carinata
BcaC02g08837 Brassica carinata
BcaC03g15533 Brassica carinata
BcaC07g37251 Brassica carinata
BcaC08g46925 Brassica carinata
BcaC08g46965 Brassica carinata
BcaNung06479 Brassica carinata
BolC2t09252H Brassica oleracea
BolC4t26587H Brassica oleracea
BolC6t38423H Brassica oleracea
BolC6t39929H Brassica oleracea
BolC6t40242H Brassica oleracea
BolC7t45384H Brassica oleracea
BolC8t47520H Brassica oleracea
BraA02t06997Z Brassica rapa
BraA04t17200Z Brassica rapa
BraA07t30557Z Brassica rapa
BraA07t31599Z Brassica rapa
C02p32150 Brassica napus
C04p49940 Brassica napus
C06p33070 Brassica napus
C06p48930 Brassica napus
C06p52200 Brassica napus
C07p48760 Brassica napus
CAN.G390.34 Capsicum annuum
CAN.G399.1 Capsicum annuum
CAN.G853.17 Capsicum annuum
CANSAT80G1021 Cannabis sativa
CARHR068230 Cardamine hirsuta
CARHR102610 Cardamine hirsuta
Carub.0002s2170 Capsella rubella
Carub.0003s2627 Capsella rubella
Ca_04233_v3 Cicer arietinum L.
Ca_16212_v3 Cicer arietinum L.
CBR_g19791 Chara braunii
Cc07_g02720 Coffea canephora
CDE07G0556 Ceratophyllum demersum
Cfa019064 Carpinus fangiana
Ciclev10015419m.g Citrus clementina
Ciclev10020350m.g Citrus clementina
CiPaw.03G033400 Carya illinoinensis
CiPaw.11G032400 Carya illinoinensis
ClCG06G016670 Citrullus lanatus
ClCG10G014610 Citrullus lanatus
COL.COLO4_21436 Corchorus olitorius
COL.COLO4_23741 Corchorus olitorius
Cpa.g.sc35.35 Carica papaya
Cpa.g.sc35.36 Carica papaya
CsaV3_1G001840 Cucumis sativus L.
CsaV3_3G041970 Cucumis sativus L.
CSS0004387 Camellia sinensis var. sinensis
CSS0023021 Camellia sinensis var. sinensis
CSS0040200 Camellia sinensis var. sinensis
DCAR_013965 Daucus carota
DCAR_016508 Daucus carota
Dinv02660 Davidia involucrata
Dinv20701 Davidia involucrata
Dinv33677 Davidia involucrata
Dinv35010 Davidia involucrata
Duzib068G0230 Durio zibethinus
Duzib084G1053 Durio zibethinus
Duzib147G0415 Durio zibethinus
Duzib205G1985 Durio zibethinus
ECA232G1401 Erigeron canadensis
ECA232G3153 Erigeron canadensis
EL10Ac2g04635 Beta vulgaris
EL10Ac5g10836 Beta vulgaris
EL10Ac9g22536 Beta vulgaris
Eucgr.I01880 Eucalyptus grandis
Eucgr.K02882 Eucalyptus grandis
FAN02G2597 Fragaria x ananassa
FAN04G0780 Fragaria x ananassa
FAN05G1976 Fragaria x ananassa
FAN08G0851 Fragaria x ananassa
FAN09G3883 Fragaria x ananassa
FAN13G3001 Fragaria x ananassa
FAN14G2485 Fragaria x ananassa
FAN18G0705 Fragaria x ananassa
FvH4_5g16340 Fragaria vesca
FvH4_6g49920 Fragaria vesca
Glyma.04G178400 Glycine max
Glyma.06G186400 Glycine max
Glyma.19G050100 Glycine max
Glyma.19G072300 Glycine max
Gohir.A07G062800 Gossypium hirsutum
Gohir.A07G217300 Gossypium hirsutum
Gohir.D07G067400 Gossypium hirsutum
Gohir.D07G224300 Gossypium hirsutum
Gorai.001G071000 Gossypium raimondii
Gorai.001G258700 Gossypium raimondii
GSVIVG01007830001 Vitis vinifera
GSVIVG01032587001 Vitis vinifera
HanXRQChr04g0100201 Helianthus annuus
HanXRQChr09g0265791 Helianthus annuus
HanXRQChr09g0271691 Helianthus annuus
HanXRQChr13g0390461 Helianthus annuus
Haze_07434 Corylus avellana
Haze_14618 Corylus avellana
Hma1.2p1_0145F.1_g065180 Hydrangea macrophylla
Hma1.2p1_0375F.1_g138970 Hydrangea macrophylla
HPP92_012512 Vanilla planifolia
Hund09331 Selenicereus undatus
Hund09339 Selenicereus undatus
Hund09340 Selenicereus undatus
Hund10843 Selenicereus undatus
Hund16099 Selenicereus undatus
Hund29096 Selenicereus undatus
Hund29098 Selenicereus undatus
Hund31283 Selenicereus undatus
Hund31456 Selenicereus undatus
Lalb_Chr06g0176521 Lupinus albus
Lalb_Chr21g0319201 Lupinus albus
Lj1g0004664 Lotus japonicus
Lj2g0027925 Lotus japonicus
Lj7C407G10 Lonicera japonica
Lj9A454T69 Lonicera japonica
Lsat_1_v5_gn_4_180561 Lactuca sativa
Lsat_1_v5_gn_4_73600 Lactuca sativa
Manes.06G100100 Manihot esculenta
Manes.14G070700 Manihot esculenta
Manes.15G179700 Manihot esculenta
Mapoly0163s0013 Marchantia polymorpha
MD06G1181600 Malus domestica
MD09G1040800 Malus domestica
MD14G1187500 Malus domestica
MD17G1042000 Malus domestica
Medtr3g078570 Medicago truncatula
Medtr4g071670 Medicago truncatula
Medtr6g008840 Medicago truncatula
MELO3C009915.2 Cucumis melo
MELO3C017126.2 Cucumis melo
Migut.H00172 Erythranthe guttata
Migut.H02120 Erythranthe guttata
Migut.I00059 Erythranthe guttata
Migut.O00005 Erythranthe guttata
MSTRG.11429 Avicennia marina
MSTRG.23977 Avicennia marina
MSTRG.4389 Avicennia marina
MSTRG.9662 Avicennia marina
Nitab4.5_0000002g0580 Nicotiana tabacum
Nitab4.5_0000026g0360 Nicotiana tabacum
Nitab4.5_0003386g0070 Nicotiana tabacum
Nitab4.5_0004628g0010 Nicotiana tabacum
Nitab4.5_0005655g0050 Nicotiana tabacum
Nitab4.5_0011419g0010 Nicotiana tabacum
Nn3g17036 Nelumbo nucifera
Nn4g22929 Nelumbo nucifera
Nn7g36647 Nelumbo nucifera
Oeu005049.1 Olea europaea
Oeu022177.1 Olea europaea
Oeu024663.1 Olea europaea
Oeu042972.1 Olea europaea
Os03g0208900 Oryza sativa ssp. japonica
Os12g0109000 Oryza sativa ssp. japonica
Peaxi162Scf00017g02623 Petunia axillaris
Peaxi162Scf00700g00731 Petunia axillaris
PGR083G1509 Punica granatum
PGR142G4462 Punica granatum
PGSC0003DMG402024581 Solanum tuberosum
Phvul.004G022400 Phaseolus vulgaris
Phvul.009G182400 Phaseolus vulgaris
Potri.012G075500 Populus trichocarpa
Potri.015G070500 Populus trichocarpa
Pp3c20_18250 Physcomitrium patens
Pp3c24_4010 Physcomitrium patens
Pp3c8_6490 Physcomitrium patens
Pp3c8_6500 Physcomitrium patens
Prupe.3G276900 Prunus persica
Prupe.5G179900 Prunus persica
Psat1g078720 Pisum sativum
Psat5g113640 Pisum sativum
PSO013G0075 Papaver somniferum
PSO161G0118 Papaver somniferum
PSO832G4137 Papaver somniferum
QL02p078587 Quercus lobata
QL10p012280 Quercus lobata
RcHm_v2.0_Chr2g0170091 Rosa chinensis
RcHm_v2.0_Chr5g0039351 Rosa chinensis
RcHm_v2.0_Chr7g0179791 Rosa chinensis
Rhsim12G0161200 Rhododendron simsii
Sabra12G0053700 Salix brachista
Sabra15G0094800 Salix brachista
SalBow1G7887 Salvia bowleyana
SalBow3G3424 Salvia bowleyana
SalBow5G1456 Salvia bowleyana
Sc11g0007980 Simmondsia chinensis
Sc12g0005640 Simmondsia chinensis
Sed0012803 Sechium edule
Sed0016903 Sechium edule
Sed0024646 Sechium edule
SEGI_12365 Sequoiadendron giganteum
SEGI_13288 Sequoiadendron giganteum
SEGI_38839 Sequoiadendron giganteum
SGA_v2.0_scaffold135G34828 Striga asiatica
SGA_v2.0_scaffold25G10869 Striga asiatica
SGA_v2.0_scaffold7G04109 Striga asiatica
SHI35812 Sapria himalayana
SHI35815 Sapria himalayana
SHI37537 Sapria himalayana
SMO174G0228 Selaginella moellendorffii
Solyc03g113790.4 Solanum lycopersicum
Sopen03g032840 Solanum pennellii
Sp5g30050 Schrenkiella parvula
Sp7g01970 Schrenkiella parvula
TAR371G0826 Trochodendron aralioides
TAR374G1622 Trochodendron aralioides
TAR629G1365 Trochodendron aralioides
THA.LOC104805421 Tarenaya hassleriana
Thecc.03G003500 Theobroma cacao
Thecc.04G066800 Theobroma cacao
Thhalv10018622m.g Eutrema salsugineum
Thhalv10027808m.g Eutrema salsugineum
TPR.G32572 Trifolium pratense
TPR.G6834 Trifolium pratense
TWI36G1619 Tripterygium wilfordii
TWI56G1065 Tripterygium wilfordii
TWI60G1185 Tripterygium wilfordii
unitig_62.g23570 Utricularia gibba
unitig_62.g23571 Utricularia gibba
vmacro05786 Vaccinium macrocarpon
vmacro16585 Vaccinium macrocarpon
VMungo0464G1000 Vigna mungo
VMungo1309G1880 Vigna mungo
Zm00001eb007180 Zea mays
Zm00001eb400530 Zea mays

User provided reference genes

Program Settings