Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p40540 Brassica napus
A07p40500 Brassica napus
A08p30060 Brassica napus
Aa31LG2G4640 Aethionema arabicum
Aa31LG4G5070 Aethionema arabicum
Aa31LG7G3790 Aethionema arabicum
Actinidia19069 Actinidia chinensis
Actinidia34968 Actinidia chinensis
Actinidia37686 Actinidia chinensis
Ah.02g112860 Amaranthus hybridus
Ah.10g031060 Amaranthus hybridus
AL1G31570 Arabidopsis lyrata
AL2G34740 Arabidopsis lyrata
AL5G18040 Arabidopsis lyrata
Aqoxy3G00855 Aquilegia oxysepala
Aqoxy3G00856 Aquilegia oxysepala
Aqoxy3G03169 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AP0627 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KN857F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N6T05M Arachis hypogaea
AT1G19010 Arabidopsis thaliana
AT1G74860 Arabidopsis thaliana
ATR0624G126 Amborella trichopoda
Atru.chr8.2472 Acer truncatum
Atru.chr9.2380 Acer truncatum
AUR62008304 Chenopodium quinoa
AUR62018328 Chenopodium quinoa
AUR62021791 Chenopodium quinoa
AUR62021794 Chenopodium quinoa
AUR62030558 Chenopodium quinoa
BcaB03g12942 Brassica carinata
BcaC06g30916 Brassica carinata
BcaC06g33739 Brassica carinata
BcaC07g38971 Brassica carinata
BcaC07g38972 Brassica carinata
BcaC08g46910 Brassica carinata
BcaC08g46911 Brassica carinata
BolC6t39924H Brassica oleracea
BolC7t44261H Brassica oleracea
BolC8t49534H Brassica oleracea
BolC8t49536H Brassica oleracea
BraA06t26973Z Brassica rapa
BraA07t31593Z Brassica rapa
BraA07t31594Z Brassica rapa
BraA08t34941Z Brassica rapa
C06p48880 Brassica napus
C07p37480 Brassica napus
C08p19100 Brassica napus
C08p19130 Brassica napus
CAN.G206.84 Capsicum annuum
CAN.G366.4 Capsicum annuum
CAN.G853.36 Capsicum annuum
CAN.G853.37 Capsicum annuum
CANSAT80G1418 Cannabis sativa
CARHR019630 Cardamine hirsuta
CARHR068180 Cardamine hirsuta
CARHR292550 Cardamine hirsuta
Carub.0001s1864 Capsella rubella
Carub.0002s2164 Capsella rubella
Carub.0005s0693 Capsella rubella
Ca_21874_v3 Cicer arietinum L.
Cc04_g16140 Coffea canephora
Cc07_g02820 Coffea canephora
CDE02G3017 Ceratophyllum demersum
CDE06G2464 Ceratophyllum demersum
Ciclev10011309m.g Citrus clementina
Ciclev10019847m.g Citrus clementina
CiPaw.03G032500 Carya illinoinensis
CiPaw.04G021400 Carya illinoinensis
CiPaw.11G034000 Carya illinoinensis
ClCG01G014180 Citrullus lanatus
ClCG09G018540 Citrullus lanatus
COL.COLO4_22897 Corchorus olitorius
Cpa.g.sc14.65 Carica papaya
Cpa.g.sc35.14 Carica papaya
CsaV3_1G008130 Cucumis sativus L.
CsaV3_5G037690 Cucumis sativus L.
CSS0009845 Camellia sinensis var. sinensis
CSS0010077 Camellia sinensis var. sinensis
CSS0022026 Camellia sinensis var. sinensis
CSS0033434 Camellia sinensis var. sinensis
CSS0046242 Camellia sinensis var. sinensis
CSS0049766 Camellia sinensis var. sinensis
DCAR_011177 Daucus carota
DCAR_016514 Daucus carota
DCAR_021554 Daucus carota
DCAR_021558 Daucus carota
Dinv02653 Davidia involucrata
Dinv13122 Davidia involucrata
Dinv33687 Davidia involucrata
Duzib068G0784 Durio zibethinus
Duzib147G1604 Durio zibethinus
Duzib187G1647 Durio zibethinus
Duzib205G0221 Durio zibethinus
ECA232G1784 Erigeron canadensis
ECA232G3085 Erigeron canadensis
ECA234G1958 Erigeron canadensis
ECA248G2872 Erigeron canadensis
EL10Ac2g02900 Beta vulgaris
EL10Ac5g10867 Beta vulgaris
Eucgr.J02157 Eucalyptus grandis
Eucgr.K02895 Eucalyptus grandis
FAN04G2684 Fragaria x ananassa
FAN05G1906 Fragaria x ananassa
FAN08G1526 Fragaria x ananassa
FAN09G0791 Fragaria x ananassa
FAN13G1829 Fragaria x ananassa
FAN14G0027 Fragaria x ananassa
FAN17G2864 Fragaria x ananassa
FAN18G0871 Fragaria x ananassa
FvH4_5g16190 Fragaria vesca
FvH4_6g49700 Fragaria vesca
Glyma.05G032400 Glycine max
Glyma.13G067300 Glycine max
Glyma.17G094200 Glycine max
Glyma.18G155150 Glycine max
Glyma.19G017100 Glycine max
Gohir.A03G076100 Gossypium hirsutum
Gohir.A09G023200 Gossypium hirsutum
Gohir.A11G028200 Gossypium hirsutum
Gohir.D03G051100 Gossypium hirsutum
Gohir.D03G089600 Gossypium hirsutum
Gohir.D06G094900 Gossypium hirsutum
Gohir.D08G168100 Gossypium hirsutum
Gohir.D09G022500 Gossypium hirsutum
Gohir.D11G031000 Gossypium hirsutum
Gohir.D13G103700 Gossypium hirsutum
Gorai.003G052800 Gossypium raimondii
Gorai.003G071800 Gossypium raimondii
Gorai.004G175300 Gossypium raimondii
Gorai.006G026500 Gossypium raimondii
Gorai.007G033900 Gossypium raimondii
GSVIVG01007845001 Vitis vinifera
GSVIVG01032571001 Vitis vinifera
HanXRQChr02g0044071 Helianthus annuus
HanXRQChr02g0044081 Helianthus annuus
HanXRQChr02g0045311 Helianthus annuus
HanXRQChr07g0198571 Helianthus annuus
HanXRQChr08g0235641 Helianthus annuus
HanXRQChr09g0271551 Helianthus annuus
HanXRQChr10g0317171 Helianthus annuus
HanXRQChr14g0449441 Helianthus annuus
HanXRQChr16g0503461 Helianthus annuus
Haze_07418 Corylus avellana
Hma1.2p1_0002F.1_g002970 Hydrangea macrophylla
HPP92_017082 Vanilla planifolia
Hund02700 Selenicereus undatus
Hund13293 Selenicereus undatus
Lalb_Chr12g0201291 Lupinus albus
Lalb_Chr13g0298031 Lupinus albus
Lj2g0010034 Lotus japonicus
Lj2g0016402 Lotus japonicus
Lj4g0005532 Lotus japonicus
Lj5A119G36 Lonicera japonica
Lj7A404G41 Lonicera japonica
Lj9C455G16 Lonicera japonica
Lsat_1_v5_gn_2_37820 Lactuca sativa
Lsat_1_v5_gn_2_90560 Lactuca sativa
Lsat_1_v5_gn_4_74501 Lactuca sativa
Manes.06G099300 Manihot esculenta
Manes.15G177600 Manihot esculenta
MBI09_g10470_MAGBIO Magnolia biondii
MBI09_g46788_MAGBIO Magnolia biondii
MD06G1183100 Malus domestica
MD09G1042200 Malus domestica
MD14G1189100 Malus domestica
MD17G1043600 Malus domestica
Medtr4g107200 Medicago truncatula
MELO3C002230.2 Cucumis melo
MELO3C021486.2 Cucumis melo
Migut.D01893 Erythranthe guttata
Migut.H00873 Erythranthe guttata
Migut.I00077 Erythranthe guttata
MSTRG.23077 Avicennia marina
Nitab4.5_0000003g0330 Nicotiana tabacum
Nitab4.5_0000003g0380 Nicotiana tabacum
Nitab4.5_0000642g0200 Nicotiana tabacum
Nitab4.5_0000758g0120 Nicotiana tabacum
Nitab4.5_0001239g0090 Nicotiana tabacum
Nitab4.5_0002265g0070 Nicotiana tabacum
Nitab4.5_0002875g0040 Nicotiana tabacum
Nn3g17059 Nelumbo nucifera
Nn4g22965 Nelumbo nucifera
Oeu005681.1 Olea europaea
Oeu018663.2 Olea europaea
Oeu038970.1 Olea europaea
Os02g0580700 Oryza sativa ssp. japonica
Peaxi162Scf00017g02214 Petunia axillaris
Peaxi162Scf00129g00637 Petunia axillaris
Peaxi162Scf00689g00423 Petunia axillaris
PGR044G1100 Punica granatum
PGR083G1411 Punica granatum
PGR083G1932 Punica granatum
PGSC0003DMG400001402 Solanum tuberosum
PGSC0003DMG400024465 Solanum tuberosum
Phvul.001G119200 Phaseolus vulgaris
Phvul.003G195900 Phaseolus vulgaris
Phvul.004G023400 Phaseolus vulgaris
Potri.001G350000 Populus trichocarpa
Potri.017G074300 Populus trichocarpa
Prupe.3G275400 Prunus persica
Prupe.3G275500 Prunus persica
Prupe.5G181500 Prunus persica
Prupe.5G181800 Prunus persica
Psat7g131040 Pisum sativum
PSO161G0001 Papaver somniferum
PSO478G0854 Papaver somniferum
PSO591G0190 Papaver somniferum
PSO832G0166 Papaver somniferum
QL02p079317 Quercus lobata
QL10p013948 Quercus lobata
RcHm_v2.0_Chr2g0169731 Rosa chinensis
RcHm_v2.0_Chr7g0179941 Rosa chinensis
Rhsim08G0164100 Rhododendron simsii
Rhsim12G0160600 Rhododendron simsii
Sabra16G0229400 Salix brachista
SalBow1G1965 Salvia bowleyana
Sc04g0002230 Simmondsia chinensis
Sc11g0006860 Simmondsia chinensis
Sed0003853 Sechium edule
Sed0010058 Sechium edule
Sed0022597 Sechium edule
SEGI_05106 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31862 Striga asiatica
SGA_v2.0_scaffold135G34799 Striga asiatica
SGA_v2.0_scaffold25G10857 Striga asiatica
SGA_v2.0_scaffold56G20087 Striga asiatica
Solyc02g087450.3 Solanum lycopersicum
Solyc03g113660.4 Solanum lycopersicum
Solyc06g071250.4 Solanum lycopersicum
Solyc07g062420.1 Solanum lycopersicum
Sopen02g032200 Solanum pennellii
Sopen03g032720 Solanum pennellii
Sopen06g027560 Solanum pennellii
Sp1g16970 Schrenkiella parvula
Sp2g17200 Schrenkiella parvula
Sp5g29990 Schrenkiella parvula
TAR371G0654 Trochodendron aralioides
TAR374G0258 Trochodendron aralioides
TAR629G2000 Trochodendron aralioides
THA.LOC104805426 Tarenaya hassleriana
THA.LOC104809226 Tarenaya hassleriana
THA.LOC104822818 Tarenaya hassleriana
Thecc.03G001600 Theobroma cacao
Thecc.04G069700 Theobroma cacao
Thhalv10005462m.g Eutrema salsugineum
Thhalv10008269m.g Eutrema salsugineum
Thhalv10019702m.g Eutrema salsugineum
TPR.G38438 Trifolium pratense
TWI12G1193 Tripterygium wilfordii
TWI56G0261 Tripterygium wilfordii
TWI56G0357 Tripterygium wilfordii
unitig_21.g20455 Utricularia gibba
unitig_744.g24394 Utricularia gibba
vmacro16579 Vaccinium macrocarpon
vmacro19345 Vaccinium macrocarpon
VMungo0464G2062 Vigna mungo
VMungo1215G0528 Vigna mungo
Zm00001eb183280 Zea mays
Zm00001eb245240 Zea mays

User provided reference genes

Program Settings