Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14690 Brassica napus
A03p54330 Brassica napus
A04p14520 Brassica napus
A09p13950 Brassica napus
Aa31LG2G1000 Aethionema arabicum
Aa31LG6G6660 Aethionema arabicum
Aa31LG9G560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.358 Anthoceros agrestis
Actinidia10045 Actinidia chinensis
Actinidia20886 Actinidia chinensis
Ah.12g051770 Amaranthus hybridus
AL2G11310 Arabidopsis lyrata
AL7G29990 Arabidopsis lyrata
AL7G48030 Arabidopsis lyrata
Aqoxy7G00255 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.F051D6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QMK3CD Arachis hypogaea
AT1G63830 Arabidopsis thaliana
AT4G23470 Arabidopsis thaliana
AT5G41390 Arabidopsis thaliana
ATR0661G245 Amborella trichopoda
Atru.chr9.2151 Acer truncatum
AUR62004388 Chenopodium quinoa
AUR62010716 Chenopodium quinoa
AUR62022595 Chenopodium quinoa
AUR62027262 Chenopodium quinoa
BcaB02g07894 Brassica carinata
BcaB06g27618 Brassica carinata
BcaB07g31545 Brassica carinata
BcaC02g08960 Brassica carinata
BcaC04g22680 Brassica carinata
BcaC09g50994 Brassica carinata
BcaNung01046 Brassica carinata
BcaNung01048 Brassica carinata
BcaNung04481 Brassica carinata
BolC1t01746H Brassica oleracea
BolC6t37171H Brassica oleracea
BolC7t45773H Brassica oleracea
BolC9t54575H Brassica oleracea
BraA01t01409Z Brassica rapa
BraA03t14495Z Brassica rapa
BraA04t17097Z Brassica rapa
BraA09t37041Z Brassica rapa
C01p18200 Brassica napus
C04p48440 Brassica napus
C06p19810 Brassica napus
C07p52730 Brassica napus
C09p16740 Brassica napus
CAN.G1265.1 Capsicum annuum
CAN.G532.11 Capsicum annuum
CAN.G78.101 Capsicum annuum
CARHR047340 Cardamine hirsuta
CARHR047370 Cardamine hirsuta
CARHR212940 Cardamine hirsuta
CARHR230800 Cardamine hirsuta
Carub.0002s0102 Capsella rubella
Carub.0007s1766 Capsella rubella
Carub.0007s3409 Capsella rubella
Ca_10938_v3 Cicer arietinum L.
CBR_g601 Chara braunii
Cc02_g38330 Coffea canephora
Cc08_g15030 Coffea canephora
CDE09G1435 Ceratophyllum demersum
Ciclev10021784m.g Citrus clementina
CiPaw.02G033300 Carya illinoinensis
CiPaw.11G132400 Carya illinoinensis
CiPaw.12G090800 Carya illinoinensis
ClCG06G003520 Citrullus lanatus
ClCG07G008270 Citrullus lanatus
COL.COLO4_12740 Corchorus olitorius
COL.COLO4_34500 Corchorus olitorius
Cpa.g.sc180.15 Carica papaya
Cre17.g727400 Chlamydomonas reinhardtii
CsaV3_4G005830 Cucumis sativus L.
CsaV3_6G000790 Cucumis sativus L.
CSS0003657 Camellia sinensis var. sinensis
CSS0008846 Camellia sinensis var. sinensis
CSS0023146 Camellia sinensis var. sinensis
CSS0039015 Camellia sinensis var. sinensis
CSS0048071 Camellia sinensis var. sinensis
DCAR_004620 Daucus carota
DCAR_005567 Daucus carota
DCAR_008364 Daucus carota
Dinv37617 Davidia involucrata
Dinv38919 Davidia involucrata
Duzib068G1381 Durio zibethinus
Duzib084G1145 Durio zibethinus
Duzib133G1440 Durio zibethinus
Duzib205G1176 Durio zibethinus
ECA233G6057 Erigeron canadensis
ECA240G4481 Erigeron canadensis
ECA246G2689 Erigeron canadensis
EL10Ac1g00382 Beta vulgaris
EL10Ac5g12805 Beta vulgaris
Eucgr.D01828 Eucalyptus grandis
Eucgr.D02309 Eucalyptus grandis
Eucgr.E00640 Eucalyptus grandis
FAN03G0271 Fragaria x ananassa
FAN04G2723 Fragaria x ananassa
FAN06G1101 Fragaria x ananassa
FAN06G2761 Fragaria x ananassa
FAN06G5085 Fragaria x ananassa
FAN08G1618 Fragaria x ananassa
FAN09G3229 Fragaria x ananassa
FAN10G0842 Fragaria x ananassa
FAN10G3497 Fragaria x ananassa
FAN13G0497 Fragaria x ananassa
FAN18G0576 Fragaria x ananassa
FvH4_5g02860 Fragaria vesca
FvH4_7g14890 Fragaria vesca
Glyma.01G221200 Glycine max
Glyma.05G209900 Glycine max
Glyma.08G016600 Glycine max
Glyma.11G022500 Glycine max
Gohir.A03G019800 Gossypium hirsutum
Gohir.A07G141400 Gossypium hirsutum
Gohir.A08G115700 Gossypium hirsutum
Gohir.A12G231100 Gossypium hirsutum
Gohir.D03G149400 Gossypium hirsutum
Gohir.D07G147000 Gossypium hirsutum
Gohir.D08G136500 Gossypium hirsutum
Gohir.D12G232200 Gossypium hirsutum
Gorai.001G159500 Gossypium raimondii
Gorai.003G156800 Gossypium raimondii
Gorai.004G139700 Gossypium raimondii
Gorai.008G248500 Gossypium raimondii
GSVIVG01019394001 Vitis vinifera
GSVIVG01026997001 Vitis vinifera
HanXRQChr03g0085931 Helianthus annuus
HanXRQChr06g0165961 Helianthus annuus
HanXRQChr13g0393771 Helianthus annuus
HanXRQChr17g0533441 Helianthus annuus
Haze_08816 Corylus avellana
Haze_15538 Corylus avellana
Hma1.2p1_1123F.1_g259390 Hydrangea macrophylla
HPP92_007336 Vanilla planifolia
HPP92_012742 Vanilla planifolia
HPP92_012743 Vanilla planifolia
HPP92_022213 Vanilla planifolia
HPP92_022225 Vanilla planifolia
Hund11450 Selenicereus undatus
Lalb_Chr05g0211771 Lupinus albus
Lalb_Chr05g0224611 Lupinus albus
Lj2A181G46 Lonicera japonica
Lj4g0007440 Lotus japonicus
Lj8A217T75 Lonicera japonica
Lsat_1_v5_gn_3_6081 Lactuca sativa
Lsat_1_v5_gn_6_5060 Lactuca sativa
Lsat_1_v5_gn_6_85341 Lactuca sativa
Manes.01G059200 Manihot esculenta
Manes.01G254600 Manihot esculenta
Manes.02G019200 Manihot esculenta
Manes.05G031800 Manihot esculenta
Mapoly0007s0170 Marchantia polymorpha
Mapoly0078s0034 Marchantia polymorpha
MBI04_g35058_MAGBIO Magnolia biondii
MBI11_g32499_MAGBIO Magnolia biondii
MCO05G018 Micromonas commoda
MD01G1067500 Malus domestica
MD06G1088200 Malus domestica
MD07G1133200 Malus domestica
MD07G1133400 Malus domestica
MD14G1109300 Malus domestica
Medtr8g098735 Medicago truncatula
MELO3C016368.2 Cucumis melo
MELO3C021191.2 Cucumis melo
Migut.A00748 Erythranthe guttata
MSTRG.11968 Avicennia marina
MSTRG.25624 Avicennia marina
Nitab4.5_0000200g0220 Nicotiana tabacum
Nitab4.5_0001522g0020 Nicotiana tabacum
Nitab4.5_0002282g0010 Nicotiana tabacum
Nitab4.5_0003043g0020 Nicotiana tabacum
Nitab4.5_0006942g0030 Nicotiana tabacum
Nitab4.5_0007313g0020 Nicotiana tabacum
Nitab4.5_0009853g0040 Nicotiana tabacum
Nitab4.5_0014843g0030 Nicotiana tabacum
Nn6g33332 Nelumbo nucifera
Oeu000833.2 Olea europaea
Oeu021742.2 Olea europaea
Oeu039183.1 Olea europaea
Os03g0123600 Oryza sativa ssp. japonica
Os10g0535800 Oryza sativa ssp. japonica
Peaxi162Scf00020g01026 Petunia axillaris
Peaxi162Scf00074g02031 Petunia axillaris
Peaxi162Scf00117g01731 Petunia axillaris
Peaxi162Scf00585g00010 Petunia axillaris
PGR031G0747 Punica granatum
PGR031G2871 Punica granatum
PGSC0003DMG400000053 Solanum tuberosum
PGSC0003DMG400004981 Solanum tuberosum
PGSC0003DMG400012331 Solanum tuberosum
PGSC0003DMG400019413 Solanum tuberosum
Phvul.002G158600 Phaseolus vulgaris
Phvul.002G158700 Phaseolus vulgaris
Phvul.002G291700 Phaseolus vulgaris
Potri.001G101100 Populus trichocarpa
Potri.002G161801 Populus trichocarpa
Potri.003G130700 Populus trichocarpa
Potri.014G087600 Populus trichocarpa
Pp3c1_36330 Physcomitrium patens
PRCOL_00000950 Prasinoderma coloniale
PRCOL_00005373 Prasinoderma coloniale
Prupe.2G173900 Prunus persica
Prupe.2G174000 Prunus persica
Prupe.5G104200 Prunus persica
Psat1g132600 Pisum sativum
PSO478G3713 Papaver somniferum
PSO782G5556 Papaver somniferum
QL04p054192 Quercus lobata
QL12p032345 Quercus lobata
RcHm_v2.0_Chr1g0356831 Rosa chinensis
RcHm_v2.0_Chr1g0356841 Rosa chinensis
RcHm_v2.0_Chr7g0197021 Rosa chinensis
RcHm_v2.0_Chr7g0197041 Rosa chinensis
Rhsim02G0234200 Rhododendron simsii
Rhsim07G0012900 Rhododendron simsii
Sabra01G0076100 Salix brachista
Sabra02G0128800 Salix brachista
Sabra03G0092900 Salix brachista
Sc01g0003580 Simmondsia chinensis
Sc22g0005430 Simmondsia chinensis
Sed0014104 Sechium edule
Sed0016448 Sechium edule
Sed0016833 Sechium edule
SEGI_02364 Sequoiadendron giganteum
SGA_v2.0_scaffold173G39160 Striga asiatica
SGA_v2.0_scaffold96G28923 Striga asiatica
SHI07110 Sapria himalayana
SMO364G0879 Selaginella moellendorffii
Solyc01g094870.3 Solanum lycopersicum
Solyc08g081360.3 Solanum lycopersicum
Solyc10g012080.4 Solanum lycopersicum
Solyc12g056210.3 Solanum lycopersicum
Sopen01g038650 Solanum pennellii
Sopen08g029680 Solanum pennellii
Sopen10g005820 Solanum pennellii
Sopen12g028720 Solanum pennellii
Sp2g00860 Schrenkiella parvula
Sp7g00560 Schrenkiella parvula
Sp7g21370 Schrenkiella parvula
TAR335G0003 Trochodendron aralioides
TAR629G0130 Trochodendron aralioides
THA.LOC104806418 Tarenaya hassleriana
THA.LOC104809374 Tarenaya hassleriana
Thecc.01G356000 Theobroma cacao
Thecc.03G283000 Theobroma cacao
Thhalv10023674m.g Eutrema salsugineum
Thhalv10026035m.g Eutrema salsugineum
Thhalv10028166m.g Eutrema salsugineum
TPR.G12898 Trifolium pratense
TWI60G0865 Tripterygium wilfordii
TWI81G0702 Tripterygium wilfordii
unitig_88.g27621 Utricularia gibba
vmacro11391 Vaccinium macrocarpon
vmacro13258 Vaccinium macrocarpon
vmacro23483 Vaccinium macrocarpon
VMungo0251G0855 Vigna mungo
VMungo1215G0754 Vigna mungo
Zm00001eb393630 Zea mays
Zm00001eb403710 Zea mays

User provided reference genes

Program Settings