Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06890 Brassica napus
A07p19190 Brassica napus
A10p16980 Brassica napus
Aa31LG5G7520 Aethionema arabicum
Aa31sc23G210 Aethionema arabicum
Actinidia03780 Actinidia chinensis
Actinidia07071 Actinidia chinensis
Actinidia37246 Actinidia chinensis
Ah.08g214850 Amaranthus hybridus
AL4G23230 Arabidopsis lyrata
AL8G36280 Arabidopsis lyrata
Aqoxy4G03023 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.13MW22 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6E5JYA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J9PDVA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TMHH4X Arachis hypogaea
AT2G28690 Arabidopsis thaliana
AT5G59760 Arabidopsis thaliana
ATR0033G031 Amborella trichopoda
Atru.chr3.3814 Acer truncatum
AUR62001841 Chenopodium quinoa
AUR62001842 Chenopodium quinoa
AUR62009629 Chenopodium quinoa
AUR62009630 Chenopodium quinoa
BcaB01g03117 Brassica carinata
BcaB02g10192 Brassica carinata
BcaB05g22574 Brassica carinata
BcaB08g36223 Brassica carinata
BcaC02g10992 Brassica carinata
BcaC04g19626 Brassica carinata
BcaNung06778 Brassica carinata
BolC2t07321H Brassica oleracea
BolC4t23756H Brassica oleracea
BraA02t05769Z Brassica rapa
BraA07t29626Z Brassica rapa
BraA10t43782Z Brassica rapa
C02p12190 Brassica napus
C04p22400 Brassica napus
C09p52230 Brassica napus
CAN.G241.40 Capsicum annuum
CAN.G820.11 Capsicum annuum
CANSAT01G1623 Cannabis sativa
CANSAT01G2680 Cannabis sativa
CANSAT54G2555 Cannabis sativa
CANSAT80G1891 Cannabis sativa
CARHR121800 Cardamine hirsuta
CARHR273340 Cardamine hirsuta
Carub.0004s0969 Capsella rubella
Carub.0008s2042 Capsella rubella
Ca_01347_v3 Cicer arietinum L.
Ca_19195_v3 Cicer arietinum L.
Ca_27691_v3 Cicer arietinum L.
Cc01_g04170 Coffea canephora
Cc01_g12250 Coffea canephora
CDE02G0555 Ceratophyllum demersum
CDE09G0663 Ceratophyllum demersum
Cfa011444 Carpinus fangiana
Ciclev10029033m.g Citrus clementina
CiPaw.13G099700 Carya illinoinensis
CiPaw.14G072600 Carya illinoinensis
ClCG02G020460 Citrullus lanatus
ClCG03G001850 Citrullus lanatus
COL.COLO4_14874 Corchorus olitorius
COL.COLO4_18442 Corchorus olitorius
COL.COLO4_20722 Corchorus olitorius
Cpa.g.sc252.23 Carica papaya
CsaV3_1G033710 Cucumis sativus L.
CsaV3_6G022160 Cucumis sativus L.
CSS0014179 Camellia sinensis var. sinensis
CSS0017604 Camellia sinensis var. sinensis
CSS0026990 Camellia sinensis var. sinensis
CSS0041199 Camellia sinensis var. sinensis
DCAR_005304 Daucus carota
DCAR_006005 Daucus carota
DCAR_015599 Daucus carota
DCAR_015612 Daucus carota
Dinv26273 Davidia involucrata
Dinv32845 Davidia involucrata
Duzib150G0531 Durio zibethinus
Duzib168G0755 Durio zibethinus
Duzib170G0200 Durio zibethinus
ECA247G1124 Erigeron canadensis
ECA248G0080 Erigeron canadensis
EL10Ac7g15959 Beta vulgaris
Eucgr.B00641 Eucalyptus grandis
Eucgr.B02404 Eucalyptus grandis
Eucgr.J02075 Eucalyptus grandis
FAN01G2443 Fragaria x ananassa
FAN02G3020 Fragaria x ananassa
FAN03G1777 Fragaria x ananassa
FAN05G1565 Fragaria x ananassa
FAN06G0142 Fragaria x ananassa
FAN06G4008 Fragaria x ananassa
FAN10G0678 Fragaria x ananassa
FAN10G0879 Fragaria x ananassa
FAN11G0006 Fragaria x ananassa
FAN14G3506 Fragaria x ananassa
FAN15G2760 Fragaria x ananassa
FAN16G1521 Fragaria x ananassa
FAN20G0921 Fragaria x ananassa
FAN21G0578 Fragaria x ananassa
FAN25G3511 Fragaria x ananassa
FAN27G0692 Fragaria x ananassa
FvH4_3g34910 Fragaria vesca
FvH4_6g14520 Fragaria vesca
Glyma.03G173500 Glycine max
Glyma.11G143300 Glycine max
Glyma.12G066500 Glycine max
Glyma.13G332900 Glycine max
Glyma.15G041400 Glycine max
Glyma.19G174400 Glycine max
Gohir.A01G219450 Gossypium hirsutum
Gohir.A03G038401 Gossypium hirsutum
Gohir.A07G095600 Gossypium hirsutum
Gohir.A13G229100 Gossypium hirsutum
Gohir.D01G208532 Gossypium hirsutum
Gohir.D03G130000 Gossypium hirsutum
Gohir.D07G099900 Gossypium hirsutum
Gohir.D13G234700 Gossypium hirsutum
Gorai.001G107800 Gossypium raimondii
Gorai.002G253700 Gossypium raimondii
Gorai.003G136700 Gossypium raimondii
Gorai.013G265500 Gossypium raimondii
GSVIVG01025039001 Vitis vinifera
HanXRQChr01g0009911 Helianthus annuus
HanXRQChr08g0228281 Helianthus annuus
HanXRQChr11g0340291 Helianthus annuus
Haze_24026 Corylus avellana
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla
Hma1.2p1_0111F.1_g053170 Hydrangea macrophylla
Hma1.2p1_0846F.1_g227640 Hydrangea macrophylla
Hma1.2p1_2800F.1_g328740 Hydrangea macrophylla
HPP92_000709 Vanilla planifolia
HPP92_000712 Vanilla planifolia
HPP92_012471 Vanilla planifolia
HPP92_012580 Vanilla planifolia
Hund05001 Selenicereus undatus
Hund18942 Selenicereus undatus
Lalb_Chr01g0003831 Lupinus albus
Lalb_Chr03g0026881 Lupinus albus
Lalb_Chr24g0394271 Lupinus albus
Lalb_Chr25g0289461 Lupinus albus
Lj1A161T60 Lonicera japonica
Lj1g0014565 Lotus japonicus
Lj2P1052T44 Lonicera japonica
Lj3g0007491 Lotus japonicus
Lj3g0023082 Lotus japonicus
Lsat_1_v5_gn_5_166460 Lactuca sativa
Manes.04G030300 Manihot esculenta
Manes.11G134700 Manihot esculenta
MBI05_g38495_MAGBIO Magnolia biondii
MBI14_g29800_MAGBIO Magnolia biondii
MBI14_g44426_MAGBIO Magnolia biondii
MD03G1100400 Malus domestica
MD11G1114400 Malus domestica
MD12G1136600 Malus domestica
Medtr2g096360 Medicago truncatula
Medtr4g063070 Medicago truncatula
Medtr7g100342 Medicago truncatula
MELO3C013675.2 Cucumis melo
MELO3C020695.2 Cucumis melo
Migut.D02134 Erythranthe guttata
Migut.N02660 Erythranthe guttata
MSTRG.12631 Avicennia marina
MSTRG.18597 Avicennia marina
MSTRG.19679 Avicennia marina
MSTRG.21180 Avicennia marina
Nitab4.5_0000070g0090 Nicotiana tabacum
Nitab4.5_0000610g0250 Nicotiana tabacum
Nitab4.5_0000610g0270 Nicotiana tabacum
Nitab4.5_0000610g0280 Nicotiana tabacum
Nitab4.5_0003179g0010 Nicotiana tabacum
Nitab4.5_0003179g0040 Nicotiana tabacum
Nitab4.5_0003179g0060 Nicotiana tabacum
Nitab4.5_0011620g0010 Nicotiana tabacum
Nn2g10492 Nelumbo nucifera
Nn2g15083 Nelumbo nucifera
Nn3g18312 Nelumbo nucifera
Oeu040288.1 Olea europaea
Oeu041011.1 Olea europaea
Oeu058525.1 Olea europaea
Oeu062318.1 Olea europaea
Os05g0115100 Oryza sativa ssp. japonica
Peaxi162Scf00356g00031 Petunia axillaris
Peaxi162Scf00406g00007 Petunia axillaris
Peaxi162Scf00406g00012 Petunia axillaris
PGR102G0064 Punica granatum
PGSC0003DMG400010881 Solanum tuberosum
PGSC0003DMG400015561 Solanum tuberosum
PGSC0003DMG400015562 Solanum tuberosum
Phvul.001G171000 Phaseolus vulgaris
Phvul.011G067500 Phaseolus vulgaris
Phvul.L002343 Phaseolus vulgaris
Potri.001G235200 Populus trichocarpa
Potri.006G256801 Populus trichocarpa
Potri.008G010100 Populus trichocarpa
Potri.009G027100 Populus trichocarpa
Potri.018G024900 Populus trichocarpa
Prupe.6G085300 Prunus persica
Psat7g219480 Pisum sativum
PSO206G0036 Papaver somniferum
PSO339G4672 Papaver somniferum
QL01p033488 Quercus lobata
QL07p046673 Quercus lobata
RcHm_v2.0_Chr1g0380111 Rosa chinensis
RcHm_v2.0_Chr3g0467601 Rosa chinensis
RcHm_v2.0_Chr5g0062781 Rosa chinensis
RcHm_v2.0_Chr6g0300901 Rosa chinensis
Rhsim01G0224500 Rhododendron simsii
Rhsim13G0087400 Rhododendron simsii
Sabra06G0200800 Salix brachista
Sabra06G0201000 Salix brachista
Sabra08G0006000 Salix brachista
Sabra09G0018200 Salix brachista
Sabra16G0141400 Salix brachista
Sabra18G0027500 Salix brachista
SalBow1G2722 Salvia bowleyana
SalBow2G0511 Salvia bowleyana
SalBow3G1374 Salvia bowleyana
Sc12g0001720 Simmondsia chinensis
Sc21g0005450 Simmondsia chinensis
Sed0011374 Sechium edule
Sed0021945 Sechium edule
Sed0024909 Sechium edule
SGA_v2.0_scaffold134G34714 Striga asiatica
SGA_v2.0_scaffold81G26088 Striga asiatica
SHI05972 Sapria himalayana
Solyc06g005300.4 Solanum lycopersicum
Solyc11g073180.2 Solanum lycopersicum
Sopen06g001280 Solanum pennellii
Sopen11g030810 Solanum pennellii
Sp4g11560 Schrenkiella parvula
Sp6g21430 Schrenkiella parvula
TAR369G0856 Trochodendron aralioides
TAR623G0548 Trochodendron aralioides
TAR633G1544 Trochodendron aralioides
THA.LOC104800642 Tarenaya hassleriana
THA.LOC104814869 Tarenaya hassleriana
THA.LOC104815768 Tarenaya hassleriana
THA.LOC104826341 Tarenaya hassleriana
Thecc.09G328300 Theobroma cacao
Thhalv10014545m.g Eutrema salsugineum
Thhalv10017181m.g Eutrema salsugineum
TPR.G1014 Trifolium pratense
TPR.G10899 Trifolium pratense
TPR.G21451 Trifolium pratense
TPR.G34317 Trifolium pratense
TWI31G0042 Tripterygium wilfordii
TWI59G0134 Tripterygium wilfordii
TWI75G1695 Tripterygium wilfordii
TWI79G1700 Tripterygium wilfordii
unitig_0.g1550 Utricularia gibba
vmacro03117 Vaccinium macrocarpon
VMungo0464G1495 Vigna mungo
VMungo1080G1135 Vigna mungo
VMungo1127G0824 Vigna mungo
VMungo1383G3532 Vigna mungo
Zm00001eb088820 Zea mays
Zm00001eb266340 Zea mays
Zm00001eb355620 Zea mays

User provided reference genes

Program Settings