Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p31980 Brassica napus
A05p02720 Brassica napus
A09p50840 Brassica napus
Aa31LG1G17230 Aethionema arabicum
Aa31LG1G24120 Aethionema arabicum
Aa31LG1G25000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5139 Anthoceros agrestis
Actinidia12238 Actinidia chinensis
Actinidia14360 Actinidia chinensis
Actinidia22037 Actinidia chinensis
Actinidia32394 Actinidia chinensis
Actinidia32395 Actinidia chinensis
Ah.03g146550 Amaranthus hybridus
AL3G51750 Arabidopsis lyrata
AL4G40440 Arabidopsis lyrata
AL5G39680 Arabidopsis lyrata
AL8G42130 Arabidopsis lyrata
Aqoxy2G00058 Aquilegia oxysepala
Aqoxy5G02092 Aquilegia oxysepala
Aqoxy5G02093 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.47DXFL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J786L6 Arachis hypogaea
AT2G18465 Arabidopsis thaliana
AT2G42065 Arabidopsis thaliana
AT2G42080 Arabidopsis thaliana
AT3G58020 Arabidopsis thaliana
ATR0807G015 Amborella trichopoda
ATR0820G143 Amborella trichopoda
Atru.chr4.545 Acer truncatum
Atru.chr8.1116 Acer truncatum
AUR62003628 Chenopodium quinoa
AUR62012027 Chenopodium quinoa
AUR62012028 Chenopodium quinoa
AUR62015364 Chenopodium quinoa
AUR62017938 Chenopodium quinoa
BcaB06g29224 Brassica carinata
BcaB06g29225 Brassica carinata
BcaB07g31668 Brassica carinata
BcaC02g07265 Brassica carinata
BcaC02g07266 Brassica carinata
BcaC02g12457 Brassica carinata
BcaC04g22905 Brassica carinata
BcaC07g40175 Brassica carinata
BcaNung04409 Brassica carinata
BolC4t21963H Brassica oleracea
BolC4t28448H Brassica oleracea
BolC8t50953H Brassica oleracea
BraA04t18656Z Brassica rapa
BraA05t19264Z Brassica rapa
BraA09t40530Z Brassica rapa
C04p03250 Brassica napus
C04p69490 Brassica napus
C08p33580 Brassica napus
CAN.G249.15 Capsicum annuum
CAN.G570.9 Capsicum annuum
CANSAT01G0950 Cannabis sativa
CANSAT64G1369 Cannabis sativa
CARHR109060 Cardamine hirsuta
CARHR137160 Cardamine hirsuta
CARHR168340 Cardamine hirsuta
Carub.0003s3261 Capsella rubella
Carub.0004s2441 Capsella rubella
Carub.0004s2442 Capsella rubella
Carub.0005s2487 Capsella rubella
Ca_12071_v3 Cicer arietinum L.
Ca_16913_v3 Cicer arietinum L.
Cc06_g15900 Coffea canephora
Cc06_g15910 Coffea canephora
Cc07_g17320 Coffea canephora
CDE05G2239 Ceratophyllum demersum
CDE06G1146 Ceratophyllum demersum
Cfa002873 Carpinus fangiana
Cfa020162 Carpinus fangiana
Ciclev10012465m.g Citrus clementina
Ciclev10026217m.g Citrus clementina
CiPaw.04G083700 Carya illinoinensis
CiPaw.10G026200 Carya illinoinensis
ClCG02G000710 Citrullus lanatus
ClCG10G017560 Citrullus lanatus
COL.COLO4_22413 Corchorus olitorius
Cpa.g.sc152.23 Carica papaya
Cpa.g.sc85.63 Carica papaya
CsaV3_2G018060 Cucumis sativus L.
CsaV3_3G038780 Cucumis sativus L.
CSS0019314 Camellia sinensis var. sinensis
CSS0021721 Camellia sinensis var. sinensis
DCAR_013544 Daucus carota
DCAR_014350 Daucus carota
Dinv09944 Davidia involucrata
Dinv09945 Davidia involucrata
Dinv15109 Davidia involucrata
Dinv24067 Davidia involucrata
Duzib106G0243 Durio zibethinus
Duzib128G1439 Durio zibethinus
Duzib187G0226 Durio zibethinus
EL10Ac3g06912 Beta vulgaris
EL10Ac6g15249 Beta vulgaris
Eucgr.I00248 Eucalyptus grandis
Eucgr.K01842 Eucalyptus grandis
FAN09G3207 Fragaria x ananassa
FAN14G2805 Fragaria x ananassa
FAN14G3252 Fragaria x ananassa
FAN19G0842 Fragaria x ananassa
FAN23G2963 Fragaria x ananassa
FAN26G0434 Fragaria x ananassa
FAN28G2197 Fragaria x ananassa
FvH4_1g23620 Fragaria vesca
FvH4_6g22210 Fragaria vesca
Glyma.02G172700 Glycine max
Glyma.03G144900 Glycine max
Glyma.04G216300 Glycine max
Glyma.09G111101 Glycine max
Glyma.09G116600 Glycine max
Glyma.09G116800 Glycine max
Glyma.19G148000 Glycine max
Gohir.A09G128100 Gossypium hirsutum
Gohir.A11G221275 Gossypium hirsutum
Gohir.A11G228400 Gossypium hirsutum
Gohir.A12G079800 Gossypium hirsutum
Gohir.A12G079900 Gossypium hirsutum
Gohir.D09G124100 Gossypium hirsutum
Gohir.D11G226380 Gossypium hirsutum
Gohir.D11G233100 Gossypium hirsutum
Gohir.D12G092200 Gossypium hirsutum
Gorai.002G150500 Gossypium raimondii
Gorai.002G151000 Gossypium raimondii
Gorai.006G142900 Gossypium raimondii
Gorai.008G099800 Gossypium raimondii
GSVIVG01026590001 Vitis vinifera
GSVIVG01033493001 Vitis vinifera
HanXRQChr01g0009751 Helianthus annuus
HanXRQChr08g0233601 Helianthus annuus
HanXRQChr09g0259761 Helianthus annuus
Haze_19994 Corylus avellana
Hma1.2p1_0070F.1_g037530 Hydrangea macrophylla
Hma1.2p1_0676F.1_g201950 Hydrangea macrophylla
HPP92_022664 Vanilla planifolia
Hund19204 Selenicereus undatus
Hund19610 Selenicereus undatus
Lalb_Chr18g0047881 Lupinus albus
Lalb_Chr23g0272501 Lupinus albus
Lj1g0016833 Lotus japonicus
Lj5g0018767 Lotus japonicus
Lsat_1_v5_gn_4_137640 Lactuca sativa
Lsat_1_v5_gn_5_163560 Lactuca sativa
Manes.09G035700 Manihot esculenta
Manes.12G148500 Manihot esculenta
MBI06_g15023_MAGBIO Magnolia biondii
MBI08_g14971_MAGBIO Magnolia biondii
MD01G1016700 Malus domestica
MD12G1056800 Malus domestica
MD14G1056500 Malus domestica
Medtr0015s0110 Medicago truncatula
Medtr3g095470 Medicago truncatula
MELO3C009622.2 Cucumis melo
MELO3C023267.2 Cucumis melo
Migut.H01111 Erythranthe guttata
Migut.H01125 Erythranthe guttata
Migut.J01833 Erythranthe guttata
Migut.J01834 Erythranthe guttata
MSTRG.19906 Avicennia marina
MSTRG.23420 Avicennia marina
Nitab4.5_0000146g0160 Nicotiana tabacum
Nitab4.5_0000324g0010 Nicotiana tabacum
Nitab4.5_0001582g0020 Nicotiana tabacum
Nitab4.5_0002488g0060 Nicotiana tabacum
Nitab4.5_0005034g0060 Nicotiana tabacum
Nitab4.5_0011433g0030 Nicotiana tabacum
Nn1g06087 Nelumbo nucifera
Nn2g15693 Nelumbo nucifera
Oeu028500.1 Olea europaea
Oeu033736.1 Olea europaea
Oeu034267.1 Olea europaea
Os04g0687300 Oryza sativa ssp. japonica
Os05g0106500 Oryza sativa ssp. japonica
Os07g0470800 Oryza sativa ssp. japonica
Peaxi162Scf00025g02430 Petunia axillaris
Peaxi162Scf00258g00631 Petunia axillaris
PGR119G2242 Punica granatum
PGR142G1191 Punica granatum
PGSC0003DMG400003989 Solanum tuberosum
PGSC0003DMG400019954 Solanum tuberosum
PGSC0003DMG400026271 Solanum tuberosum
PGSC0003DMG400037146 Solanum tuberosum
Phvul.001G142600 Phaseolus vulgaris
Phvul.007G260100 Phaseolus vulgaris
Phvul.009G147300 Phaseolus vulgaris
Potri.001G308900 Populus trichocarpa
Potri.016G045401 Populus trichocarpa
Potri.019G010000 Populus trichocarpa
Pp3c9_670 Physcomitrium patens
Prupe.6G131200 Prunus persica
Prupe.6G162400 Prunus persica
Prupe.7G077400 Prunus persica
Psat5g063880 Pisum sativum
Psat6g091240 Pisum sativum
PSO541G4834 Papaver somniferum
PSO675G0676 Papaver somniferum
PSO675G2711 Papaver somniferum
QL06p051793 Quercus lobata
QL07p023812 Quercus lobata
RcHm_v2.0_Chr2g0119201 Rosa chinensis
RcHm_v2.0_Chr3g0479541 Rosa chinensis
Rhsim03G0005800 Rhododendron simsii
Rhsim08G0003500 Rhododendron simsii
Sabra06G0147800 Salix brachista
Sabra06G0147900 Salix brachista
Sabra16G0049300 Salix brachista
Sabra16G0049400 Salix brachista
Sabra16G0194700 Salix brachista
Sabra19G0018900 Salix brachista
Sabra19G0019400 Salix brachista
Sabra19G0022700 Salix brachista
Sabra19G0023200 Salix brachista
SalBow6G0399 Salvia bowleyana
SalBow6G1620 Salvia bowleyana
SalBow8G3976 Salvia bowleyana
Sc07g0001640 Simmondsia chinensis
Sc13g0002290 Simmondsia chinensis
Sed0006567 Sechium edule
Sed0010869 Sechium edule
Sed0024742 Sechium edule
Sed0025054 Sechium edule
SEGI_04300 Sequoiadendron giganteum
SEGI_26858 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30491 Striga asiatica
SGA_v2.0_scaffold227G43224 Striga asiatica
SGA_v2.0_scaffold37G14819 Striga asiatica
SGA_v2.0_scaffold62G21399 Striga asiatica
SHI11523 Sapria himalayana
Solyc03g063350.3 Solanum lycopersicum
Solyc11g005400.2 Solanum lycopersicum
Sopen03g016040 Solanum pennellii
Sopen11g001410 Solanum pennellii
Sp3g31890 Schrenkiella parvula
Sp4g24290 Schrenkiella parvula
Sp4g24300 Schrenkiella parvula
Sp5g04700 Schrenkiella parvula
TAR381G1391 Trochodendron aralioides
TAR623G0372 Trochodendron aralioides
THA.LOC104802604 Tarenaya hassleriana
THA.LOC104807838 Tarenaya hassleriana
Thecc.01G120500 Theobroma cacao
Thecc.05G171700 Theobroma cacao
Thhalv10006160m.g Eutrema salsugineum
Thhalv10017091m.g Eutrema salsugineum
Thhalv10022818m.g Eutrema salsugineum
TPR.G18733 Trifolium pratense
TPR.G32347 Trifolium pratense
TWI74G1029 Tripterygium wilfordii
TWI79G0923 Tripterygium wilfordii
unitig_699.g19445 Utricularia gibba
unitig_748.g7677 Utricularia gibba
vmacro07906 Vaccinium macrocarpon
vmacro18657 Vaccinium macrocarpon
VMungo0647G0959 Vigna mungo
VMungo1309G0994 Vigna mungo
VMungo1309G1282 Vigna mungo
VMungo1383G3725 Vigna mungo
Zm00001eb076140 Zea mays
Zm00001eb267270 Zea mays
Zm00001eb320120 Zea mays

User provided reference genes

Program Settings