Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p26260 Brassica napus
A03p29350 Brassica napus
A03p54220 Brassica napus
A09p27650 Brassica napus
Aa31LG6G6570 Aethionema arabicum
Aa31LG9G10810 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.452 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.462 Anthoceros agrestis
Actinidia19767 Actinidia chinensis
Actinidia21508 Actinidia chinensis
Ah.04g154230 Amaranthus hybridus
Ah.04g154240 Amaranthus hybridus
Ah.13g074140 Amaranthus hybridus
Ah.13g074150 Amaranthus hybridus
AL6G45870 Arabidopsis lyrata
AL7G30130 Arabidopsis lyrata
Aqoxy7G00914 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6UH7HR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PFNK2V Arachis hypogaea
AT4G11420 Arabidopsis thaliana
ATR0057G045 Amborella trichopoda
Atru.chr2.118 Acer truncatum
AUR62000719 Chenopodium quinoa
AUR62005245 Chenopodium quinoa
AUR62026623 Chenopodium quinoa
AUR62034876 Chenopodium quinoa
AUR62034877 Chenopodium quinoa
BcaB01g01651 Brassica carinata
BcaB01g02695 Brassica carinata
BcaB01g02701 Brassica carinata
BcaB05g23828 Brassica carinata
BcaC01g04630 Brassica carinata
BcaC03g16352 Brassica carinata
BcaC04g21147 Brassica carinata
BcaNung01455 Brassica carinata
BcaNung03267 Brassica carinata
BolC2t10192H Brassica oleracea
BolC3t15861H Brassica oleracea
BolC7t45756H Brassica oleracea
BolC9t56346H Brassica oleracea
BraA02t07627Z Brassica rapa
BraA03t12132Z Brassica rapa
BraA03t14483Z Brassica rapa
BraA09t38334Z Brassica rapa
C02p41770 Brassica napus
C03p35460 Brassica napus
C07p52590 Brassica napus
C09p35000 Brassica napus
CAN.G1337.30 Capsicum annuum
CAN.G344.8 Capsicum annuum
CAN.G97.14 Capsicum annuum
CANSAT56G4271 Cannabis sativa
CARHR218980 Cardamine hirsuta
CARHR230680 Cardamine hirsuta
CARHR255150 Cardamine hirsuta
CARHR260040 Cardamine hirsuta
Carub.0006s3036 Capsella rubella
Carub.0007s1783 Capsella rubella
Ca_08783_v3 Cicer arietinum L.
Ca_08785_v3 Cicer arietinum L.
CBR_g29275 Chara braunii
Cc06_g02900 Coffea canephora
CDE06G2290 Ceratophyllum demersum
CDE07G0225 Ceratophyllum demersum
Cfa006672 Carpinus fangiana
Cfa017421 Carpinus fangiana
Cfa022211 Carpinus fangiana
Ciclev10000154m.g Citrus clementina
Ciclev10013452m.g Citrus clementina
CiPaw.07G025500 Carya illinoinensis
CiPaw.09G189400 Carya illinoinensis
CiPaw.10G143500 Carya illinoinensis
ClCG03G006160 Citrullus lanatus
ClCG03G006190 Citrullus lanatus
ClCG03G017600 Citrullus lanatus
COL.COLO4_03801 Corchorus olitorius
COL.COLO4_34018 Corchorus olitorius
COL.COLO4_35714 Corchorus olitorius
Cpa.g.sc48.127 Carica papaya
Cre13.g564250 Chlamydomonas reinhardtii
CsaV3_1G037230 Cucumis sativus L.
CsaV3_1G037240 Cucumis sativus L.
CsaV3_1G037250 Cucumis sativus L.
CSS0020825 Camellia sinensis var. sinensis
CSS0050334 Camellia sinensis var. sinensis
DCAR_003377 Daucus carota
DCAR_014838 Daucus carota
DCAR_022132 Daucus carota
DCAR_031426 Daucus carota
Dinv05264 Davidia involucrata
Dinv24411 Davidia involucrata
Dinv30849 Davidia involucrata
Dinv30850 Davidia involucrata
Duzib106G0606 Durio zibethinus
Duzib177G0789 Durio zibethinus
ECA234G4518 Erigeron canadensis
ECA240G3079 Erigeron canadensis
ECA247G1225 Erigeron canadensis
EL10Ac4g09869 Beta vulgaris
Eucgr.H03271 Eucalyptus grandis
FAN01G2273 Fragaria x ananassa
FAN02G0527 Fragaria x ananassa
FAN03G2739 Fragaria x ananassa
FAN05G0606 Fragaria x ananassa
FAN07G2489 Fragaria x ananassa
FAN12G0216 Fragaria x ananassa
FAN12G4026 Fragaria x ananassa
FAN14G0019 Fragaria x ananassa
FvH4_4g19950 Fragaria vesca
FvH4_6g07021 Fragaria vesca
FvH4_7g29751 Fragaria vesca
Glyma.03G172200 Glycine max
Glyma.05G090700 Glycine max
Glyma.19G173100 Glycine max
Gohir.A02G127300 Gossypium hirsutum
Gohir.A08G206900 Gossypium hirsutum
Gohir.A08G207600 Gossypium hirsutum
Gohir.A11G268500 Gossypium hirsutum
Gohir.A11G270732 Gossypium hirsutum
Gohir.A11G301550 Gossypium hirsutum
Gohir.A13G119801 Gossypium hirsutum
Gohir.D08G224200 Gossypium hirsutum
Gohir.D11G278500 Gossypium hirsutum
Gohir.D11G280900 Gossypium hirsutum
Gorai.004G238100 Gossypium raimondii
Gorai.007G300600 Gossypium raimondii
Gorai.007G303300 Gossypium raimondii
GSVIVG01031192001 Vitis vinifera
HanXRQChr09g0247971 Helianthus annuus
HanXRQChr09g0247981 Helianthus annuus
HanXRQChr10g0293771 Helianthus annuus
HanXRQChr14g0452151 Helianthus annuus
Haze_04099 Corylus avellana
Haze_20749 Corylus avellana
Hma1.2p1_0472F.1_g159760 Hydrangea macrophylla
Hma1.2p1_1441F.1_g283600 Hydrangea macrophylla
HPP92_005828 Vanilla planifolia
HPP92_005829 Vanilla planifolia
HPP92_005830 Vanilla planifolia
HPP92_005857 Vanilla planifolia
HPP92_005911 Vanilla planifolia
Hund07119 Selenicereus undatus
Hund12489 Selenicereus undatus
Lalb_Chr01g0019231 Lupinus albus
Lalb_Chr20g0113231 Lupinus albus
Lj1g0021618 Lotus japonicus
Lj2A99G56 Lonicera japonica
Lj2P99G44 Lonicera japonica
Lsat_1_v5_gn_0_12760 Lactuca sativa
Lsat_1_v5_gn_1_55601 Lactuca sativa
Lsat_1_v5_gn_4_53080 Lactuca sativa
Lsat_1_v5_gn_5_106240 Lactuca sativa
Lsat_1_v5_gn_5_89641 Lactuca sativa
Lsat_1_v5_gn_6_39661 Lactuca sativa
Lsat_1_v5_gn_7_67461 Lactuca sativa
Lsat_1_v5_gn_9_123961 Lactuca sativa
Manes.08G114400 Manihot esculenta
Manes.09G174300 Manihot esculenta
Mapoly0080s0038 Marchantia polymorpha
MBI01_g01189_MAGBIO Magnolia biondii
MBI14_g43504_MAGBIO Magnolia biondii
MBI17_g38311_MAGBIO Magnolia biondii
MBI17_g38313_MAGBIO Magnolia biondii
MBI19_g33995_MAGBIO Magnolia biondii
MCO15G442 Micromonas commoda
MD04G1196800 Malus domestica
MD12G1209700 Malus domestica
Medtr7g053110 Medicago truncatula
Medtr7g087180 Medicago truncatula
Medtr7g098840 Medicago truncatula
Medtr7g099920 Medicago truncatula
MELO3C002819.2 Cucumis melo
MELO3C002821.2 Cucumis melo
MELO3C002822.2 Cucumis melo
MELO3C035497.2 Cucumis melo
MELO3C035644.2 Cucumis melo
Migut.F01887 Erythranthe guttata
Migut.F01888 Erythranthe guttata
Migut.H01296 Erythranthe guttata
MSTRG.18039 Avicennia marina
Nitab4.5_0000202g0170 Nicotiana tabacum
Nitab4.5_0000216g0080 Nicotiana tabacum
Nitab4.5_0002077g0030 Nicotiana tabacum
Nitab4.5_0003267g0030 Nicotiana tabacum
Nn2g12763 Nelumbo nucifera
Oeu026483.1 Olea europaea
Oeu036170.1 Olea europaea
Oeu036171.1 Olea europaea
Oeu038528.1 Olea europaea
Oeu041410.2 Olea europaea
Oeu049216.1 Olea europaea
Os01g0120800 Oryza sativa ssp. japonica
Peaxi162Scf00039g01224 Petunia axillaris
Peaxi162Scf01093g00011 Petunia axillaris
Peaxi162Scf01194g00134 Petunia axillaris
PGR031G1858 Punica granatum
PGR142G3882 Punica granatum
PGSC0003DMG400008926 Solanum tuberosum
PGSC0003DMG400010999 Solanum tuberosum
Phvul.001G169900 Phaseolus vulgaris
Potri.005G021400 Populus trichocarpa
Potri.013G011900 Populus trichocarpa
Pp3c26_11290 Physcomitrium patens
Pp3c3_10600 Physcomitrium patens
Pp3c4_26450 Physcomitrium patens
PRCOL_00004625 Prasinoderma coloniale
Prupe.6G317100 Prunus persica
Psat3g048960 Pisum sativum
PSO170G1119 Papaver somniferum
PSO170G4769 Papaver somniferum
PSO357G0420 Papaver somniferum
PSO528G0014 Papaver somniferum
QL03p017837 Quercus lobata
QL05p010646 Quercus lobata
QL07p047431 Quercus lobata
QL93p2009_0049 Quercus lobata
RcHm_v2.0_Chr2g0109021 Rosa chinensis
RcHm_v2.0_Chr3g0456551 Rosa chinensis
RcHm_v2.0_Chr5g0047251 Rosa chinensis
RcHm_v2.0_Chr6g0248701 Rosa chinensis
Rhsim05G0135800 Rhododendron simsii
Sabra05G0027400 Salix brachista
Sabra13G0010400 Salix brachista
SalBow2G2051 Salvia bowleyana
SalBow6G5981 Salvia bowleyana
Sc02g0009020 Simmondsia chinensis
Sc15g0004560 Simmondsia chinensis
Sed0023948 Sechium edule
SEGI_12975 Sequoiadendron giganteum
SEGI_14379 Sequoiadendron giganteum
SGA_v2.0_scaffold92G28161 Striga asiatica
SGA_v2.0_scaffold92G28166 Striga asiatica
SGA_v2.0_scaffold92G28173 Striga asiatica
SHI15014 Sapria himalayana
SMO358G0707 Selaginella moellendorffii
Solyc09g010460.3 Solanum lycopersicum
Solyc10g084670.3 Solanum lycopersicum
Sopen09g005200 Solanum pennellii
Sopen10g034110 Solanum pennellii
Sp6g06010 Schrenkiella parvula
TAR365G0313 Trochodendron aralioides
TAR374G0864 Trochodendron aralioides
TAR383G0809 Trochodendron aralioides
THA.LOC104814584 Tarenaya hassleriana
Thecc.01G130800 Theobroma cacao
Thecc.05G318700 Theobroma cacao
Thhalv10026980m.g Eutrema salsugineum
Thhalv10028395m.g Eutrema salsugineum
TPR.G21472 Trifolium pratense
TPR.G21685 Trifolium pratense
TPR.G24594 Trifolium pratense
TPR.G29575 Trifolium pratense
TPR.G40644 Trifolium pratense
TPR.G7841 Trifolium pratense
TWI12G0370 Tripterygium wilfordii
TWI36G0315 Tripterygium wilfordii
TWI56G0709 Tripterygium wilfordii
unitig_899.g15197 Utricularia gibba
vmacro06489 Vaccinium macrocarpon
VMungo1383G2288 Vigna mungo
Zm00001eb121480 Zea mays
Zm00001eb337210 Zea mays

User provided reference genes

Program Settings