Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p04430 Brassica napus
A07p02490 Brassica napus
A09p48510 Brassica napus
Aa31LG10G10530 Aethionema arabicum
Aa31LG10G10540 Aethionema arabicum
Aa31LG8G15770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.557 Anthoceros agrestis
Actinidia01842 Actinidia chinensis
Actinidia02962 Actinidia chinensis
Actinidia06866 Actinidia chinensis
Actinidia16281 Actinidia chinensis
Actinidia16282 Actinidia chinensis
Ah.10g032960 Amaranthus hybridus
Ah.11g042920 Amaranthus hybridus
AL3G51460 Arabidopsis lyrata
AL5G36660 Arabidopsis lyrata
Aqoxy4G00069 Aquilegia oxysepala
Aqoxy5G04166 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.EL0I67 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0Y7G8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N6X2T2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WNB9PN Arachis hypogaea
AT2G18220 Arabidopsis thaliana
AT3G55510 Arabidopsis thaliana
ATR0609G119 Amborella trichopoda
ATR0752G199 Amborella trichopoda
ATR0763G043 Amborella trichopoda
Atru.chr12.651 Acer truncatum
Atru.chr12.652 Acer truncatum
Atru.chr12.653 Acer truncatum
Atru.chr12.678 Acer truncatum
Atru.chr12.679 Acer truncatum
Atru.chr2.2210 Acer truncatum
AUR62001631 Chenopodium quinoa
AUR62020148 Chenopodium quinoa
AUR62020774 Chenopodium quinoa
AUR62027930 Chenopodium quinoa
AUR62044143 Chenopodium quinoa
BcaB01g00088 Brassica carinata
BcaB02g08414 Brassica carinata
BcaB02g08415 Brassica carinata
BcaB03g16611 Brassica carinata
BcaC02g09762 Brassica carinata
BcaC06g36386 Brassica carinata
BcaC07g39875 Brassica carinata
BolC3t18166H Brassica oleracea
BolC4t25252H Brassica oleracea
BolC7t40867H Brassica oleracea
BolC8t50702H Brassica oleracea
BraA04t16155Z Brassica rapa
BraA07t28045Z Brassica rapa
BraA09t40303Z Brassica rapa
C03p59050 Brassica napus
C04p36860 Brassica napus
C05p45100 Brassica napus
C07p04660 Brassica napus
C08p30800 Brassica napus
CAN.G254.9 Capsicum annuum
CAN.G809.66 Capsicum annuum
CANSAT78G1360 Cannabis sativa
CARHR108750 Cardamine hirsuta
CARHR163150 Cardamine hirsuta
CARHR165560 Cardamine hirsuta
Carub.0003s3239 Capsella rubella
Carub.0005s2223 Capsella rubella
Ca_04677_v3 Cicer arietinum L.
Ca_11394_v3 Cicer arietinum L.
Ca_30896_v3 Cicer arietinum L.
CBR_g20280 Chara braunii
Cc00_g28190 Coffea canephora
Cc01_g05200 Coffea canephora
Cc02_g11370 Coffea canephora
CDE02G2488 Ceratophyllum demersum
CDE04G1968 Ceratophyllum demersum
Cfa001600 Carpinus fangiana
Cfa010285 Carpinus fangiana
Cfa023248 Carpinus fangiana
Ciclev10014393m.g Citrus clementina
Ciclev10030815m.g Citrus clementina
CiPaw.01G275800 Carya illinoinensis
CiPaw.14G129400 Carya illinoinensis
ClCG09G020470 Citrullus lanatus
ClCG11G007030 Citrullus lanatus
COL.COLO4_05528 Corchorus olitorius
COL.COLO4_07091 Corchorus olitorius
Cpa.g.sc235.7 Carica papaya
Cpa.g.sc53.27 Carica papaya
Cre09.g391652 Chlamydomonas reinhardtii
CsaV3_2G034180 Cucumis sativus L.
CsaV3_3G019010 Cucumis sativus L.
CSS0003608 Camellia sinensis var. sinensis
DCAR_006461 Daucus carota
DCAR_024389 Daucus carota
Dinv31352 Davidia involucrata
Dinv36321 Davidia involucrata
Duzib114G1037 Durio zibethinus
Duzib128G0393 Durio zibethinus
ECA233G6155 Erigeron canadensis
ECA234G4551 Erigeron canadensis
EL10Ac2g03569 Beta vulgaris
EL10Ac7g16185 Beta vulgaris
EL10Ac8g18388 Beta vulgaris
Eucgr.B03642 Eucalyptus grandis
Eucgr.G02808 Eucalyptus grandis
FAN11G3610 Fragaria x ananassa
FAN15G1309 Fragaria x ananassa
FAN20G0077 Fragaria x ananassa
FAN21G1479 Fragaria x ananassa
FAN24G3467 Fragaria x ananassa
FAN25G2153 Fragaria x ananassa
FAN27G0297 Fragaria x ananassa
FvH4_2g10660 Fragaria vesca
FvH4_3g44260 Fragaria vesca
Glyma.05G088850 Glycine max
Glyma.05G088902 Glycine max
Glyma.05G088952 Glycine max
Glyma.13G335000 Glycine max
Glyma.15G039500 Glycine max
Glyma.17G186500 Glycine max
Gohir.A08G204600 Gossypium hirsutum
Gohir.A12G077000 Gossypium hirsutum
Gohir.D08G221900 Gossypium hirsutum
Gohir.D12G075200 Gossypium hirsutum
Gorai.004G235600 Gossypium raimondii
Gorai.008G083900 Gossypium raimondii
GSVIVG01016319001 Vitis vinifera
GSVIVG01037396001 Vitis vinifera
HanXRQChr02g0056671 Helianthus annuus
HanXRQChr14g0455921 Helianthus annuus
Haze_16928 Corylus avellana
Haze_23015 Corylus avellana
Hma1.2p1_0074F.1_g039040 Hydrangea macrophylla
Hma1.2p1_0453F.1_g156031 Hydrangea macrophylla
HPP92_014638 Vanilla planifolia
HPP92_014639 Vanilla planifolia
HPP92_014667 Vanilla planifolia
Hund18841 Selenicereus undatus
Hund22491 Selenicereus undatus
Lalb_Chr06g0164451 Lupinus albus
Lalb_Chr06g0176371 Lupinus albus
Lj1A920T52 Lonicera japonica
Lj1C922T8 Lonicera japonica
Lj2A672T48 Lonicera japonica
Lj2g0017300 Lotus japonicus
Lj5g0026664 Lotus japonicus
Lsat_1_v5_gn_5_129941 Lactuca sativa
Lsat_1_v5_gn_6_50761 Lactuca sativa
Lsat_1_v5_gn_9_91780 Lactuca sativa
Manes.10G043700 Manihot esculenta
Manes.17G118000 Manihot esculenta
Mapoly0061s0134 Marchantia polymorpha
MBI03_g11911_MAGBIO Magnolia biondii
MCO16G202 Micromonas commoda
MD01G1111800 Malus domestica
MD03G1015600 Malus domestica
MD07G1178300 Malus domestica
MD11G1016800 Malus domestica
Medtr1g110560 Medicago truncatula
Medtr6g033410 Medicago truncatula
MELO3C008200.2 Cucumis melo
MELO3C019491.2 Cucumis melo
MELO3C025507.2 Cucumis melo
Migut.D00544 Erythranthe guttata
Migut.F01987 Erythranthe guttata
Migut.K01208 Erythranthe guttata
MSTRG.27469 Avicennia marina
Nitab4.5_0000534g0040 Nicotiana tabacum
Nitab4.5_0001053g0020 Nicotiana tabacum
Nitab4.5_0006794g0020 Nicotiana tabacum
Nitab4.5_0011845g0010 Nicotiana tabacum
Nn4g24880 Nelumbo nucifera
Nn4g24882 Nelumbo nucifera
Nn4g25047 Nelumbo nucifera
Oeu037454.1 Olea europaea
Oeu043307.2 Olea europaea
Os10g0495500 Oryza sativa ssp. japonica
Os12g0163200 Oryza sativa ssp. japonica
Peaxi162Scf00048g01725 Petunia axillaris
Peaxi162Scf00851g00425 Petunia axillaris
PGR102G0507 Punica granatum
PGR142G4195 Punica granatum
PGSC0003DMG400017744 Solanum tuberosum
Phvul.004G075200 Phaseolus vulgaris
Phvul.007G004700 Phaseolus vulgaris
Potri.001G012800 Populus trichocarpa
Potri.003G213450 Populus trichocarpa
Potri.003G213601 Populus trichocarpa
Potri.008G043400 Populus trichocarpa
Pp3c24_4150 Physcomitrium patens
PRCOL_00006336 Prasinoderma coloniale
Prupe.2G217500 Prunus persica
Prupe.6G014700 Prunus persica
Psat1g099480 Pisum sativum
Psat1g136480 Pisum sativum
Psat6g226520 Pisum sativum
PSO063G2433 Papaver somniferum
PSO063G4785 Papaver somniferum
PSO170G5574 Papaver somniferum
PSO675G5612 Papaver somniferum
QL04p060728 Quercus lobata
QL04p079433 Quercus lobata
QL08p056686 Quercus lobata
QL08p056695 Quercus lobata
RcHm_v2.0_Chr5g0044521 Rosa chinensis
RcHm_v2.0_Chr5g0080571 Rosa chinensis
Rhsim07G0129500 Rhododendron simsii
Rhsim13G0227000 Rhododendron simsii
Sabra01G0009500 Salix brachista
Sabra08G0030000 Salix brachista
Sabra16G0321500 Salix brachista
Sabra16G0323300 Salix brachista
Sabra16G0323500 Salix brachista
SalBow2G0823 Salvia bowleyana
SalBow4G1919 Salvia bowleyana
Sc20g0002140 Simmondsia chinensis
Sc22g0005180 Simmondsia chinensis
Sed0003300 Sechium edule
Sed0003342 Sechium edule
SEGI_11973 Sequoiadendron giganteum
SEGI_19573 Sequoiadendron giganteum
SEGI_31704 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00764 Striga asiatica
SGA_v2.0_scaffold62G21413 Striga asiatica
SHI08944 Sapria himalayana
SHI30489 Sapria himalayana
SMO347G0030 Selaginella moellendorffii
Solyc02g081680.4 Solanum lycopersicum
Solyc05g023710.3 Solanum lycopersicum
Sopen02g026290 Solanum pennellii
Sopen05g018320 Solanum pennellii
Sp3g31630 Schrenkiella parvula
Sp5g06970 Schrenkiella parvula
TAR362G0246 Trochodendron aralioides
TAR627G0637 Trochodendron aralioides
TAR633G0485 Trochodendron aralioides
THA.LOC104811191 Tarenaya hassleriana
THA.LOC104826737 Tarenaya hassleriana
Thecc.05G325500 Theobroma cacao
Thecc.10G069200 Theobroma cacao
Thhalv10010312m.g Eutrema salsugineum
Thhalv10022567m.g Eutrema salsugineum
TPR.G1846 Trifolium pratense
TPR.G18797 Trifolium pratense
TPR.G36621 Trifolium pratense
TPR.G38575 Trifolium pratense
TWI15G0990 Tripterygium wilfordii
TWI23G0969 Tripterygium wilfordii
unitig_22.g5309 Utricularia gibba
unitig_46.g18596 Utricularia gibba
vmacro07161 Vaccinium macrocarpon
vmacro07162 Vaccinium macrocarpon
vmacro21749 Vaccinium macrocarpon
VMungo0251G1317 Vigna mungo
VMungo0464G1285 Vigna mungo
VMungo0720G2693 Vigna mungo
Zm00001eb004610 Zea mays
Zm00001eb008040 Zea mays
Zm00001eb054850 Zea mays
Zm00001eb093290 Zea mays
Zm00001eb203560 Zea mays
Zm00001eb217460 Zea mays
Zm00001eb220970 Zea mays

User provided reference genes

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