Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p11000 Brassica napus
A08p31770 Brassica napus
A09p41640 Brassica napus
A09p61670 Brassica napus
Aa31LG1G120 Aethionema arabicum
Aa31LG4G10140 Aethionema arabicum
Aa31LG7G7070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.205 Anthoceros agrestis
Actinidia17964 Actinidia chinensis
Actinidia37875 Actinidia chinensis
Actinidia38177 Actinidia chinensis
Ah.04g150840 Amaranthus hybridus
Ah.04g159650 Amaranthus hybridus
Ah.06g194790 Amaranthus hybridus
AL1G27040 Arabidopsis lyrata
AL1G36670 Arabidopsis lyrata
AL5G10460 Arabidopsis lyrata
Aqoxy1G00410 Aquilegia oxysepala
Aqoxy2G00446 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.56ZP6Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJWA8Z Arachis hypogaea
AT1G14980 Arabidopsis thaliana
AT1G23100 Arabidopsis thaliana
ATR0307G010 Amborella trichopoda
ATR0564G110 Amborella trichopoda
Atru.chr11.486 Acer truncatum
Atru.chr3.2858 Acer truncatum
AUR62000219 Chenopodium quinoa
AUR62006564 Chenopodium quinoa
AUR62018369 Chenopodium quinoa
AUR62026424 Chenopodium quinoa
AUR62030293 Chenopodium quinoa
AUR62038765 Chenopodium quinoa
BcaB02g06562 Brassica carinata
BcaB03g13078 Brassica carinata
BcaB07g32303 Brassica carinata
BcaC05g25430 Brassica carinata
BcaC05g26218 Brassica carinata
BcaC07g38765 Brassica carinata
BolC5t30049H Brassica oleracea
BolC5t30931H Brassica oleracea
BolC8t49323H Brassica oleracea
BolC8t52073H Brassica oleracea
BraA06t24280Z Brassica rapa
BraA08t35099Z Brassica rapa
BraA09t41539Z Brassica rapa
C05p13050 Brassica napus
C05p22310 Brassica napus
C08p16960 Brassica napus
C08p45250 Brassica napus
CAN.G1156.35 Capsicum annuum
CAN.G193.18 Capsicum annuum
CANSAT54G0500 Cannabis sativa
CANSAT54G0952 Cannabis sativa
CARHR015510 Cardamine hirsuta
CARHR023480 Cardamine hirsuta
Carub.0001s1475 Capsella rubella
Carub.0001s2262 Capsella rubella
Ca_18742_v3 Cicer arietinum L.
Ca_29580_v3 Cicer arietinum L.
Cc06_g19940 Coffea canephora
Cc11_g08510 Coffea canephora
CDE05G3008 Ceratophyllum demersum
CDE11G0944 Ceratophyllum demersum
Cfa008622 Carpinus fangiana
Cfa019987 Carpinus fangiana
Ciclev10017289m.g Citrus clementina
Ciclev10018326m.g Citrus clementina
CiPaw.06G046700 Carya illinoinensis
CiPaw.09G049500 Carya illinoinensis
CiPaw.10G042000 Carya illinoinensis
CiPaw.14G110700 Carya illinoinensis
ClCG01G006240 Citrullus lanatus
ClCG04G005740 Citrullus lanatus
COL.COLO4_13157 Corchorus olitorius
COL.COLO4_24932 Corchorus olitorius
Cpa.g.sc7.90 Carica papaya
Cpa.g.sc7.91 Carica papaya
Cpa.g.sc7.95 Carica papaya
Cre03.g178450 Chlamydomonas reinhardtii
CsaV3_4G029380 Cucumis sativus L.
CsaV3_5G028420 Cucumis sativus L.
CSS0006165 Camellia sinensis var. sinensis
CSS0020141 Camellia sinensis var. sinensis
CSS0022101 Camellia sinensis var. sinensis
CSS0040674 Camellia sinensis var. sinensis
CSS0046038 Camellia sinensis var. sinensis
CSS0047391 Camellia sinensis var. sinensis
DCAR_007304 Daucus carota
DCAR_020586 Daucus carota
DCAR_030228 Daucus carota
Dinv07659 Davidia involucrata
Dinv08257 Davidia involucrata
Dinv14422 Davidia involucrata
Duzib150G0258 Durio zibethinus
Duzib168G1932 Durio zibethinus
Duzib170G1059 Durio zibethinus
Duzib248G0130 Durio zibethinus
Duzib251G0669 Durio zibethinus
ECA233G4104 Erigeron canadensis
ECA246G1146 Erigeron canadensis
EL10Ac3g07260 Beta vulgaris
EL10Ac4g10088 Beta vulgaris
Eucgr.B02909 Eucalyptus grandis
Eucgr.B03754 Eucalyptus grandis
FAN07G0569 Fragaria x ananassa
FAN12G2204 Fragaria x ananassa
FAN17G0885 Fragaria x ananassa
FAN22G1430 Fragaria x ananassa
FvH4_4g32620 Fragaria vesca
Glyma.03G125800 Glycine max
Glyma.06G268300 Glycine max
Glyma.07G219000 Glycine max
Glyma.19G128300 Glycine max
Glyma.20G017200 Glycine max
Gohir.A08G008800 Gossypium hirsutum
Gohir.A09G108200 Gossypium hirsutum
Gohir.D08G018800 Gossypium hirsutum
Gohir.D09G105500 Gossypium hirsutum
Gorai.004G013300 Gossypium raimondii
Gorai.006G122100 Gossypium raimondii
GSVIVG01011742001 Vitis vinifera
GSVIVG01025759001 Vitis vinifera
GSVIVG01037354001 Vitis vinifera
HanXRQChr08g0212111 Helianthus annuus
HanXRQChr12g0364341 Helianthus annuus
Haze_10985 Corylus avellana
Haze_20247 Corylus avellana
Haze_26691 Corylus avellana
Hma1.2p1_0096F.1_g047750 Hydrangea macrophylla
HPP92_013909 Vanilla planifolia
HPP92_025061 Vanilla planifolia
Hund21961 Selenicereus undatus
Hund24563 Selenicereus undatus
Lalb_Chr05g0219571 Lupinus albus
Lalb_Chr09g0328571 Lupinus albus
Lalb_Chr14g0365671 Lupinus albus
Lalb_Chr22g0357711 Lupinus albus
Lj1g0012767 Lotus japonicus
Lj4g0011340 Lotus japonicus
Lsat_1_v5_gn_7_62041 Lactuca sativa
Lsat_1_v5_gn_8_44661 Lactuca sativa
Manes.02G138200 Manihot esculenta
Manes.13G075800 Manihot esculenta
Manes.15G128700 Manihot esculenta
Manes.17G078100 Manihot esculenta
Mapoly0005s0017 Marchantia polymorpha
MBI12_g40233_MAGBIO Magnolia biondii
MBI13_g05977_MAGBIO Magnolia biondii
MBI13_g09209_MAGBIO Magnolia biondii
MBI19_g07496_MAGBIO Magnolia biondii
MBI19_g19208_MAGBIO Magnolia biondii
MCO08G048 Micromonas commoda
MD05G1047600 Malus domestica
MD09G1215100 Malus domestica
MD09G1260100 Malus domestica
MD13G1024100 Malus domestica
MD16G1026800 Malus domestica
Medtr3g077350 Medicago truncatula
Medtr3g110030 Medicago truncatula
Medtr7g089300 Medicago truncatula
MELO3C005305.2 Cucumis melo
MELO3C019112.2 Cucumis melo
Migut.E00435 Erythranthe guttata
Migut.J01635 Erythranthe guttata
MSTRG.19786 Avicennia marina
Nitab4.5_0000496g0200 Nicotiana tabacum
Nitab4.5_0006582g0030 Nicotiana tabacum
Nn1g04147 Nelumbo nucifera
Nn3g18252 Nelumbo nucifera
Nn6g33280 Nelumbo nucifera
Nn7g36872 Nelumbo nucifera
Os03g0366000 Oryza sativa ssp. japonica
Os07g0641700 Oryza sativa ssp. japonica
Peaxi162Scf00081g00264 Petunia axillaris
Peaxi162Scf00353g00216 Petunia axillaris
Peaxi162Scf00360g00014 Petunia axillaris
Peaxi162Scf00642g00038 Petunia axillaris
PGR102G2737 Punica granatum
PGR119G0171 Punica granatum
PGSC0003DMG400028744 Solanum tuberosum
PGSC0003DMG402023448 Solanum tuberosum
Phvul.001G120500 Phaseolus vulgaris
Phvul.002G095400 Phaseolus vulgaris
Potri.001G274300 Populus trichocarpa
Potri.008G130500 Populus trichocarpa
Potri.009G068900 Populus trichocarpa
Potri.010G111600 Populus trichocarpa
Pp3c12_25160 Physcomitrium patens
Pp3c4_3100 Physcomitrium patens
Pp3c8_7208 Physcomitrium patens
Pp3c8_7210 Physcomitrium patens
PRCOL_00002479 Prasinoderma coloniale
Prupe.1G326400 Prunus persica
Prupe.3G151700 Prunus persica
Prupe.7G030600 Prunus persica
Psat0s3602g0040 Pisum sativum
Psat3g080640 Pisum sativum
PSO339G0596 Papaver somniferum
PSO339G1957 Papaver somniferum
PSO384G1439 Papaver somniferum
PSO384G4833 Papaver somniferum
QL01p001343 Quercus lobata
QL01p016515 Quercus lobata
QL07p011767 Quercus lobata
RcHm_v2.0_Chr4g0441491 Rosa chinensis
Rhsim04G0113500 Rhododendron simsii
Rhsim09G0066000 Rhododendron simsii
Sabra08G0099500 Salix brachista
Sabra09G0051900 Salix brachista
SalBow2G3332 Salvia bowleyana
SalBow6G3567 Salvia bowleyana
SalBow8G0408 Salvia bowleyana
SalBow8G0519 Salvia bowleyana
Sc09g0001120 Simmondsia chinensis
Sc13g0001010 Simmondsia chinensis
Sc16g0010900 Simmondsia chinensis
Sed0002018 Sechium edule
Sed0006882 Sechium edule
Sed0015647 Sechium edule
Sed0021375 Sechium edule
Sed0027445 Sechium edule
Sed0028081 Sechium edule
SEGI_36692 Sequoiadendron giganteum
SGA_v2.0_scaffold257G45693 Striga asiatica
SGA_v2.0_scaffold66G22272 Striga asiatica
SMO118G0048 Selaginella moellendorffii
SMO174G0073 Selaginella moellendorffii
SMO351G0600 Selaginella moellendorffii
SMO367G1080 Selaginella moellendorffii
Solyc05g056390.2 Solanum lycopersicum
Solyc07g008800.4 Solanum lycopersicum
Sopen05g034780 Solanum pennellii
Sopen07g004740 Solanum pennellii
Sp1g13370 Schrenkiella parvula
Sp1g20540 Schrenkiella parvula
Sp5g26080 Schrenkiella parvula
TAR374G1271 Trochodendron aralioides
TAR623G1684 Trochodendron aralioides
TAR633G1309 Trochodendron aralioides
TAR633G1572 Trochodendron aralioides
TAR636G0931 Trochodendron aralioides
THA.LOC104805069 Tarenaya hassleriana
THA.LOC104809183 Tarenaya hassleriana
THA.LOC104823825 Tarenaya hassleriana
Thecc.02G283100 Theobroma cacao
Thecc.09G254800 Theobroma cacao
Thhalv10001087m.g Eutrema salsugineum
Thhalv10009183m.g Eutrema salsugineum
Thhalv10009186m.g Eutrema salsugineum
Thhalv10019366m.g Eutrema salsugineum
TPR.G16074 Trifolium pratense
TWI31G1264 Tripterygium wilfordii
TWI75G0148 Tripterygium wilfordii
TWI79G1004 Tripterygium wilfordii
unitig_22.g5589 Utricularia gibba
unitig_744.g24178 Utricularia gibba
vmacro00409 Vaccinium macrocarpon
vmacro08999 Vaccinium macrocarpon
Zm00001eb017830 Zea mays
Zm00001eb110270 Zea mays
Zm00001eb290400 Zea mays
Zm00001eb329030 Zea mays

User provided reference genes

Program Settings