Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p21320 Brassica napus
A10p30850 Brassica napus
Aa31LG11G6440 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1626 Anthoceros agrestis
Actinidia00651 Actinidia chinensis
Actinidia00981 Actinidia chinensis
Actinidia11542 Actinidia chinensis
Actinidia20775 Actinidia chinensis
Actinidia29060 Actinidia chinensis
Ah.08g209930 Amaranthus hybridus
Ah.16g104030 Amaranthus hybridus
AL4G35720 Arabidopsis lyrata
AL6G15250 Arabidopsis lyrata
Aqoxy2G00763 Aquilegia oxysepala
Aqoxy4G02182 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.362ZE3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.41HY5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.44F5TB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4R71L9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4TR24J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5VLU3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IC8UP1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KZM7IW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RX63I5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UD5IAC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VTJ7I3 Arachis hypogaea
AT2G38450 Arabidopsis thaliana
AT5G05360 Arabidopsis thaliana
ATR0594G142 Amborella trichopoda
Atru.chr12.130 Acer truncatum
AUR62006308 Chenopodium quinoa
AUR62012325 Chenopodium quinoa
AUR62022967 Chenopodium quinoa
AUR62026353 Chenopodium quinoa
BcaB01g03683 Brassica carinata
BcaB01g05714 Brassica carinata
BcaB01g05946 Brassica carinata
BcaC01g05537 Brassica carinata
BcaC01g05538 Brassica carinata
BcaC06g32246 Brassica carinata
BcaC06g32248 Brassica carinata
BolC3t12813H Brassica oleracea
BolC3t14911H Brassica oleracea
BolC3t14915H Brassica oleracea
BolC9t59897H Brassica oleracea
BraA03t09591Z Brassica rapa
BraA03t11367Z Brassica rapa
BraA10t45128Z Brassica rapa
C03p25200 Brassica napus
C09p71350 Brassica napus
CAN.G670.2 Capsicum annuum
CANSAT56G2578 Cannabis sativa
CARHR133130 Cardamine hirsuta
CARHR207880 Cardamine hirsuta
Carub.0004s2042 Capsella rubella
Carub.0006s0428 Capsella rubella
Carub.0008s0600 Capsella rubella
Ca_07715_v3 Cicer arietinum L.
Ca_15173_v3 Cicer arietinum L.
CBR_g20420 Chara braunii
Cc02_g05800 Coffea canephora
CDE04G1410 Ceratophyllum demersum
CDE04G2078 Ceratophyllum demersum
Cfa001242 Carpinus fangiana
Cfa017096 Carpinus fangiana
Cfa017098 Carpinus fangiana
Ciclev10013155m.g Citrus clementina
Ciclev10033159m.g Citrus clementina
CiPaw.01G303200 Carya illinoinensis
CiPaw.02G196900 Carya illinoinensis
CiPaw.09G216500 Carya illinoinensis
ClCG07G004760 Citrullus lanatus
ClCG10G022470 Citrullus lanatus
COL.COLO4_14436 Corchorus olitorius
COL.COLO4_25816 Corchorus olitorius
Cpa.g.sc19.107 Carica papaya
Cpa.g.sc5.253 Carica papaya
Cre10.g418000 Chlamydomonas reinhardtii
Cre12.g536500 Chlamydomonas reinhardtii
CsaV3_3G033390 Cucumis sativus L.
CsaV3_5G010680 Cucumis sativus L.
CSS0002935 Camellia sinensis var. sinensis
CSS0005050 Camellia sinensis var. sinensis
CSS0008193 Camellia sinensis var. sinensis
CSS0035087 Camellia sinensis var. sinensis
DCAR_011867 Daucus carota
DCAR_011868 Daucus carota
DCAR_018661 Daucus carota
DCAR_023990 Daucus carota
Dinv10564 Davidia involucrata
Dinv21804 Davidia involucrata
Dinv25281 Davidia involucrata
Dinv26374 Davidia involucrata
Dinv35423 Davidia involucrata
Duzib093G1785 Durio zibethinus
Duzib106G1112 Durio zibethinus
Duzib106G1894 Durio zibethinus
Duzib128G1981 Durio zibethinus
ECA233G2102 Erigeron canadensis
ECA247G1666 Erigeron canadensis
ECA248G2432 Erigeron canadensis
EL10Ac2g04304 Beta vulgaris
EL10Ac7g17019 Beta vulgaris
Eucgr.A00636 Eucalyptus grandis
Eucgr.J00156 Eucalyptus grandis
FAN01G1065 Fragaria x ananassa
FAN02G3323 Fragaria x ananassa
FAN03G3420 Fragaria x ananassa
FAN04G2264 Fragaria x ananassa
FAN06G1241 Fragaria x ananassa
FAN06G2112 Fragaria x ananassa
FAN09G0202 Fragaria x ananassa
FAN10G2325 Fragaria x ananassa
FAN14G0533 Fragaria x ananassa
FAN20G0998 Fragaria x ananassa
FAN23G2860 Fragaria x ananassa
FvH4_6g10270 Fragaria vesca
FvH4_7g25430 Fragaria vesca
Glyma.01G128500 Glycine max
Glyma.03G041800 Glycine max
Glyma.09G280000 Glycine max
Glyma.11G234200 Glycine max
Glyma.18G022800 Glycine max
Glyma.18G209000 Glycine max
Gohir.A04G096100 Gossypium hirsutum
Gohir.A06G159900 Gossypium hirsutum
Gohir.A10G240500 Gossypium hirsutum
Gohir.D04G135900 Gossypium hirsutum
Gohir.D06G165700 Gossypium hirsutum
Gohir.D10G252080 Gossypium hirsutum
Gohir.D10G252520 Gossypium hirsutum
Gorai.010G193200 Gossypium raimondii
Gorai.012G119700 Gossypium raimondii
GSVIVG01030249001 Vitis vinifera
GSVIVG01032727001 Vitis vinifera
HanXRQChr08g0222631 Helianthus annuus
HanXRQChr10g0287861 Helianthus annuus
HanXRQChr15g0463401 Helianthus annuus
Haze_17315 Corylus avellana
Haze_21103 Corylus avellana
HPP92_001134 Vanilla planifolia
HPP92_013849 Vanilla planifolia
HPP92_013863 Vanilla planifolia
HPP92_025114 Vanilla planifolia
Hund13520 Selenicereus undatus
Hund15863 Selenicereus undatus
Hund19849 Selenicereus undatus
Lalb_Chr01g0023461 Lupinus albus
Lalb_Chr05g0229331 Lupinus albus
Lalb_Chr07g0190851 Lupinus albus
Lalb_Chr10g0105361 Lupinus albus
Lalb_Chr11g0075141 Lupinus albus
Lj3P944T13 Lonicera japonica
Lj6g0025671 Lotus japonicus
Lj6g0027640 Lotus japonicus
Lju41C22T2 Lonicera japonica
Lsat_1_v5_gn_8_13321 Lactuca sativa
Lsat_1_v5_gn_9_37041 Lactuca sativa
Manes.07G136700 Manihot esculenta
Manes.08G174200 Manihot esculenta
Manes.09G113200 Manihot esculenta
Mapoly0197s0015 Marchantia polymorpha
MCO12G165 Micromonas commoda
MD04G1168100 Malus domestica
MD07G1228700 Malus domestica
MD12G1181500 Malus domestica
Medtr3g072010 Medicago truncatula
Medtr7g071210 Medicago truncatula
MELO3C009130.2 Cucumis melo
MELO3C020102.2 Cucumis melo
Migut.F00614 Erythranthe guttata
Migut.J00085 Erythranthe guttata
MSTRG.27292 Avicennia marina
MSTRG.5533 Avicennia marina
MSTRG.8911 Avicennia marina
Nitab4.5_0001291g0010 Nicotiana tabacum
Nitab4.5_0002784g0030 Nicotiana tabacum
Nitab4.5_0002854g0090 Nicotiana tabacum
Nitab4.5_0003350g0010 Nicotiana tabacum
Nitab4.5_0003369g0020 Nicotiana tabacum
Nn2g11040 Nelumbo nucifera
Nn2g13288 Nelumbo nucifera
Oeu008078.1 Olea europaea
Oeu020412.1 Olea europaea
Oeu026967.1 Olea europaea
Os03g0298600 Oryza sativa ssp. japonica
Os05g0342900 Oryza sativa ssp. japonica
Peaxi162Scf00304g00025 Petunia axillaris
Peaxi162Scf02614g00004 Petunia axillaris
PGR031G1625 Punica granatum
PGR044G2377 Punica granatum
PGSC0003DMG400017898 Solanum tuberosum
Phvul.001G247500 Phaseolus vulgaris
Phvul.008G090100 Phaseolus vulgaris
Phvul.010G062000 Phaseolus vulgaris
Potri.008G075000 Populus trichocarpa
Potri.010G182400 Populus trichocarpa
Potri.016G128700 Populus trichocarpa
Pp3c19_7670 Physcomitrium patens
Prupe.2G258800 Prunus persica
Prupe.6G286300 Prunus persica
Psat0s2845g0240 Pisum sativum
Psat5g125880 Pisum sativum
PSO017G1787 Papaver somniferum
PSO339G4911 Papaver somniferum
PSO384G2096 Papaver somniferum
QL07p033634 Quercus lobata
QL08p064189 Quercus lobata
RcHm_v2.0_Chr1g0371401 Rosa chinensis
RcHm_v2.0_Chr1g0371721 Rosa chinensis
RcHm_v2.0_Chr3g0461011 Rosa chinensis
Rhsim05G0226900 Rhododendron simsii
Rhsim09G0181800 Rhododendron simsii
Sabra08G0055500 Salix brachista
Sabra10G0139700 Salix brachista
Sabra10G0139800 Salix brachista
Sabra16G0129800 Salix brachista
SalBow3G2803 Salvia bowleyana
SalBow4G1189 Salvia bowleyana
SalBow5G3629 Salvia bowleyana
SalBow8G4413 Salvia bowleyana
Sc14g0005560 Simmondsia chinensis
Sc20g0006760 Simmondsia chinensis
Sed0010561 Sechium edule
Sed0016364 Sechium edule
SEGI_06142 Sequoiadendron giganteum
SEGI_17067 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33154 Striga asiatica
SGA_v2.0_scaffold152G36842 Striga asiatica
SGA_v2.0_scaffold215G42312 Striga asiatica
SGA_v2.0_scaffold21G09338 Striga asiatica
SGA_v2.0_scaffold44G16648 Striga asiatica
SGA_v2.0_scaffold60G20943 Striga asiatica
SGA_v2.0_scaffold81G26040 Striga asiatica
SGA_v2.0_scaffold85G26670 Striga asiatica
SHI12888 Sapria himalayana
Solyc06g050730.4 Solanum lycopersicum
Sopen06g016290 Solanum pennellii
Sp3g07230 Schrenkiella parvula
Sp4g20770 Schrenkiella parvula
Sp6g37470 Schrenkiella parvula
TAR369G0601 Trochodendron aralioides
TAR623G0046 Trochodendron aralioides
TAR623G0897 Trochodendron aralioides
TAR633G2496 Trochodendron aralioides
THA.LOC104806101 Tarenaya hassleriana
THA.LOC104806634 Tarenaya hassleriana
THA.LOC104816524 Tarenaya hassleriana
Thecc.05G005100 Theobroma cacao
Thecc.10G008200 Theobroma cacao
Thhalv10014886m.g Eutrema salsugineum
Thhalv10017381m.g Eutrema salsugineum
TPR.G18658 Trifolium pratense
TPR.G35651 Trifolium pratense
TWI53G0634 Tripterygium wilfordii
TWI74G0891 Tripterygium wilfordii
vmacro09990 Vaccinium macrocarpon
vmacro20335 Vaccinium macrocarpon
VMungo0331G1945 Vigna mungo
VMungo1383G0377 Vigna mungo
Zm00001eb013850 Zea mays
Zm00001eb286530 Zea mays
Zm00001eb350290 Zea mays

User provided reference genes

Program Settings