Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p02620 Brassica napus
A05p37770 Brassica napus
A09p07380 Brassica napus
A10p30250 Brassica napus
Aa31LG11G7180 Aethionema arabicum
Aa31LG3G4950 Aethionema arabicum
Aa31sc2197G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.206 Anthoceros agrestis
Actinidia05397 Actinidia chinensis
Actinidia32708 Actinidia chinensis
Ah.08g210320 Amaranthus hybridus
Ah.08g210330 Amaranthus hybridus
AL3G23110 Arabidopsis lyrata
AL6G16220 Arabidopsis lyrata
Aqoxy2G01049 Aquilegia oxysepala
Aqoxy7G01496 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.724RE1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9YR8R7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EIYV9M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J4PW6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QTC26F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YJVB5K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YXQT7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z587I1 Arachis hypogaea
AT3G11560 Arabidopsis thaliana
AT5G06220 Arabidopsis thaliana
ATR0081G061 Amborella trichopoda
ATR0705G167 Amborella trichopoda
Atru.chr1.3465 Acer truncatum
Atru.chr8.1437 Acer truncatum
AUR62006244 Chenopodium quinoa
AUR62028482 Chenopodium quinoa
BcaB01g05735 Brassica carinata
BcaB01g05984 Brassica carinata
BcaB05g23614 Brassica carinata
BcaB06g25608 Brassica carinata
BcaB06g26365 Brassica carinata
BcaC05g29355 Brassica carinata
BcaC06g32329 Brassica carinata
BcaC06g32332 Brassica carinata
BcaC06g32587 Brassica carinata
BcaC06g34664 Brassica carinata
BolC3t12851H Brassica oleracea
BolC5t34306H Brassica oleracea
BolC9t59822H Brassica oleracea
BraA03t09623Z Brassica rapa
BraA05t22572Z Brassica rapa
BraA10t45063Z Brassica rapa
C01p33710 Brassica napus
C03p03010 Brassica napus
C05p56390 Brassica napus
C07p25890 Brassica napus
C09p70660 Brassica napus
CAN.G1152.15 Capsicum annuum
CAN.G397.91 Capsicum annuum
CAN.G645.13 Capsicum annuum
CAN.G999.46 Capsicum annuum
CANSAT56G2264 Cannabis sativa
CANSAT64G0891 Cannabis sativa
CARHR086110 Cardamine hirsuta
CARHR206920 Cardamine hirsuta
Carub.0003s1088 Capsella rubella
Carub.0006s0509 Capsella rubella
Ca_09028_v3 Cicer arietinum L.
Ca_25956_v3 Cicer arietinum L.
CBR_g49508 Chara braunii
Cc04_g02790 Coffea canephora
Cc06_g06230 Coffea canephora
CDE04G1506 Ceratophyllum demersum
CDE12G0162 Ceratophyllum demersum
Cfa002116 Carpinus fangiana
Cfa016652 Carpinus fangiana
Ciclev10011033m.g Citrus clementina
Ciclev10025016m.g Citrus clementina
CiPaw.02G147400 Carya illinoinensis
CiPaw.10G012900 Carya illinoinensis
ClCG04G010240 Citrullus lanatus
COL.COLO4_28368 Corchorus olitorius
COL.COLO4_29664 Corchorus olitorius
COL.COLO4_29665 Corchorus olitorius
COL.COLO4_30475 Corchorus olitorius
Cpa.g.c31932.2 Carica papaya
Cpa.g.c47189 Carica papaya
Cpa.g.sc104.87 Carica papaya
Cpa.g.sc104.88 Carica papaya
Cpa.g.sc109.34 Carica papaya
Cpa.g.sc42.77 Carica papaya
Cre12.g538700 Chlamydomonas reinhardtii
CsaV3_6G040880 Cucumis sativus L.
CSS0000696 Camellia sinensis var. sinensis
CSS0012526 Camellia sinensis var. sinensis
CSS0017430 Camellia sinensis var. sinensis
CSS0033359 Camellia sinensis var. sinensis
DCAR_007577 Daucus carota
DCAR_007764 Daucus carota
DCAR_013417 Daucus carota
DCAR_026338 Daucus carota
Dinv21158 Davidia involucrata
Dinv21159 Davidia involucrata
Dinv30460 Davidia involucrata
Dinv31725 Davidia involucrata
Duzib093G1566 Durio zibethinus
Duzib160G0091 Durio zibethinus
Duzib160G0116 Durio zibethinus
Duzib235G0796 Durio zibethinus
ECA232G4223 Erigeron canadensis
ECA233G2523 Erigeron canadensis
ECA233G6232 Erigeron canadensis
ECA234G2361 Erigeron canadensis
ECA236G1473 Erigeron canadensis
ECA248G1278 Erigeron canadensis
EL10Ac7g16845 Beta vulgaris
Eucgr.A02629 Eucalyptus grandis
Eucgr.F03057 Eucalyptus grandis
FAN02G2142 Fragaria x ananassa
FAN05G0212 Fragaria x ananassa
FAN05G1983 Fragaria x ananassa
FAN05G2352 Fragaria x ananassa
FAN09G2133 Fragaria x ananassa
FAN09G2395 Fragaria x ananassa
FAN14G0204 Fragaria x ananassa
FAN14G5158 Fragaria x ananassa
FvH4_6g19540 Fragaria vesca
FvH4_6g32010 Fragaria vesca
Glyma.02G200700 Glycine max
Glyma.03G198700 Glycine max
Glyma.03G198750 Glycine max
Glyma.07G017600 Glycine max
Glyma.08G202800 Glycine max
Glyma.08G277550 Glycine max
Glyma.10G075900 Glycine max
Glyma.17G182300 Glycine max
Gohir.A04G059752 Gossypium hirsutum
Gohir.A04G059778 Gossypium hirsutum
Gohir.A05G128100 Gossypium hirsutum
Gohir.D04G096400 Gossypium hirsutum
Gohir.D05G132600 Gossypium hirsutum
Gorai.009G136300 Gossypium raimondii
Gorai.009G399100 Gossypium raimondii
GSVIVG01016963001 Vitis vinifera
GSVIVG01016964001 Vitis vinifera
GSVIVG01017037001 Vitis vinifera
GSVIVG01033899001 Vitis vinifera
GSVIVG01034251001 Vitis vinifera
HanXRQChr09g0238341 Helianthus annuus
HanXRQChr10g0313561 Helianthus annuus
HanXRQChr16g0501251 Helianthus annuus
Haze_16333 Corylus avellana
Haze_19657 Corylus avellana
Haze_19658 Corylus avellana
Hma1.2p1_1689F.1_g297660 Hydrangea macrophylla
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla
HPP92_013111 Vanilla planifolia
HPP92_013132 Vanilla planifolia
Hund03895 Selenicereus undatus
Lalb_Chr02g0154741 Lupinus albus
Lalb_Chr06g0172521 Lupinus albus
Lj2A144G24 Lonicera japonica
Lj3g0024380 Lotus japonicus
Lj5g0016358 Lotus japonicus
Lj9C510G21 Lonicera japonica
Lsat_1_v5_gn_3_93241 Lactuca sativa
Lsat_1_v5_gn_4_100740 Lactuca sativa
Lsat_1_v5_gn_5_134580 Lactuca sativa
Lsat_1_v5_gn_6_35600 Lactuca sativa
Manes.04G131766 Manihot esculenta
Manes.08G028900 Manihot esculenta
Manes.11G036100 Manihot esculenta
Mapoly0035s0041 Marchantia polymorpha
MBI04_g27070_MAGBIO Magnolia biondii
MCO14G421 Micromonas commoda
MD02G1238700 Malus domestica
MD09G1207000 Malus domestica
MD12G1031800 Malus domestica
MD14G1032100 Malus domestica
MD17G1187700 Malus domestica
Medtr1g058390 Medicago truncatula
Medtr7g105340 Medicago truncatula
MELO3C024566.2 Cucumis melo
Migut.I00925 Erythranthe guttata
Migut.J00661 Erythranthe guttata
MSTRG.19280 Avicennia marina
MSTRG.22653 Avicennia marina
MSTRG.5869 Avicennia marina
MSTRG.9472 Avicennia marina
Nitab4.5_0000573g0120 Nicotiana tabacum
Nitab4.5_0000983g0070 Nicotiana tabacum
Nitab4.5_0006203g0010 Nicotiana tabacum
Nn6g34803 Nelumbo nucifera
Oeu010762.1 Olea europaea
Oeu017695.2 Olea europaea
Oeu024078.1 Olea europaea
Os08g0482100 Oryza sativa ssp. japonica
Peaxi162Scf00013g01411 Petunia axillaris
Peaxi162Scf00207g01237 Petunia axillaris
PGR004G1279 Punica granatum
PGR142G1576 Punica granatum
PGSC0003DMG400016500 Solanum tuberosum
Phvul.007G230450 Phaseolus vulgaris
Phvul.010G146900 Phaseolus vulgaris
Potri.001G187100 Populus trichocarpa
Potri.006G208300 Populus trichocarpa
Potri.016G074900 Populus trichocarpa
Pp3c14_11120 Physcomitrium patens
Pp3c19_18600 Physcomitrium patens
Pp3c22_13150 Physcomitrium patens
PRCOL_00001336 Prasinoderma coloniale
Prupe.3G063100 Prunus persica
Prupe.7G100800 Prunus persica
Psat3g031120 Pisum sativum
Psat6g080080 Pisum sativum
Psat6g080120 Pisum sativum
PSO339G0972 Papaver somniferum
PSO801G0394 Papaver somniferum
QL07p038072 Quercus lobata
RcHm_v2.0_Chr2g0139611 Rosa chinensis
RcHm_v2.0_Chr3g0474881 Rosa chinensis
Rhsim01G0258700 Rhododendron simsii
Sabra01G0153200 Salix brachista
Sabra06G0160200 Salix brachista
Sabra16G0077100 Salix brachista
Sabra16G0077200 Salix brachista
Sabra16G0077500 Salix brachista
Sabra16G0080300 Salix brachista
SalBow2G1930 Salvia bowleyana
SalBow7G2403 Salvia bowleyana
Sc02g0000460 Simmondsia chinensis
Sc02g0000470 Simmondsia chinensis
Sed0005359 Sechium edule
Sed0021820 Sechium edule
SEGI_16826 Sequoiadendron giganteum
SEGI_19233 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06691 Striga asiatica
SMO364G0473 Selaginella moellendorffii
Solyc06g066550.3 Solanum lycopersicum
Solyc09g010280.3 Solanum lycopersicum
Sopen06g024820 Solanum pennellii
Sopen09g004980 Solanum pennellii
Sp3g09800 Schrenkiella parvula
Sp6g36660 Schrenkiella parvula
TAR369G0677 Trochodendron aralioides
TAR623G1676 Trochodendron aralioides
TAR624G0773 Trochodendron aralioides
TAR624G0959 Trochodendron aralioides
THA.LOC104816603 Tarenaya hassleriana
Thecc.05G096300 Theobroma cacao
Thecc.06G096100 Theobroma cacao
Thhalv10012627m.g Eutrema salsugineum
Thhalv10020029m.g Eutrema salsugineum
TPR.G23311 Trifolium pratense
TPR.G23364 Trifolium pratense
TPR.G40320 Trifolium pratense
TPR.G40540 Trifolium pratense
TWI12G1196 Tripterygium wilfordii
TWI74G1463 Tripterygium wilfordii
TWI77G0235 Tripterygium wilfordii
unitig_14.g30622 Utricularia gibba
unitig_8.g4208 Utricularia gibba
vmacro14777 Vaccinium macrocarpon
VMungo0331G0629 Vigna mungo
VMungo0720G2392 Vigna mungo
Zm00001eb033410 Zea mays

User provided reference genes

Program Settings