Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12290 Brassica napus
A03p19300 Brassica napus
A04p16420 Brassica napus
A04p26560 Brassica napus
A05p10890 Brassica napus
Aa31LG10G6540 Aethionema arabicum
Aa31LG6G2940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.737 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.543 Anthoceros agrestis
Actinidia13458 Actinidia chinensis
Actinidia31371 Actinidia chinensis
Ah.09g232310 Amaranthus hybridus
Ah.14g086110 Amaranthus hybridus
AL4G30760 Arabidopsis lyrata
AL7G33280 Arabidopsis lyrata
Aqoxy1G01486 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.407LUN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7AR4IQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8UG7AL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J0LYJB Arachis hypogaea
AT2G34770 Arabidopsis thaliana
AT4G20870 Arabidopsis thaliana
ATR0763G141 Amborella trichopoda
Atru.chr10.772 Acer truncatum
Atru.chr10.774 Acer truncatum
AUR62026901 Chenopodium quinoa
AUR62040887 Chenopodium quinoa
AUR62043086 Chenopodium quinoa
BcaB02g09509 Brassica carinata
BcaB02g09510 Brassica carinata
BcaB03g16276 Brassica carinata
BcaB03g16285 Brassica carinata
BcaB06g27788 Brassica carinata
BcaB06g28797 Brassica carinata
BcaC01g05763 Brassica carinata
BcaC01g05855 Brassica carinata
BcaC02g08339 Brassica carinata
BcaC02g08762 Brassica carinata
BcaC02g11556 Brassica carinata
BcaC02g11557 Brassica carinata
BcaC02g11558 Brassica carinata
BcaC09g51297 Brassica carinata
BcaNung04142 Brassica carinata
BolC1t01422H Brassica oleracea
BolC3t14645H Brassica oleracea
BolC4t22988H Brassica oleracea
BolC4t27870H Brassica oleracea
BraA01t01173Z Brassica rapa
BraA03t11184Z Brassica rapa
BraA04t18160Z Brassica rapa
C01p14700 Brassica napus
C03p22490 Brassica napus
C04p50940 Brassica napus
C04p63980 Brassica napus
CAN.G79.15 Capsicum annuum
CANSAT35G1523 Cannabis sativa
CANSAT35G1801 Cannabis sativa
CARHR128930 Cardamine hirsuta
CARHR227420 Cardamine hirsuta
Carub.0004s1645 Capsella rubella
Carub.0007s2056 Capsella rubella
Ca_00870_v3 Cicer arietinum L.
Ca_18295_v3 Cicer arietinum L.
CBR_g34020 Chara braunii
Cc09_g07510 Coffea canephora
Cc09_g07560 Coffea canephora
CDE01G0276 Ceratophyllum demersum
CDE02G2412 Ceratophyllum demersum
CDE05G2102 Ceratophyllum demersum
Ciclev10016492m.g Citrus clementina
Ciclev10016504m.g Citrus clementina
CiPaw.09G142900 Carya illinoinensis
ClCG01G025290 Citrullus lanatus
ClCG01G025300 Citrullus lanatus
COL.COLO4_26844 Corchorus olitorius
Cpa.g.sc166.40 Carica papaya
Cpa.g.sc166.47 Carica papaya
Cre12.g496650 Chlamydomonas reinhardtii
CsaV3_6G052510 Cucumis sativus L.
CsaV3_6G052520 Cucumis sativus L.
CSS0017272 Camellia sinensis var. sinensis
CSS0033854 Camellia sinensis var. sinensis
CSS0033872 Camellia sinensis var. sinensis
DCAR_003835 Daucus carota
DCAR_007831 Daucus carota
Dinv06925 Davidia involucrata
Dinv14841 Davidia involucrata
Duzib160G0072 Durio zibethinus
Duzib192G0706 Durio zibethinus
Duzib192G0735 Durio zibethinus
Duzib235G0776 Durio zibethinus
Duzib235G1236 Durio zibethinus
ECA236G3659 Erigeron canadensis
EL10Ac8g19526 Beta vulgaris
EL10Ac8g19556 Beta vulgaris
Eucgr.D01613 Eucalyptus grandis
FAN11G0190 Fragaria x ananassa
FAN11G2743 Fragaria x ananassa
FAN11G2755 Fragaria x ananassa
FAN11G3531 Fragaria x ananassa
FAN16G1241 Fragaria x ananassa
FAN16G2877 Fragaria x ananassa
FAN16G3360 Fragaria x ananassa
FAN21G2201 Fragaria x ananassa
FAN21G3614 Fragaria x ananassa
FAN21G3636 Fragaria x ananassa
FAN25G1150 Fragaria x ananassa
FAN25G1534 Fragaria x ananassa
FAN25G3733 Fragaria x ananassa
FvH4_3g10720 Fragaria vesca
FvH4_3g10760 Fragaria vesca
FvH4_3g10770 Fragaria vesca
FvH4_3g10780 Fragaria vesca
Glyma.05G126000 Glycine max
Glyma.08G081000 Glycine max
Glyma.09G026800 Glycine max
Glyma.15G132500 Glycine max
Gohir.A02G089900 Gossypium hirsutum
Gohir.A06G119800 Gossypium hirsutum
Gohir.A06G182000 Gossypium hirsutum
Gohir.D02G107000 Gossypium hirsutum
Gohir.D06G124700 Gossypium hirsutum
Gorai.005G121600 Gossypium raimondii
Gorai.010G144400 Gossypium raimondii
Gorai.010G221600 Gossypium raimondii
GSVIVG01021712001 Vitis vinifera
GSVIVG01021714001 Vitis vinifera
HanXRQChr15g0480991 Helianthus annuus
Haze_05899 Corylus avellana
Hma1.2p1_0083F.1_g042900 Hydrangea macrophylla
Hma1.2p1_0721F.1_g208660 Hydrangea macrophylla
HPP92_000944 Vanilla planifolia
HPP92_018663 Vanilla planifolia
HPP92_018681 Vanilla planifolia
Hund17673 Selenicereus undatus
Lalb_Chr07g0189041 Lupinus albus
Lalb_Chr12g0208771 Lupinus albus
Lalb_Chr13g0291461 Lupinus albus
Lalb_Chr13g0291471 Lupinus albus
Lalb_Chr20g0120161 Lupinus albus
Lj1A1160G59 Lonicera japonica
Lj2A331T126 Lonicera japonica
Lj2A332T92 Lonicera japonica
Lj2C331T11 Lonicera japonica
Lj2C332T6 Lonicera japonica
Lj4g0024659 Lotus japonicus
Lj6g0010258 Lotus japonicus
Lsat_1_v5_gn_7_31501 Lactuca sativa
Manes.06G058800 Manihot esculenta
Manes.14G124800 Manihot esculenta
Mapoly0028s0041 Marchantia polymorpha
Mapoly0070s0052 Marchantia polymorpha
Mapoly0086s0063 Marchantia polymorpha
MBI02_g21156_MAGBIO Magnolia biondii
MBI18_g10014_MAGBIO Magnolia biondii
MCO12G268 Micromonas commoda
MD05G1268900 Malus domestica
MD05G1269000 Malus domestica
MD10G1247600 Malus domestica
MD10G1247800 Malus domestica
Medtr2g031370 Medicago truncatula
Medtr4g094522 Medicago truncatula
Medtr4g094525 Medicago truncatula
MELO3C007058.2 Cucumis melo
MELO3C007059.2 Cucumis melo
Migut.H01314 Erythranthe guttata
Migut.M01908 Erythranthe guttata
Migut.M01909 Erythranthe guttata
MSTRG.16300 Avicennia marina
MSTRG.7547 Avicennia marina
Nitab4.5_0000076g0190 Nicotiana tabacum
Nitab4.5_0000076g0200 Nicotiana tabacum
Nitab4.5_0001225g0230 Nicotiana tabacum
Nitab4.5_0001583g0190 Nicotiana tabacum
Nitab4.5_0002094g0040 Nicotiana tabacum
Nitab4.5_0002094g0050 Nicotiana tabacum
Nn7g37844 Nelumbo nucifera
Oeu015149.1 Olea europaea
Oeu031151.1 Olea europaea
Oeu040074.1 Olea europaea
Oeu041121.1 Olea europaea
Oeu052644.1 Olea europaea
Oeu057800.1 Olea europaea
Os03g0780800 Oryza sativa ssp. japonica
Os12g0628400 Oryza sativa ssp. japonica
Peaxi162Scf00395g00062 Petunia axillaris
Peaxi162Scf00395g00069 Petunia axillaris
Peaxi162Scf00395g00713 Petunia axillaris
PGR042G0555 Punica granatum
PGR083G2488 Punica granatum
PGSC0003DMG400007595 Solanum tuberosum
PGSC0003DMG400007596 Solanum tuberosum
PGSC0003DMG400021113 Solanum tuberosum
Phvul.002G198700 Phaseolus vulgaris
Phvul.006G125900 Phaseolus vulgaris
Potri.001G463800 Populus trichocarpa
Potri.011G162000 Populus trichocarpa
Pp3c12_5420 Physcomitrium patens
Pp3c14_25720 Physcomitrium patens
Pp3c17_17970 Physcomitrium patens
Pp3c3_15570 Physcomitrium patens
Pp3c4_15680 Physcomitrium patens
Pp3c6_10550 Physcomitrium patens
PRCOL_00006921 Prasinoderma coloniale
Prupe.4G095700 Prunus persica
Psat1g165760 Pisum sativum
Psat7g092280 Pisum sativum
PSO541G4768 Papaver somniferum
PSO675G0022 Papaver somniferum
QL05p063655 Quercus lobata
RcHm_v2.0_Chr5g0017441 Rosa chinensis
RcHm_v2.0_Chr5g0017481 Rosa chinensis
RcHm_v2.0_Chr5g0017491 Rosa chinensis
RcHm_v2.0_Chr5g0017501 Rosa chinensis
Rhsim02G0164200 Rhododendron simsii
Rhsim02G0164300 Rhododendron simsii
Rhsim13G0122900 Rhododendron simsii
Sabra11G0141600 Salix brachista
Sabra16G0313500 Salix brachista
Sabra16G0315000 Salix brachista
SalBow7G2941 Salvia bowleyana
SalBow8G1825 Salvia bowleyana
SalBow8G4252 Salvia bowleyana
Sc17g0004460 Simmondsia chinensis
Sc24g0002510 Simmondsia chinensis
Sed0009354 Sechium edule
Sed0010845 Sechium edule
Sed0025219 Sechium edule
SEGI_39872 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00276 Striga asiatica
SHI24810 Sapria himalayana
SMO174G0050 Selaginella moellendorffii
Solyc02g022890.3 Solanum lycopersicum
Solyc02g022910.4 Solanum lycopersicum
Solyc02g070050.3 Solanum lycopersicum
Sopen02g006510 Solanum pennellii
Sopen02g006520 Solanum pennellii
Sopen02g019210 Solanum pennellii
Sp4g17060 Schrenkiella parvula
Sp7g18960 Schrenkiella parvula
TAR627G0943 Trochodendron aralioides
TAR716G0001 Trochodendron aralioides
THA.LOC104798589 Tarenaya hassleriana
THA.LOC104812935 Tarenaya hassleriana
THA.LOC104814345 Tarenaya hassleriana
Thecc.06G003100 Theobroma cacao
Thecc.06G015300 Theobroma cacao
Thhalv10017638m.g Eutrema salsugineum
Thhalv10026120m.g Eutrema salsugineum
TPR.G22275 Trifolium pratense
TPR.G22780 Trifolium pratense
TPR.G30374 Trifolium pratense
TWI15G0231 Tripterygium wilfordii
TWI15G0846 Tripterygium wilfordii
unitig_32.g10875 Utricularia gibba
unitig_748.g7374 Utricularia gibba
unitig_748.g8281 Utricularia gibba
unitig_92.g28175 Utricularia gibba
vmacro03362 Vaccinium macrocarpon
vmacro03363 Vaccinium macrocarpon
VMungo0251G1498 Vigna mungo
VMungo0540G2433 Vigna mungo
Zm00001eb032500 Zea mays
Zm00001eb059630 Zea mays

User provided reference genes

Program Settings