Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p22160 Brassica napus
A10p20090 Brassica napus
Aa31LG1G18950 Aethionema arabicum
Aa31LG4G13700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1129 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1741 Anthoceros agrestis
Actinidia16317 Actinidia chinensis
Actinidia24259 Actinidia chinensis
Ah.06g193680 Amaranthus hybridus
AL5G22190 Arabidopsis lyrata
AL6G31130 Arabidopsis lyrata
Aqoxy1G00635 Aquilegia oxysepala
Aqoxy3G01726 Aquilegia oxysepala
Aqoxy7G03862 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1RS4AR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.24VX5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.62TI7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7IM9YU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.89IDD9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IW7M0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PFP40K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VAJP8X Arachis hypogaea
AT3G44160 Arabidopsis thaliana
AT3G48620 Arabidopsis thaliana
AT5G19620 Arabidopsis thaliana
ATR0605G270 Amborella trichopoda
Atru.chr3.2604 Acer truncatum
Atru.chr3.3097 Acer truncatum
AUR62000100 Chenopodium quinoa
AUR62001564 Chenopodium quinoa
AUR62019274 Chenopodium quinoa
AUR62020219 Chenopodium quinoa
BcaB01g01195 Brassica carinata
BcaC01g02074 Brassica carinata
BcaC04g24225 Brassica carinata
BcaC04g24226 Brassica carinata
BolC3t19140H Brassica oleracea
BolC9t58521H Brassica oleracea
BraA06t25306Z Brassica rapa
BraA10t44083Z Brassica rapa
C03p68820 Brassica napus
C09p56560 Brassica napus
CAN.G288.3 Capsicum annuum
CAN.G742.36 Capsicum annuum
CANSAT54G1236 Cannabis sativa
CANSAT54G1339 Cannabis sativa
CARHR152940 Cardamine hirsuta
CARHR193290 Cardamine hirsuta
Carub.0005s0988 Capsella rubella
Carub.0006s1797 Capsella rubella
Ca_01289_v3 Cicer arietinum L.
Ca_01628_v3 Cicer arietinum L.
CBR_g49553 Chara braunii
Cc01_g07780 Coffea canephora
Cc07_g19440 Coffea canephora
CDE05G0083 Ceratophyllum demersum
CDE05G2349 Ceratophyllum demersum
CDE06G2648 Ceratophyllum demersum
Cfa009745 Carpinus fangiana
Cfa010184 Carpinus fangiana
Cfa010185 Carpinus fangiana
Ciclev10014959m.g Citrus clementina
Ciclev10028708m.g Citrus clementina
Ciclev10030987m.g Citrus clementina
CiPaw.13G128500 Carya illinoinensis
CiPaw.13G163000 Carya illinoinensis
ClCG02G023340 Citrullus lanatus
COL.COLO4_24854 Corchorus olitorius
COL.COLO4_25402 Corchorus olitorius
COL.COLO4_25403 Corchorus olitorius
Cpa.g.sc103.20 Carica papaya
Cpa.g.sc84.73 Carica papaya
Cre09.g388097 Chlamydomonas reinhardtii
CsaV3_4G024160 Cucumis sativus L.
CSS0021823 Camellia sinensis var. sinensis
CSS0039826 Camellia sinensis var. sinensis
CSS0043527 Camellia sinensis var. sinensis
DCAR_012247 Daucus carota
DCAR_018962 Daucus carota
Dinv22194 Davidia involucrata
Dinv33545 Davidia involucrata
Duzib150G1640 Durio zibethinus
Duzib168G0193 Durio zibethinus
Duzib170G0683 Durio zibethinus
Duzib170G0706 Durio zibethinus
ECA233G6009 Erigeron canadensis
ECA238G0364 Erigeron canadensis
EL10Ac1g01238 Beta vulgaris
EL10Ac4g10295 Beta vulgaris
EL10Ac7g16284 Beta vulgaris
Eucgr.J00580 Eucalyptus grandis
Eucgr.J00787 Eucalyptus grandis
FAN11G0460 Fragaria x ananassa
FAN11G1818 Fragaria x ananassa
FAN16G0653 Fragaria x ananassa
FAN17G2435 Fragaria x ananassa
FAN21G0039 Fragaria x ananassa
FAN21G0044 Fragaria x ananassa
FAN25G0456 Fragaria x ananassa
FAN25G3029 Fragaria x ananassa
FvH4_3g26270 Fragaria vesca
FvH4_3g43030 Fragaria vesca
Glyma.10G034900 Glycine max
Glyma.12G189700 Glycine max
Glyma.13G121201 Glycine max
Glyma.13G312000 Glycine max
Glyma.13G340700 Glycine max
Glyma.15G033700 Glycine max
Gohir.A05G068400 Gossypium hirsutum
Gohir.A05G314316 Gossypium hirsutum
Gohir.A06G113400 Gossypium hirsutum
Gohir.A07G054600 Gossypium hirsutum
Gohir.A07G164700 Gossypium hirsutum
Gohir.A08G013300 Gossypium hirsutum
Gohir.A08G161200 Gossypium hirsutum
Gohir.A09G100400 Gossypium hirsutum
Gohir.D05G071400 Gossypium hirsutum
Gohir.D08G023700 Gossypium hirsutum
Gohir.D09G099800 Gossypium hirsutum
Gorai.004G019000 Gossypium raimondii
Gorai.006G116800 Gossypium raimondii
Gorai.009G072400 Gossypium raimondii
GSVIVG01025300001 Vitis vinifera
GSVIVG01037593001 Vitis vinifera
HanXRQChr01g0016171 Helianthus annuus
HanXRQChr03g0082131 Helianthus annuus
HanXRQChr04g0114751 Helianthus annuus
HanXRQChr14g0431721 Helianthus annuus
HanXRQChr17g0534151 Helianthus annuus
Haze_23104 Corylus avellana
Haze_23108 Corylus avellana
Haze_23574 Corylus avellana
Hma1.2p1_0027F.1_g017160 Hydrangea macrophylla
HPP92_006144 Vanilla planifolia
HPP92_017671 Vanilla planifolia
HPP92_017672 Vanilla planifolia
HPP92_028932 Vanilla planifolia
Hund07528 Selenicereus undatus
Hund07529 Selenicereus undatus
Hund20954 Selenicereus undatus
Hund20955 Selenicereus undatus
Lalb_Chr06g0162501 Lupinus albus
Lalb_Chr14g0372161 Lupinus albus
Lalb_Chr22g0352351 Lupinus albus
Lalb_Chr24g0393331 Lupinus albus
Lj1A347T9 Lonicera japonica
Lj2A953T36 Lonicera japonica
Lj3g0027520 Lotus japonicus
Lj3g0028100 Lotus japonicus
Lj5g0017173 Lotus japonicus
Lsat_1_v5_gn_2_35420 Lactuca sativa
Lsat_1_v5_gn_6_47261 Lactuca sativa
Manes.04G062700 Manihot esculenta
Manes.14G001500 Manihot esculenta
Mapoly0001s0065 Marchantia polymorpha
MBI11_g15177_MAGBIO Magnolia biondii
MBI19_g25424_MAGBIO Magnolia biondii
MD03G1024500 Malus domestica
MD03G1159000 Malus domestica
MD11G1029600 Malus domestica
MD11G1174200 Malus domestica
Medtr1g070230 Medicago truncatula
Medtr2g087590 Medicago truncatula
Medtr2g087620 Medicago truncatula
Medtr2g098110 Medicago truncatula
MELO3C014605.2 Cucumis melo
Migut.D00584 Erythranthe guttata
Migut.N02441 Erythranthe guttata
MSTRG.17676 Avicennia marina
Nitab4.5_0000015g0010 Nicotiana tabacum
Nitab4.5_0000492g0100 Nicotiana tabacum
Nitab4.5_0002026g0040 Nicotiana tabacum
Nitab4.5_0004762g0040 Nicotiana tabacum
Nn2g14351 Nelumbo nucifera
Nn2g15442 Nelumbo nucifera
Nn2g15443 Nelumbo nucifera
Nn6g34633 Nelumbo nucifera
Nn7g36161 Nelumbo nucifera
Oeu043299.1 Olea europaea
Oeu048828.1 Olea europaea
Oeu054377.1 Olea europaea
Os02g0196300 Oryza sativa ssp. japonica
Os05g0510200 Oryza sativa ssp. japonica
Peaxi162Scf00029g02913 Petunia axillaris
Peaxi162Scf00429g00124 Petunia axillaris
PGR119G1481 Punica granatum
PGR119G1910 Punica granatum
PGSC0003DMG400002985 Solanum tuberosum
PGSC0003DMG400008142 Solanum tuberosum
Phvul.005G118400 Phaseolus vulgaris
Phvul.007G195200 Phaseolus vulgaris
Phvul.L010043 Phaseolus vulgaris
Potri.001G019000 Populus trichocarpa
Potri.001G215500 Populus trichocarpa
Potri.003G204900 Populus trichocarpa
Potri.009G017100 Populus trichocarpa
Pp3c2_17870 Physcomitrium patens
Pp3c3_3200 Physcomitrium patens
PRCOL_00003853 Prasinoderma coloniale
Prupe.6G023900 Prunus persica
Prupe.6G146000 Prunus persica
Psat5g262320 Pisum sativum
Psat5g287000 Pisum sativum
PSO339G1449 Papaver somniferum
PSO384G3146 Papaver somniferum
PSO675G6923 Papaver somniferum
PSO675G8897 Papaver somniferum
QL01p005206 Quercus lobata
QL01p019375 Quercus lobata
QL01p019379 Quercus lobata
RcHm_v2.0_Chr5g0048701 Rosa chinensis
RcHm_v2.0_Chr5g0077091 Rosa chinensis
Rhsim13G0197200 Rhododendron simsii
Rhsim13G0223300 Rhododendron simsii
Sabra03G0151500 Salix brachista
Sabra16G0127900 Salix brachista
SalBow3G2470 Salvia bowleyana
SalBow8G4903 Salvia bowleyana
Sc09g0000580 Simmondsia chinensis
Sc12g0000330 Simmondsia chinensis
Sed0019540 Sechium edule
SEGI_03010 Sequoiadendron giganteum
SEGI_21098 Sequoiadendron giganteum
SEGI_36184 Sequoiadendron giganteum
SEGI_41042 Sequoiadendron giganteum
SGA_v2.0_scaffold247G44859 Striga asiatica
SGA_v2.0_scaffold268G46207 Striga asiatica
SMO004G0004 Selaginella moellendorffii
SMO119G0491 Selaginella moellendorffii
SMO351G0337 Selaginella moellendorffii
SMO351G0403 Selaginella moellendorffii
Solyc10g079290.2 Solanum lycopersicum
Solyc11g062070.3 Solanum lycopersicum
Solyc11g071890.3 Solanum lycopersicum
Sopen10g029940 Solanum pennellii
Sopen11g024050 Solanum pennellii
Sopen11g029560 Solanum pennellii
Sp5g17200 Schrenkiella parvula
Sp6g24770 Schrenkiella parvula
TAR369G0011 Trochodendron aralioides
TAR369G0083 Trochodendron aralioides
TAR369G1112 Trochodendron aralioides
TAR376G0263 Trochodendron aralioides
TAR623G0184 Trochodendron aralioides
TAR623G1346 Trochodendron aralioides
THA.LOC104799090 Tarenaya hassleriana
THA.LOC104815080 Tarenaya hassleriana
Thecc.09G228700 Theobroma cacao
Thecc.09G270800 Theobroma cacao
Thhalv10010440m.g Eutrema salsugineum
Thhalv10012770m.g Eutrema salsugineum
TPR.G27238 Trifolium pratense
TPR.G4239 Trifolium pratense
TPR.G6861 Trifolium pratense
unitig_22.g6163 Utricularia gibba
vmacro03950 Vaccinium macrocarpon
vmacro04196 Vaccinium macrocarpon
vmacro04197 Vaccinium macrocarpon
vmacro21166 Vaccinium macrocarpon
VMungo0720G1969 Vigna mungo
VMungo1080G0110 Vigna mungo
VMungo1080G1486 Vigna mungo
Zm00001eb205950 Zea mays
Zm00001eb236320 Zea mays
Zm00001eb292440 Zea mays

User provided reference genes

Program Settings