Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p23430 Brassica napus
A09p04400 Brassica napus
Aa31LG5G6110 Aethionema arabicum
Aa31sc757G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.252 Anthoceros agrestis
Actinidia18406 Actinidia chinensis
Actinidia23805 Actinidia chinensis
Actinidia34528 Actinidia chinensis
Ah.02g111000 Amaranthus hybridus
Ah.11g050750 Amaranthus hybridus
AL4G25620 Arabidopsis lyrata
AL8G21130 Arabidopsis lyrata
Aqoxy1G01713 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0B2YB3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HG067M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M15CPW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZBQ80L Arachis hypogaea
AT2G30720 Arabidopsis thaliana
AT5G48370 Arabidopsis thaliana
ATR0743G172 Amborella trichopoda
Atru.chr3.1947 Acer truncatum
Atru.chr6.3501 Acer truncatum
AUR62002426 Chenopodium quinoa
AUR62002427 Chenopodium quinoa
AUR62008057 Chenopodium quinoa
AUR62023764 Chenopodium quinoa
AUR62028633 Chenopodium quinoa
BcaB04g19571 Brassica carinata
BcaC04g23781 Brassica carinata
BolC4t27480H Brassica oleracea
BolC9t53399H Brassica oleracea
BraA04t17870Z Brassica rapa
BraA09t36077Z Brassica rapa
C04p59730 Brassica napus
C09p04710 Brassica napus
CAN.G253.9 Capsicum annuum
CAN.G566.22 Capsicum annuum
CANSAT25G2165 Cannabis sativa
CANSAT25G3830 Cannabis sativa
CANSAT56G3638 Cannabis sativa
CARHR124220 Cardamine hirsuta
CARHR183840 Cardamine hirsuta
Carub.0004s1190 Capsella rubella
Carub.0008s0794 Capsella rubella
Ca_08037_v3 Cicer arietinum L.
Ca_18620_v3 Cicer arietinum L.
Ca_18626_v3 Cicer arietinum L.
CBR_g24043 Chara braunii
Cc01_g15800 Coffea canephora
Cc03_g15050 Coffea canephora
CDE02G3550 Ceratophyllum demersum
CDE09G1282 Ceratophyllum demersum
Cfa010608 Carpinus fangiana
Cfa022323 Carpinus fangiana
Cfa022631 Carpinus fangiana
Ciclev10015268m.g Citrus clementina
Ciclev10019655m.g Citrus clementina
CiPaw.01G199000 Carya illinoinensis
CiPaw.13G056900 Carya illinoinensis
CiPaw.13G057000 Carya illinoinensis
ClCG09G008000 Citrullus lanatus
COL.COLO4_24812 Corchorus olitorius
COL.COLO4_34290 Corchorus olitorius
Cpa.g.sc8.31 Carica papaya
Cre01.g037350 Chlamydomonas reinhardtii
Cre16.g683350 Chlamydomonas reinhardtii
Cre16.g685800 Chlamydomonas reinhardtii
CsaV3_7G027080 Cucumis sativus L.
CSS0008807 Camellia sinensis var. sinensis
CSS0014562 Camellia sinensis var. sinensis
CSS0016113 Camellia sinensis var. sinensis
DCAR_000182 Daucus carota
DCAR_005445 Daucus carota
DCAR_012707 Daucus carota
Dinv07632 Davidia involucrata
Dinv18306 Davidia involucrata
Dinv40865 Davidia involucrata
Duzib133G0382 Durio zibethinus
Duzib138G1009 Durio zibethinus
Duzib151G1150 Durio zibethinus
ECA238G0835 Erigeron canadensis
ECA248G2967 Erigeron canadensis
EL10Ac3g06121 Beta vulgaris
EL10Ac5g10579 Beta vulgaris
Eucgr.G01592 Eucalyptus grandis
Eucgr.G01596 Eucalyptus grandis
Eucgr.H00690 Eucalyptus grandis
Eucgr.H01854 Eucalyptus grandis
Eucgr.H01859 Eucalyptus grandis
Eucgr.H01860 Eucalyptus grandis
Eucgr.L00021 Eucalyptus grandis
Eucgr.L00029 Eucalyptus grandis
Eucgr.L00032 Eucalyptus grandis
Eucgr.L00038 Eucalyptus grandis
Eucgr.L00044 Eucalyptus grandis
Eucgr.L01023 Eucalyptus grandis
FAN12G3388 Fragaria x ananassa
FAN14G0413 Fragaria x ananassa
FAN14G3488 Fragaria x ananassa
FAN14G4312 Fragaria x ananassa
FAN15G1490 Fragaria x ananassa
FAN23G1064 Fragaria x ananassa
FAN24G2975 Fragaria x ananassa
FAN25G2449 Fragaria x ananassa
FAN26G0485 Fragaria x ananassa
FAN27G1554 Fragaria x ananassa
FAN28G2796 Fragaria x ananassa
FvH4_1g00450 Fragaria vesca
FvH4_2g17370 Fragaria vesca
FvH4_6g02712 Fragaria vesca
FvH4_6g02780 Fragaria vesca
Glyma.02G139600 Glycine max
Glyma.07G205900 Glycine max
Glyma.09G246100 Glycine max
Glyma.18G246900 Glycine max
Gohir.A07G195200 Gossypium hirsutum
Gohir.A10G146400 Gossypium hirsutum
Gohir.A11G144200 Gossypium hirsutum
Gohir.D07G201600 Gossypium hirsutum
Gohir.D10G120600 Gossypium hirsutum
Gohir.D11G150600 Gossypium hirsutum
Gohir.D11G150760 Gossypium hirsutum
Gorai.001G226300 Gossypium raimondii
Gorai.007G161500 Gossypium raimondii
Gorai.011G132500 Gossypium raimondii
GSVIVG01002016001 Vitis vinifera
GSVIVG01004130001 Vitis vinifera
GSVIVG01004133001 Vitis vinifera
GSVIVG01015951001 Vitis vinifera
GSVIVG01038195001 Vitis vinifera
HanXRQChr01g0014181 Helianthus annuus
HanXRQChr10g0285931 Helianthus annuus
Haze_03533 Corylus avellana
Haze_03538 Corylus avellana
Haze_11171 Corylus avellana
Haze_11176 Corylus avellana
Hma1.2p1_1289F.1_g273330 Hydrangea macrophylla
Hma1.2p1_1629F.1_g294520 Hydrangea macrophylla
Hma1.2p1_1701F.1_g298230 Hydrangea macrophylla
Hma1.2p1_1701F.1_g298250 Hydrangea macrophylla
Hma1.2p1_1725F.1_g299430 Hydrangea macrophylla
HPP92_011682 Vanilla planifolia
HPP92_011688 Vanilla planifolia
HPP92_011717 Vanilla planifolia
Hund09489 Selenicereus undatus
Hund22547 Selenicereus undatus
Lalb_Chr03g0040581 Lupinus albus
Lalb_Chr05g0218791 Lupinus albus
Lj1g0021459 Lotus japonicus
Lj2A1110G52 Lonicera japonica
Lj4g0020278 Lotus japonicus
Lj6C269G8 Lonicera japonica
Lsat_1_v5_gn_2_40220 Lactuca sativa
Lsat_1_v5_gn_5_176401 Lactuca sativa
Manes.01G017700 Manihot esculenta
Manes.12G054500 Manihot esculenta
Mapoly0115s0031 Marchantia polymorpha
MCO09G515 Micromonas commoda
MD02G1003700 Malus domestica
MD05G1152600 Malus domestica
MD10G1147100 Malus domestica
MD15G1147000 Malus domestica
Medtr4g087900 Medicago truncatula
Medtr7g080930 Medicago truncatula
MELO3C012718.2 Cucumis melo
Migut.D00768 Erythranthe guttata
Migut.G00835 Erythranthe guttata
MSTRG.12739 Avicennia marina
MSTRG.18508 Avicennia marina
MSTRG.4310 Avicennia marina
Nitab4.5_0000474g0030 Nicotiana tabacum
Nitab4.5_0001177g0090 Nicotiana tabacum
Nitab4.5_0001704g0040 Nicotiana tabacum
Nitab4.5_0001704g0060 Nicotiana tabacum
Nitab4.5_0001980g0070 Nicotiana tabacum
Nitab4.5_0002660g0020 Nicotiana tabacum
Nitab4.5_0005165g0020 Nicotiana tabacum
Nn1g09517 Nelumbo nucifera
Nn7g37493 Nelumbo nucifera
Oeu011765.1 Olea europaea
Oeu011818.1 Olea europaea
Oeu013518.1 Olea europaea
Oeu015706.1 Olea europaea
Os09g0517700 Oryza sativa ssp. japonica
Peaxi162Scf00169g00512 Petunia axillaris
Peaxi162Scf00235g00011 Petunia axillaris
Peaxi162Scf00483g00029 Petunia axillaris
PGR042G1407 Punica granatum
PGR083G2489 Punica granatum
PGSC0003DMG400005371 Solanum tuberosum
PGSC0003DMG400029348 Solanum tuberosum
Phvul.003G058900 Phaseolus vulgaris
Phvul.008G050200 Phaseolus vulgaris
Potri.002G240100 Populus trichocarpa
Potri.014G174800 Populus trichocarpa
Potri.017G009800 Populus trichocarpa
Pp3c24_5990 Physcomitrium patens
Pp3c25_15280 Physcomitrium patens
Pp3c5_28520 Physcomitrium patens
PRCOL_00003412 Prasinoderma coloniale
Prupe.7G267600 Prunus persica
Prupe.8G185500 Prunus persica
Psat3g100640 Pisum sativum
Psat7g119080 Pisum sativum
PSO210G2654 Papaver somniferum
PSO339G5595 Papaver somniferum
PSO801G0193 Papaver somniferum
PSO832G2683 Papaver somniferum
QL09p045558 Quercus lobata
QL09p045614 Quercus lobata
QL10p058605 Quercus lobata
QL10p059268 Quercus lobata
RcHm_v2.0_Chr2g0084961 Rosa chinensis
RcHm_v2.0_Chr3g0496731 Rosa chinensis
RcHm_v2.0_Chr6g0282001 Rosa chinensis
RcHm_v2.0_Chr6g0282011 Rosa chinensis
RcHm_v2.0_Chr6g0282021 Rosa chinensis
RcHm_v2.0_Chr6g0282071 Rosa chinensis
Rhsim01G0247000 Rhododendron simsii
Rhsim01G0247100 Rhododendron simsii
Rhsim09G0007600 Rhododendron simsii
Sabra02G0182900 Salix brachista
Sabra14G0133900 Salix brachista
Sabra17G0009200 Salix brachista
SalBow2G3229 Salvia bowleyana
SalBow3G2759 Salvia bowleyana
Sc02g0003650 Simmondsia chinensis
Sc17g0001520 Simmondsia chinensis
Sed0018281 Sechium edule
SEGI_01235 Sequoiadendron giganteum
SGA_v2.0_scaffold158G37524 Striga asiatica
SGA_v2.0_scaffold37G14929 Striga asiatica
SMO141G0025 Selaginella moellendorffii
SMO159G0005 Selaginella moellendorffii
SMO364G0435 Selaginella moellendorffii
Solyc09g042750.3 Solanum lycopersicum
Solyc12g019490.2 Solanum lycopersicum
Solyc12g096860.3 Solanum lycopersicum
Sopen09g015740 Solanum pennellii
Sopen12g009780 Solanum pennellii
Sopen12g032690 Solanum pennellii
Sp2g18720 Schrenkiella parvula
Sp4g13240 Schrenkiella parvula
TAR362G0608 Trochodendron aralioides
TAR633G0356 Trochodendron aralioides
THA.LOC104822458 Tarenaya hassleriana
THA.LOC104826251 Tarenaya hassleriana
Thecc.01G206100 Theobroma cacao
Thecc.04G161900 Theobroma cacao
Thhalv10004228m.g Eutrema salsugineum
Thhalv10016640m.g Eutrema salsugineum
Thhalv10017006m.g Eutrema salsugineum
TPR.G23532 Trifolium pratense
TPR.G28110 Trifolium pratense
TWI36G0653 Tripterygium wilfordii
TWI36G0996 Tripterygium wilfordii
TWI38G0173 Tripterygium wilfordii
unitig_0.g225 Utricularia gibba
unitig_747.g21728 Utricularia gibba
vmacro00710 Vaccinium macrocarpon
vmacro14681 Vaccinium macrocarpon
vmacro14682 Vaccinium macrocarpon
VMungo0251G0602 Vigna mungo
VMungo1383G3733 Vigna mungo
Zm00001eb102850 Zea mays

User provided reference genes

Program Settings