Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p30380 Brassica napus
A10p05560 Brassica napus
Aa31LG1G8060 Aethionema arabicum
Aa31LG7G3150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1227 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.874 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2705 Anthoceros agrestis
Actinidia12129 Actinidia chinensis
Actinidia23200 Actinidia chinensis
Ah.07g205320 Amaranthus hybridus
AL1G17070 Arabidopsis lyrata
AL1G30910 Arabidopsis lyrata
Aqoxy1G01294 Aquilegia oxysepala
Aqoxy6G02691 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.56UEUT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7QE80G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E854WA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FHS7BK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LFA88Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R8SLY5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SY3PZC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W46PLF Arachis hypogaea
AT1G07010 Arabidopsis thaliana
AT1G18480 Arabidopsis thaliana
ATR0582G047 Amborella trichopoda
ATR0594G062 Amborella trichopoda
ATR0736G088 Amborella trichopoda
ATR0743G194 Amborella trichopoda
Atru.BG.123.p Acer truncatum
Atru.chr2.1563 Acer truncatum
Atru.chr3.4125 Acer truncatum
AUR62001877 Chenopodium quinoa
AUR62006064 Chenopodium quinoa
AUR62009674 Chenopodium quinoa
AUR62035563 Chenopodium quinoa
BcaB02g06775 Brassica carinata
BcaB03g12983 Brassica carinata
BcaB07g31856 Brassica carinata
BcaC04g20409 Brassica carinata
BcaC05g24667 Brassica carinata
BcaC05g25741 Brassica carinata
BcaC07g38912 Brassica carinata
BcaNung06196 Brassica carinata
BolC5t29282H Brassica oleracea
BolC8t49492H Brassica oleracea
BraA06t24577Z Brassica rapa
BraA08t34971Z Brassica rapa
BraA10t42817Z Brassica rapa
C05p05110 Brassica napus
C05p16740 Brassica napus
C08p18660 Brassica napus
CAN.G1095.22 Capsicum annuum
CAN.G759.4 Capsicum annuum
CANSAT54G2788 Cannabis sativa
CANSAT56G0069 Cannabis sativa
CARHR006700 Cardamine hirsuta
CARHR019100 Cardamine hirsuta
Carub.0001s0630 Capsella rubella
Carub.0005s1262 Capsella rubella
Ca_05647_v3 Cicer arietinum L.
Ca_27098_v3 Cicer arietinum L.
Cc01_g14820 Coffea canephora
Cc03_g14310 Coffea canephora
CDE04G2686 Ceratophyllum demersum
CDE04G3450 Ceratophyllum demersum
CDE07G0327 Ceratophyllum demersum
Cfa015672 Carpinus fangiana
Ciclev10020495m.g Citrus clementina
Ciclev10028625m.g Citrus clementina
CiPaw.01G092400 Carya illinoinensis
CiPaw.01G168700 Carya illinoinensis
CiPaw.13G069700 Carya illinoinensis
ClCG03G000390 Citrullus lanatus
ClCG11G013560 Citrullus lanatus
COL.COLO4_11145 Corchorus olitorius
COL.COLO4_11148 Corchorus olitorius
COL.COLO4_38112 Corchorus olitorius
Cpa.g.sc2.360 Carica papaya
Cpa.g.sc9.374 Carica papaya
Cpa.g.sc9.376 Carica papaya
Cre02.g144900 Chlamydomonas reinhardtii
Cre03.g185200 Chlamydomonas reinhardtii
Cre17.g718800 Chlamydomonas reinhardtii
CsaV3_1G036530 Cucumis sativus L.
CsaV3_5G030180 Cucumis sativus L.
CSS0022138 Camellia sinensis var. sinensis
CSS0036604 Camellia sinensis var. sinensis
CSS0039717 Camellia sinensis var. sinensis
CSS0049843 Camellia sinensis var. sinensis
DCAR_018229 Daucus carota
DCAR_027518 Daucus carota
Dinv18326 Davidia involucrata
Dinv28695 Davidia involucrata
Dinv33212 Davidia involucrata
Duzib168G1120 Durio zibethinus
Duzib212G0374 Durio zibethinus
ECA236G2542 Erigeron canadensis
ECA246G2001 Erigeron canadensis
ECA248G2589 Erigeron canadensis
EL10Ac3g05246 Beta vulgaris
EL10Ac7g15915 Beta vulgaris
Eucgr.B04000 Eucalyptus grandis
FAN11G2708 Fragaria x ananassa
FAN11G3709 Fragaria x ananassa
FAN16G1592 Fragaria x ananassa
FAN16G2171 Fragaria x ananassa
FAN16G2606 Fragaria x ananassa
FAN21G1037 Fragaria x ananassa
FAN21G1383 Fragaria x ananassa
FAN21G2308 Fragaria x ananassa
FAN25G2288 Fragaria x ananassa
FAN25G2495 Fragaria x ananassa
FvH4_3g25460 Fragaria vesca
FvH4_3g39710 Fragaria vesca
Glyma.02G231100 Glycine max
Glyma.14G198700 Glycine max
Glyma.19G062400 Glycine max
Gohir.A09G213606 Gossypium hirsutum
Gohir.A13G234800 Gossypium hirsutum
Gohir.D09G212200 Gossypium hirsutum
Gohir.D10G122450 Gossypium hirsutum
Gohir.D13G240500 Gossypium hirsutum
Gorai.006G232000 Gossypium raimondii
Gorai.013G271300 Gossypium raimondii
GSVIVG01024637001 Vitis vinifera
GSVIVG01035133001 Vitis vinifera
HanXRQChr01g0012171 Helianthus annuus
HanXRQChr02g0059111 Helianthus annuus
HanXRQChr10g0285981 Helianthus annuus
HanXRQChr12g0371461 Helianthus annuus
Haze_00849 Corylus avellana
Haze_24408 Corylus avellana
Hma1.2p1_0241F.1_g100590 Hydrangea macrophylla
Hma1.2p1_0725F.1_g208840 Hydrangea macrophylla
HPP92_004650 Vanilla planifolia
Hund29011 Selenicereus undatus
Hund29015 Selenicereus undatus
Lalb_Chr04g0251991 Lupinus albus
Lalb_Chr10g0093701 Lupinus albus
Lj1g0002201 Lotus japonicus
Lj2A1092G52 Lonicera japonica
Lj6C207T2 Lonicera japonica
Lj6C216T6 Lonicera japonica
LjContig00141g0005241 Lotus japonicus
Lsat_1_v5_gn_2_40101 Lactuca sativa
Lsat_1_v5_gn_2_40161 Lactuca sativa
Lsat_1_v5_gn_5_174641 Lactuca sativa
Lsat_1_v5_gn_6_67620 Lactuca sativa
Manes.05G137100 Manihot esculenta
Manes.18G127800 Manihot esculenta
Mapoly0009s0052 Marchantia polymorpha
Mapoly0036s0022 Marchantia polymorpha
Mapoly0036s0024 Marchantia polymorpha
Mapoly0109s0024 Marchantia polymorpha
MBI07_g11490_MAGBIO Magnolia biondii
MCO03G600 Micromonas commoda
MCO05G011 Micromonas commoda
MCO09G027 Micromonas commoda
MCO12G166 Micromonas commoda
MD02G1292100 Malus domestica
MD03G1055900 Malus domestica
MD07G1034500 Malus domestica
MD11G1056900 Malus domestica
Medtr5g072900 Medicago truncatula
Medtr7g006040 Medicago truncatula
Medtr8g064720 Medicago truncatula
MELO3C011856.2 Cucumis melo
MELO3C020515.2 Cucumis melo
Migut.D00849 Erythranthe guttata
Migut.D02180 Erythranthe guttata
MSTRG.18642 Avicennia marina
MSTRG.21237 Avicennia marina
Nitab4.5_0000013g0500 Nicotiana tabacum
Nitab4.5_0003911g0010 Nicotiana tabacum
Nitab4.5_0007880g0070 Nicotiana tabacum
Nitab4.5_0013425g0010 Nicotiana tabacum
Nn2g11002 Nelumbo nucifera
Nn2g13968 Nelumbo nucifera
Oeu015713.2 Olea europaea
Oeu025051.1 Olea europaea
Oeu050332.1 Olea europaea
Os10g0394100 Oryza sativa ssp. japonica
Os11g0261900 Oryza sativa ssp. japonica
Peaxi162Scf00075g00133 Petunia axillaris
Peaxi162Scf00390g00724 Petunia axillaris
PGR102G1165 Punica granatum
PGR142G0923 Punica granatum
PGSC0003DMG400030377 Solanum tuberosum
PGSC0003DMG400035743 Solanum tuberosum
Phvul.005G085100 Phaseolus vulgaris
Phvul.008G256500 Phaseolus vulgaris
Potri.009G077900 Populus trichocarpa
Potri.013G127500 Populus trichocarpa
Pp3c16_8100 Physcomitrium patens
Pp3c16_8111 Physcomitrium patens
Pp3c17_14050 Physcomitrium patens
Pp3c25_5070 Physcomitrium patens
PRCOL_00000146 Prasinoderma coloniale
PRCOL_00002869 Prasinoderma coloniale
PRCOL_00003638 Prasinoderma coloniale
Prupe.2G031200 Prunus persica
Prupe.6G048800 Prunus persica
Psat2g053720 Pisum sativum
Psat4g124240 Pisum sativum
Psat5g296240 Pisum sativum
PSO017G4284 Papaver somniferum
PSO210G6884 Papaver somniferum
PSO349G0182 Papaver somniferum
PSO765G0005 Papaver somniferum
PSO832G2579 Papaver somniferum
QL01p026431 Quercus lobata
QL10p056525 Quercus lobata
QL10p056534 Quercus lobata
RcHm_v2.0_Chr4g0435781 Rosa chinensis
RcHm_v2.0_Chr5g0071581 Rosa chinensis
Rhsim09G0008800 Rhododendron simsii
Rhsim13G0064600 Rhododendron simsii
Sabra09G0059500 Salix brachista
Sabra13G0106600 Salix brachista
SalBow3G1267 Salvia bowleyana
Sc12g0002000 Simmondsia chinensis
Sc19g0002250 Simmondsia chinensis
Sed0011720 Sechium edule
Sed0022573 Sechium edule
SEGI_01120 Sequoiadendron giganteum
SEGI_18926 Sequoiadendron giganteum
SEGI_28950 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09295 Striga asiatica
SGA_v2.0_scaffold61G21166 Striga asiatica
SHI26106 Sapria himalayana
SMO304G0050 Selaginella moellendorffii
SMO358G0530 Selaginella moellendorffii
Solyc06g082280.3 Solanum lycopersicum
Solyc08g014290.1 Solanum lycopersicum
Sopen06g033660 Solanum pennellii
Sopen08g005200 Solanum pennellii
Sp1g05730 Schrenkiella parvula
Sp1g16420 Schrenkiella parvula
TAR623G0598 Trochodendron aralioides
TAR633G0323 Trochodendron aralioides
THA.LOC104800768 Tarenaya hassleriana
THA.LOC104812127 Tarenaya hassleriana
Thecc.04G164500 Theobroma cacao
Thecc.09G357200 Theobroma cacao
Thhalv10007840m.g Eutrema salsugineum
Thhalv10009773m.g Eutrema salsugineum
TPR.G29139 Trifolium pratense
TPR.G648 Trifolium pratense
TWI15G0988 Tripterygium wilfordii
TWI31G1024 Tripterygium wilfordii
TWI63G0091 Tripterygium wilfordii
TWI63G0944 Tripterygium wilfordii
unitig_0.g2143 Utricularia gibba
unitig_899.g15348 Utricularia gibba
unitig_899.g15349 Utricularia gibba
vmacro00689 Vaccinium macrocarpon
vmacro02922 Vaccinium macrocarpon
VMungo0647G2159 Vigna mungo
VMungo1080G0795 Vigna mungo
Zm00001eb048700 Zea mays
Zm00001eb169080 Zea mays
Zm00001eb202490 Zea mays
Zm00001eb260640 Zea mays
Zm00001eb310150 Zea mays
Zm00001eb412760 Zea mays

User provided reference genes

Program Settings