Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p20960 Brassica napus
A04p05770 Brassica napus
A04p28710 Brassica napus
A04p29050 Brassica napus
A05p08050 Brassica napus
Aa31LG10G8790 Aethionema arabicum
Aa31LG5G6940 Aethionema arabicum
Aa31sc250G40 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2470 Anthoceros agrestis
Actinidia01127 Actinidia chinensis
Actinidia05337 Actinidia chinensis
Actinidia29155 Actinidia chinensis
Ah.08g218190 Amaranthus hybridus
Ah.15g092710 Amaranthus hybridus
AL4G24230 Arabidopsis lyrata
AL4G34890 Arabidopsis lyrata
AL5G35020 Arabidopsis lyrata
Aqoxy1G00776 Aquilegia oxysepala
Aqoxy2G00339 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.24UGV0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5FCM8E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6GN4C8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MX2AUU Arachis hypogaea
AT2G29525 Arabidopsis thaliana
AT2G37940 Arabidopsis thaliana
AT3G54020 Arabidopsis thaliana
ATR0618G318 Amborella trichopoda
ATR0680G071 Amborella trichopoda
Atru.chr3.4047 Acer truncatum
Atru.chr8.2113 Acer truncatum
AUR62008766 Chenopodium quinoa
AUR62025472 Chenopodium quinoa
BcaB01g03498 Brassica carinata
BcaB01g03739 Brassica carinata
BcaB02g07752 Brassica carinata
BcaB02g08492 Brassica carinata
BcaB02g09234 Brassica carinata
BcaB07g33107 Brassica carinata
BcaC01g05583 Brassica carinata
BcaC02g09107 Brassica carinata
BcaC02g11923 Brassica carinata
BolC3t14858H Brassica oleracea
BolC4t22598H Brassica oleracea
BolC4t25430H Brassica oleracea
BolC4t28133H Brassica oleracea
BraA03t11335Z Brassica rapa
BraA04t16272Z Brassica rapa
BraA04t18348Z Brassica rapa
BraA04t18377Z Brassica rapa
BraA05t19772Z Brassica rapa
C03p24620 Brassica napus
C03p24680 Brassica napus
C03p24690 Brassica napus
C04p09910 Brassica napus
C04p38550 Brassica napus
C04p66290 Brassica napus
CAN.G351.17 Capsicum annuum
CAN.G502.9 Capsicum annuum
CAN.G978.6 Capsicum annuum
CANSAT35G1145 Cannabis sativa
CANSAT54G1798 Cannabis sativa
CARHR122850 Cardamine hirsuta
CARHR132490 Cardamine hirsuta
CARHR163920 Cardamine hirsuta
Carub.0004s1057 Capsella rubella
Carub.0004s1985 Capsella rubella
Carub.0005s2061 Capsella rubella
Ca_07380_v3 Cicer arietinum L.
Ca_07591_v3 Cicer arietinum L.
CBR_g47054 Chara braunii
Cc06_g01930 Coffea canephora
CDE09G1438 Ceratophyllum demersum
Cfa011624 Carpinus fangiana
Cfa017283 Carpinus fangiana
Ciclev10012250m.g Citrus clementina
Ciclev10028991m.g Citrus clementina
CiPaw.09G203500 Carya illinoinensis
CiPaw.10G151000 Carya illinoinensis
CiPaw.13G084500 Carya illinoinensis
ClCG04G007410 Citrullus lanatus
ClCG10G021650 Citrullus lanatus
COL.COLO4_14659 Corchorus olitorius
Cpa.g.sc112.97 Carica papaya
Cpa.g.sc56.76 Carica papaya
Cre06.g249800 Chlamydomonas reinhardtii
CsaV3_3G034360 Cucumis sativus L.
CsaV3_4G025840 Cucumis sativus L.
CSS0017829 Camellia sinensis var. sinensis
CSS0023503 Camellia sinensis var. sinensis
DCAR_010434 Daucus carota
DCAR_012151 Daucus carota
Dinv37101 Davidia involucrata
Duzib093G0303 Durio zibethinus
Duzib106G1073 Durio zibethinus
Duzib128G0449 Durio zibethinus
Duzib168G0669 Durio zibethinus
Duzib170G0403 Durio zibethinus
ECA236G2478 Erigeron canadensis
EL10Ac7g17650 Beta vulgaris
Eucgr.J01955 Eucalyptus grandis
Eucgr.K03013 Eucalyptus grandis
FAN02G4559 Fragaria x ananassa
FAN09G3346 Fragaria x ananassa
FAN11G3972 Fragaria x ananassa
FAN14G4011 Fragaria x ananassa
FAN16G0820 Fragaria x ananassa
FAN21G2920 Fragaria x ananassa
FAN25G0625 Fragaria x ananassa
FvH4_3g37390 Fragaria vesca
FvH4_6g12480 Fragaria vesca
Glyma.01G108000 Glycine max
Glyma.03G073768 Glycine max
Glyma.07G142000 Glycine max
Glyma.18G192800 Glycine max
Gohir.A01G223900 Gossypium hirsutum
Gohir.A04G086200 Gossypium hirsutum
Gohir.A09G162100 Gossypium hirsutum
Gohir.A11G328300 Gossypium hirsutum
Gohir.D01G213000 Gossypium hirsutum
Gohir.D04G126200 Gossypium hirsutum
Gohir.D09G157700 Gossypium hirsutum
Gohir.D11G347150 Gossypium hirsutum
Gohir.D11G347200 Gossypium hirsutum
Gorai.002G259100 Gossypium raimondii
Gorai.006G179400 Gossypium raimondii
Gorai.007G377600 Gossypium raimondii
Gorai.012G109300 Gossypium raimondii
GSVIVG01024834001 Vitis vinifera
GSVIVG01034044001 Vitis vinifera
HanXRQChr04g0124661 Helianthus annuus
HanXRQChr06g0176641 Helianthus annuus
HanXRQChr10g0293301 Helianthus annuus
HanXRQChr16g0502071 Helianthus annuus
Haze_20911 Corylus avellana
Haze_24225 Corylus avellana
Hma1.2p1_1521F.1_g288700 Hydrangea macrophylla
HPP92_012619 Vanilla planifolia
HPP92_014291 Vanilla planifolia
HPP92_019862 Vanilla planifolia
Hund10589 Selenicereus undatus
Lalb_Chr01g0022821 Lupinus albus
Lalb_Chr03g0042811 Lupinus albus
Lalb_Chr07g0193131 Lupinus albus
Lalb_Chr13g0291301 Lupinus albus
Lalb_Chr19g0124911 Lupinus albus
Lj1g0017378 Lotus japonicus
Lj2A84T93 Lonicera japonica
Lj3A959T58 Lonicera japonica
Lj3A959T59 Lonicera japonica
Lj3g0016868 Lotus japonicus
Lsat_1_v5_gn_8_80701 Lactuca sativa
Lsat_1_v5_gn_9_34461 Lactuca sativa
Manes.02G124300 Manihot esculenta
Manes.08G082900 Manihot esculenta
Manes.09G099600 Manihot esculenta
Mapoly0056s0104 Marchantia polymorpha
MBI05_g10284_MAGBIO Magnolia biondii
MBI14_g28029_MAGBIO Magnolia biondii
MD03G1081100 Malus domestica
MD04G1141900 Malus domestica
MD12G1156500 Malus domestica
Medtr4g020040 Medicago truncatula
Medtr7g065890 Medicago truncatula
MELO3C003210.2 Cucumis melo
MELO3C009207.2 Cucumis melo
MELO3C034277.2 Cucumis melo
Migut.J00252 Erythranthe guttata
Migut.J01076 Erythranthe guttata
Migut.L01980 Erythranthe guttata
MSTRG.19047 Avicennia marina
MSTRG.5614 Avicennia marina
Nitab4.5_0000008g0320 Nicotiana tabacum
Nitab4.5_0000119g0360 Nicotiana tabacum
Nitab4.5_0000652g0090 Nicotiana tabacum
Nitab4.5_0002152g0030 Nicotiana tabacum
Nitab4.5_0002823g0070 Nicotiana tabacum
Nitab4.5_0010516g0040 Nicotiana tabacum
Nn2g11307 Nelumbo nucifera
Nn2g13553 Nelumbo nucifera
Oeu003407.1 Olea europaea
Oeu009910.1 Olea europaea
Oeu018337.1 Olea europaea
Oeu036202.3 Olea europaea
Os01g0850100 Oryza sativa ssp. japonica
Os05g0287800 Oryza sativa ssp. japonica
Os05g0452900 Oryza sativa ssp. japonica
Peaxi162Scf00009g03021 Petunia axillaris
Peaxi162Scf00014g01420 Petunia axillaris
Peaxi162Scf00111g00318 Petunia axillaris
Peaxi162Scf00205g00510 Petunia axillaris
Peaxi162Scf01302g00029 Petunia axillaris
PGR004G1802 Punica granatum
PGR119G2019 Punica granatum
PGSC0003DMG400011014 Solanum tuberosum
PGSC0003DMG400019190 Solanum tuberosum
PGSC0003DMG400020365 Solanum tuberosum
Phvul.008G112500 Phaseolus vulgaris
Phvul.010G075100 Phaseolus vulgaris
Potri.001G246300 Populus trichocarpa
Potri.006G093800 Populus trichocarpa
Potri.016G105700 Populus trichocarpa
Pp3c20_10120 Physcomitrium patens
Pp3c23_1080 Physcomitrium patens
Pp3c8_19970 Physcomitrium patens
PRCOL_00006915 Prasinoderma coloniale
Prupe.6G065700 Prunus persica
Prupe.6G267300 Prunus persica
Psat0s1312g0040 Pisum sativum
PSO339G0559 Papaver somniferum
PSO384G0173 Papaver somniferum
QL01p028881 Quercus lobata
QL07p027754 Quercus lobata
RcHm_v2.0_Chr3g0464301 Rosa chinensis
RcHm_v2.0_Chr5g0067241 Rosa chinensis
Rhsim04G0163900 Rhododendron simsii
Rhsim05G0201100 Rhododendron simsii
Sabra06G0071400 Salix brachista
Sabra16G0104500 Salix brachista
SalBow4G2065 Salvia bowleyana
Sc01g0004990 Simmondsia chinensis
Sc22g0004290 Simmondsia chinensis
Sed0011293 Sechium edule
Sed0013537 Sechium edule
SEGI_09781 Sequoiadendron giganteum
SEGI_24975 Sequoiadendron giganteum
SEGI_31969 Sequoiadendron giganteum
SGA_v2.0_scaffold75G24984 Striga asiatica
SGA_v2.0_scaffold85G26805 Striga asiatica
SMO351G0304 Selaginella moellendorffii
Solyc09g011740.4 Solanum lycopersicum
Solyc10g084990.2 Solanum lycopersicum
Solyc10g086690.3 Solanum lycopersicum
Sopen09g006560 Solanum pennellii
Sopen10g034450 Solanum pennellii
Sopen10g036100 Solanum pennellii
Sp4g12250 Schrenkiella parvula
Sp4g20250 Schrenkiella parvula
Sp5g08370 Schrenkiella parvula
TAR369G1025 Trochodendron aralioides
TAR623G0407 Trochodendron aralioides
TAR623G1586 Trochodendron aralioides
TAR636G2248 Trochodendron aralioides
THA.LOC104805655 Tarenaya hassleriana
THA.LOC104823396 Tarenaya hassleriana
Thecc.05G026300 Theobroma cacao
Thecc.09G309600 Theobroma cacao
Thhalv10010600m.g Eutrema salsugineum
Thhalv10017001m.g Eutrema salsugineum
Thhalv10017029m.g Eutrema salsugineum
TPR.G13636 Trifolium pratense
TPR.G17900 Trifolium pratense
TWI74G0527 Tripterygium wilfordii
TWI79G0992 Tripterygium wilfordii
unitig_0.g1465 Utricularia gibba
unitig_578.g15887 Utricularia gibba
unitig_8.g4440 Utricularia gibba
vmacro08617 Vaccinium macrocarpon
vmacro20206 Vaccinium macrocarpon
VMungo0331G1675 Vigna mungo
VMungo1383G2532 Vigna mungo
Zm00001eb028390 Zea mays
Zm00001eb137020 Zea mays
Zm00001eb147900 Zea mays
Zm00001eb289400 Zea mays
Zm00001eb367670 Zea mays
Zm00001eb384000 Zea mays

User provided reference genes

Program Settings