Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p37580 Brassica napus
A09p05260 Brassica napus
Aa31LG11G9180 Aethionema arabicum
Aa31LG5G15560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2814 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis
Actinidia19805 Actinidia chinensis
Ah.06g190110 Amaranthus hybridus
AL3G15610 Arabidopsis lyrata
AL6G39600 Arabidopsis lyrata
AL6G39610 Arabidopsis lyrata
AL6G40910 Arabidopsis lyrata
Aqoxy1G02454 Aquilegia oxysepala
Aqoxy5G00545 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0VD1AP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7PL8A0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EXNL9P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FC6WKF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T73DMJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea
AT3G05190 Arabidopsis thaliana
AT5G27400 Arabidopsis thaliana
AT5G27410 Arabidopsis thaliana
ATR0626G263 Amborella trichopoda
ATR0626G345 Amborella trichopoda
Atru.chr2.474 Acer truncatum
Atru.chr2.475 Acer truncatum
AUR62000868 Chenopodium quinoa
AUR62000869 Chenopodium quinoa
AUR62005107 Chenopodium quinoa
AUR62005108 Chenopodium quinoa
BcaB04g19667 Brassica carinata
BcaB04g21368 Brassica carinata
BcaC04g23681 Brassica carinata
BcaC04g23682 Brassica carinata
BcaNung02463 Brassica carinata
BcaNung02464 Brassica carinata
BcaNung04367 Brassica carinata
BcaNung04368 Brassica carinata
BNapus_Darmor_BZH_scaffold_114p00250 Brassica napus
BolC1t05707H Brassica oleracea
BolC1t05708H Brassica oleracea
BolC7t44601H Brassica oleracea
BolC9t53501H Brassica oleracea
BraA06t26677Z Brassica rapa
BraA09t36165Z Brassica rapa
BraSC132t45517Z Brassica rapa
C07p40730 Brassica napus
C09p05740 Brassica napus
CAN.G1134.23 Capsicum annuum
CAN.G271.7 Capsicum annuum
CANSAT25G3036 Cannabis sativa
CANSAT54G1986 Cannabis sativa
CARHR079530 Cardamine hirsuta
CARHR186000 Cardamine hirsuta
CARHR186010 Cardamine hirsuta
Carub.0003s0444 Capsella rubella
Carub.0006s2513 Capsella rubella
Carub.0006s2514 Capsella rubella
Ca_09373_v3 Cicer arietinum L.
Ca_10093_v3 Cicer arietinum L.
CBR_g26135 Chara braunii
CBR_g26142 Chara braunii
CBR_g66786 Chara braunii
Cc02_g32700 Coffea canephora
Cc02_g32710 Coffea canephora
CDE05G0789 Ceratophyllum demersum
CDE08G1662 Ceratophyllum demersum
Cfa006549 Carpinus fangiana
Ciclev10003913m.g Citrus clementina
CiPaw.07G014700 Carya illinoinensis
CiPaw.07G014800 Carya illinoinensis
ClCG02G016020 Citrullus lanatus
COL.COLO4_13515 Corchorus olitorius
COL.COLO4_13516 Corchorus olitorius
Cpa.g.sc48.13 Carica papaya
Cpa.g.sc48.14 Carica papaya
Cre10.g458050 Chlamydomonas reinhardtii
Cre17.g747647 Chlamydomonas reinhardtii
CsaV3_2G004990 Cucumis sativus L.
CSS0010777 Camellia sinensis var. sinensis
CSS0016581 Camellia sinensis var. sinensis
CSS0026671 Camellia sinensis var. sinensis
CSS0028745 Camellia sinensis var. sinensis
CSS0035336 Camellia sinensis var. sinensis
CSS0036549 Camellia sinensis var. sinensis
DCAR_003314 Daucus carota
DCAR_029434 Daucus carota
Dinv22901 Davidia involucrata
Dinv23976 Davidia involucrata
Dinv40259 Davidia involucrata
Duzib177G0165 Durio zibethinus
ECA238G2267 Erigeron canadensis
ECA247G0575 Erigeron canadensis
EL10Ac1g01938 Beta vulgaris
EL10Ac4g09309 Beta vulgaris
EL10As2g23202 Beta vulgaris
Eucgr.B02001 Eucalyptus grandis
FAN02G2444 Fragaria x ananassa
FAN05G4192 Fragaria x ananassa
FAN05G5165 Fragaria x ananassa
FAN09G0499 Fragaria x ananassa
FAN14G0929 Fragaria x ananassa
FAN14G5684 Fragaria x ananassa
FvH4_6g05341 Fragaria vesca
FvH4_6g05350 Fragaria vesca
Glyma.03G240100 Glycine max
Glyma.03G240200 Glycine max
Glyma.10G156701 Glycine max
Glyma.10G156850 Glycine max
Glyma.19G237000 Glycine max
Glyma.19G237200 Glycine max
Gohir.A08G212300 Gossypium hirsutum
Gohir.A12G276200 Gossypium hirsutum
Gohir.A13G107100 Gossypium hirsutum
Gohir.A13G107200 Gossypium hirsutum
Gohir.D03G082850 Gossypium hirsutum
Gohir.D05G181050 Gossypium hirsutum
Gohir.D07G108333 Gossypium hirsutum
Gohir.D07G194066 Gossypium hirsutum
Gohir.D08G229300 Gossypium hirsutum
Gohir.D13G110400 Gossypium hirsutum
Gorai.001G217100 Gossypium raimondii
Gorai.004G243500 Gossypium raimondii
Gorai.005G154800 Gossypium raimondii
Gorai.010G125000 Gossypium raimondii
Gorai.012G097400 Gossypium raimondii
Gorai.012G108000 Gossypium raimondii
Gorai.013G123700 Gossypium raimondii
GSVIVG01000009001 Vitis vinifera
HanXRQChr02g0037091 Helianthus annuus
HanXRQChr14g0445961 Helianthus annuus
Haze_04233 Corylus avellana
Haze_04234 Corylus avellana
Haze_21959 Corylus avellana
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla
Hma1.2p1_0666F.1_g199470 Hydrangea macrophylla
HPP92_001339 Vanilla planifolia
HPP92_001399 Vanilla planifolia
HPP92_001400 Vanilla planifolia
HPP92_017205 Vanilla planifolia
Hund07046 Selenicereus undatus
Hund07047 Selenicereus undatus
Lalb_Chr15g0077101 Lupinus albus
Lalb_Chr18g0045531 Lupinus albus
Lj1g0019778 Lotus japonicus
Lj5g0009152 Lotus japonicus
Lj7C475G4 Lonicera japonica
Lj9C682T7 Lonicera japonica
Lsat_1_v5_gn_1_25020 Lactuca sativa
Lsat_1_v5_gn_2_67941 Lactuca sativa
Manes.09G163850 Manihot esculenta
Mapoly0006s0260 Marchantia polymorpha
Mapoly0153s0022 Marchantia polymorpha
MBI17_g29610_MAGBIO Magnolia biondii
MCO02G411 Micromonas commoda
MCO08G105 Micromonas commoda
MD04G1209000 Malus domestica
MD04G1209100 Malus domestica
MD12G1223500 Malus domestica
MD12G1223700 Malus domestica
Medtr1g082470 Medicago truncatula
Medtr1g083370 Medicago truncatula
Medtr7g113850 Medicago truncatula
Medtr8g036730 Medicago truncatula
MELO3C004297.2 Cucumis melo
Migut.B01190 Erythranthe guttata
Migut.M00920 Erythranthe guttata
Migut.N01859 Erythranthe guttata
MSTRG.16234 Avicennia marina
MSTRG.16977 Avicennia marina
MSTRG.5079 Avicennia marina
Nitab4.5_0000176g0030 Nicotiana tabacum
Nitab4.5_0001510g0020 Nicotiana tabacum
Nitab4.5_0004271g0010 Nicotiana tabacum
Nitab4.5_0006809g0010 Nicotiana tabacum
Nn1g02088 Nelumbo nucifera
Nn4g26152 Nelumbo nucifera
Oeu004302.1 Olea europaea
Oeu012095.1 Olea europaea
Oeu013073.1 Olea europaea
Oeu013074.1 Olea europaea
Oeu057684.1 Olea europaea
Oeu064147.1 Olea europaea
Os03g0359100 Oryza sativa ssp. japonica
Os05g0143200 Oryza sativa ssp. japonica
Peaxi162Scf00434g00216 Petunia axillaris
Peaxi162Scf01441g00005 Petunia axillaris
PGR031G3980 Punica granatum
PGR083G1620 Punica granatum
PGSC0003DMG400018888 Solanum tuberosum
PGSC0003DMG401028577 Solanum tuberosum
Phvul.006G093911 Phaseolus vulgaris
Phvul.006G093922 Phaseolus vulgaris
Phvul.006G093933 Phaseolus vulgaris
Potri.005G039000 Populus trichocarpa
Potri.005G039100 Populus trichocarpa
Pp3c16_17790 Physcomitrium patens
Pp3c27_4830 Physcomitrium patens
Pp3c6_24550 Physcomitrium patens
Pp3c6_5420 Physcomitrium patens
PRCOL_00000574 Prasinoderma coloniale
Prupe.6G330000 Prunus persica
Prupe.6G330100 Prunus persica
Psat3g010200 Pisum sativum
Psat6g149240 Pisum sativum
PSO210G0829 Papaver somniferum
PSO210G1325 Papaver somniferum
PSO832G1112 Papaver somniferum
QL03p004484 Quercus lobata
QL03p004498 Quercus lobata
RcHm_v2.0_Chr3g0454111 Rosa chinensis
RcHm_v2.0_Chr3g0454121 Rosa chinensis
RcHm_v2.0_Chr7g0193031 Rosa chinensis
Rhsim05G0144300 Rhododendron simsii
Rhsim05G0144400 Rhododendron simsii
Sabra05G0037500 Salix brachista
Sabra05G0037600 Salix brachista
SalBow5G4087 Salvia bowleyana
SalBow8G2918 Salvia bowleyana
Sc09g0003340 Simmondsia chinensis
Sc09g0003350 Simmondsia chinensis
Sed0024851 Sechium edule
SEGI_02207 Sequoiadendron giganteum
SEGI_18575 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00162 Striga asiatica
SGA_v2.0_scaffold232G43477 Striga asiatica
SGA_v2.0_scaffold43G16279 Striga asiatica
SMO307G0066 Selaginella moellendorffii
SMO356G0084 Selaginella moellendorffii
Solyc01g098700.4 Solanum lycopersicum
Solyc10g009400.3 Solanum lycopersicum
Sopen01g042240 Solanum pennellii
Sopen10g005180 Solanum pennellii
Sp2g20630 Schrenkiella parvula
Sp3g04040 Schrenkiella parvula
TAR362G0623 Trochodendron aralioides
TAR633G1107 Trochodendron aralioides
TAR636G3134 Trochodendron aralioides
TAR636G3242 Trochodendron aralioides
THA.LOC104802808 Tarenaya hassleriana
THA.LOC104818678 Tarenaya hassleriana
Thecc.05G308000 Theobroma cacao
Thecc.05G308100 Theobroma cacao
Thhalv10003627m.g Eutrema salsugineum
Thhalv10020427m.g Eutrema salsugineum
TPR.G2739 Trifolium pratense
TPR.G3038 Trifolium pratense
TPR.G3067 Trifolium pratense
TPR.G3085 Trifolium pratense
TPR.G3095 Trifolium pratense
TPR.G33193 Trifolium pratense
TPR.G40747 Trifolium pratense
TWI12G0069 Tripterygium wilfordii
TWI56G0412 Tripterygium wilfordii
unitig_32.g11004 Utricularia gibba
vmacro19641 Vaccinium macrocarpon
vmacro19642 Vaccinium macrocarpon
vmacro19643 Vaccinium macrocarpon
VMungo0251G1212 Vigna mungo
VMungo0540G1597 Vigna mungo
VMungo0540G2049 Vigna mungo
VMungo1080G0516 Vigna mungo
Zm00001eb017520 Zea mays
Zm00001eb417780 Zea mays

User provided reference genes

Program Settings