Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p11380 Brassica napus
A03p28860 Brassica napus
A03p57540 Brassica napus
A09p32800 Brassica napus
A10p10470 Brassica napus
Aa31LG3G9480 Aethionema arabicum
Aa31LG9G11840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1529 Anthoceros agrestis
Actinidia06145 Actinidia chinensis
Actinidia29364 Actinidia chinensis
Ah.05g170460 Amaranthus hybridus
Ah.07g205550 Amaranthus hybridus
AL1G47860 Arabidopsis lyrata
AL4G21080 Arabidopsis lyrata
AL6G44020 Arabidopsis lyrata
AL7G24810 Arabidopsis lyrata
AL8G27530 Arabidopsis lyrata
AL8G27590 Arabidopsis lyrata
Aqoxy5G04280 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.14AZRF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D1PG31 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DAH91N Arachis hypogaea
AT1G33475 Arabidopsis thaliana
AT4G10170 Arabidopsis thaliana
AT4G27840 Arabidopsis thaliana
AT5G52990 Arabidopsis thaliana
ATR1089G142 Amborella trichopoda
Atru.chr12.2223 Acer truncatum
Atru.chr13.2583 Acer truncatum
AUR62006084 Chenopodium quinoa
AUR62013393 Chenopodium quinoa
AUR62019410 Chenopodium quinoa
AUR62038544 Chenopodium quinoa
BcaB01g02764 Brassica carinata
BcaB05g21997 Brassica carinata
BcaB07g32991 Brassica carinata
BcaC01g04691 Brassica carinata
BcaC03g14467 Brassica carinata
BcaC06g32660 Brassica carinata
BcaC08g43851 Brassica carinata
BolC2t08030H Brassica oleracea
BolC3t15800H Brassica oleracea
BolC6t36385H Brassica oleracea
BolC7t46054H Brassica oleracea
BolC9t57146H Brassica oleracea
BraA02t06202Z Brassica rapa
BraA03t12084Z Brassica rapa
BraA03t14822Z Brassica rapa
BraA09t38815Z Brassica rapa
BraA10t43130Z Brassica rapa
C02p18890 Brassica napus
C03p34890 Brassica napus
C06p12340 Brassica napus
C07p55760 Brassica napus
C09p42700 Brassica napus
CAN.G14.44 Capsicum annuum
CAN.G481.18 Capsicum annuum
CANSAT54G0351 Cannabis sativa
CARHR032910 Cardamine hirsuta
CARHR235550 Cardamine hirsuta
CARHR256650 Cardamine hirsuta
CARHR265980 Cardamine hirsuta
Carub.0001s3166 Capsella rubella
Carub.0006s2873 Capsella rubella
Carub.0008s1319 Capsella rubella
Ca_14148_v3 Cicer arietinum L.
Ca_16712_v3 Cicer arietinum L.
Ca_29996_v3 Cicer arietinum L.
Cc02_g01470 Coffea canephora
Cc10_g16110 Coffea canephora
CDE04G1278 Ceratophyllum demersum
CDE04G3511 Ceratophyllum demersum
CDE07G1757 Ceratophyllum demersum
Cfa007307 Carpinus fangiana
Cfa008037 Carpinus fangiana
Cfa016236 Carpinus fangiana
Ciclev10021298m.g Citrus clementina
Ciclev10021823m.g Citrus clementina
CiPaw.03G012500 Carya illinoinensis
CiPaw.04G008800 Carya illinoinensis
CiPaw.05G197400 Carya illinoinensis
CiPaw.06G045700 Carya illinoinensis
ClCG09G018560 Citrullus lanatus
ClCG11G008270 Citrullus lanatus
COL.COLO4_32380 Corchorus olitorius
Cpa.g.sc142.3 Carica papaya
Cpa.g.sc3.94 Carica papaya
CsaV3_2G033340 Cucumis sativus L.
CsaV3_5G037670 Cucumis sativus L.
CSS0004784 Camellia sinensis var. sinensis
CSS0013405 Camellia sinensis var. sinensis
CSS0038427 Camellia sinensis var. sinensis
DCAR_010596 Daucus carota
DCAR_014059 Daucus carota
Dinv22053 Davidia involucrata
Dinv29272 Davidia involucrata
Dinv37399 Davidia involucrata
Duzib052G0822 Durio zibethinus
Duzib084G1168 Durio zibethinus
Duzib132G0640 Durio zibethinus
Duzib205G0023 Durio zibethinus
Duzib248G0016 Durio zibethinus
ECA233G1114 Erigeron canadensis
EL10Ac3g05273 Beta vulgaris
Eucgr.F04087 Eucalyptus grandis
Eucgr.K00388 Eucalyptus grandis
FAN01G0698 Fragaria x ananassa
FAN03G1114 Fragaria x ananassa
FAN06G0283 Fragaria x ananassa
FAN06G0879 Fragaria x ananassa
FAN06G2719 Fragaria x ananassa
FAN10G2266 Fragaria x ananassa
FAN11G2013 Fragaria x ananassa
FAN19G1374 Fragaria x ananassa
FvH4_2g00290 Fragaria vesca
FvH4_3g34460 Fragaria vesca
FvH4_7g31440 Fragaria vesca
Glyma.04G111600 Glycine max
Glyma.04G235100 Glycine max
Glyma.06G129500 Glycine max
Glyma.06G322700 Glycine max
Gohir.A01G010600 Gossypium hirsutum
Gohir.A12G249500 Gossypium hirsutum
Gohir.D01G010200 Gossypium hirsutum
Gohir.D12G250300 Gossypium hirsutum
Gorai.002G012300 Gossypium raimondii
Gorai.008G268400 Gossypium raimondii
GSVIVG01037140001 Vitis vinifera
HanXRQChr08g0225361 Helianthus annuus
Haze_00205 Corylus avellana
Haze_14008 Corylus avellana
Haze_14786 Corylus avellana
Hma1.2p1_0404F.1_g145300 Hydrangea macrophylla
Hma1.2p1_1507F.1_g287620 Hydrangea macrophylla
Hma1.2p1_1587F.1_g292300 Hydrangea macrophylla
HPP92_002937 Vanilla planifolia
HPP92_004499 Vanilla planifolia
Lalb_Chr08g0240191 Lupinus albus
Lalb_Chr11g0066921 Lupinus albus
Lalb_Chr18g0048501 Lupinus albus
Lj1g0024019 Lotus japonicus
Lj3g0008234 Lotus japonicus
Lj5g0009537 Lotus japonicus
Lj7P416T23 Lonicera japonica
Lsat_1_v5_gn_4_132401 Lactuca sativa
Lsat_1_v5_gn_8_5280 Lactuca sativa
Manes.01G184100 Manihot esculenta
Manes.02G143800 Manihot esculenta
Manes.02G200286 Manihot esculenta
Manes.18G108900 Manihot esculenta
MBI06_g32150_MAGBIO Magnolia biondii
MBI07_g37203_MAGBIO Magnolia biondii
MD01G1217900 Malus domestica
MD05G1005900 Malus domestica
MD07G1287600 Malus domestica
Medtr3g010290 Medicago truncatula
Medtr3g091610 Medicago truncatula
MELO3C008104.2 Cucumis melo
MELO3C021488.2 Cucumis melo
Migut.C01401 Erythranthe guttata
Migut.F00205 Erythranthe guttata
Migut.F01026 Erythranthe guttata
MSTRG.1611 Avicennia marina
MSTRG.8649 Avicennia marina
Nitab4.5_0000079g0150 Nicotiana tabacum
Nitab4.5_0001489g0060 Nicotiana tabacum
Nitab4.5_0005393g0010 Nicotiana tabacum
Nitab4.5_0006591g0010 Nicotiana tabacum
Nitab4.5_0007005g0010 Nicotiana tabacum
Nitab4.5_0007335g0010 Nicotiana tabacum
Nitab4.5_0007657g0050 Nicotiana tabacum
Nn1g08407 Nelumbo nucifera
Nn5g27215 Nelumbo nucifera
Nn5g27216 Nelumbo nucifera
Oeu010693.1 Olea europaea
Oeu020629.4 Olea europaea
Oeu028623.1 Olea europaea
Oeu037180.2 Olea europaea
Oeu060990.1 Olea europaea
Os08g0110300 Oryza sativa ssp. japonica
Peaxi162Scf00078g00112 Petunia axillaris
Peaxi162Scf00740g00014 Petunia axillaris
PGR142G3961 Punica granatum
PGSC0003DMG400018551 Solanum tuberosum
PGSC0003DMG400033147 Solanum tuberosum
Phvul.005G003400 Phaseolus vulgaris
Phvul.009G052000 Phaseolus vulgaris
Potri.003G048600 Populus trichocarpa
Potri.012G016400 Populus trichocarpa
Potri.013G094900 Populus trichocarpa
Potri.015G012300 Populus trichocarpa
Pp3c20_6780 Physcomitrium patens
Pp3c24_6430 Physcomitrium patens
Pp3c8_14310 Physcomitrium patens
Prupe.1G466500 Prunus persica
Prupe.2G309300 Prunus persica
Prupe.8G002800 Prunus persica
Prupe.8G086200 Prunus persica
Psat5g076720 Pisum sativum
Psat5g233600 Pisum sativum
PSO063G6637 Papaver somniferum
PSO135G0507 Papaver somniferum
PSO210G6801 Papaver somniferum
PSO782G5177 Papaver somniferum
PSO832G4337 Papaver somniferum
QL09p001240 Quercus lobata
QL09p008716 Quercus lobata
RcHm_v2.0_Chr1g0359031 Rosa chinensis
RcHm_v2.0_Chr1g0380501 Rosa chinensis
RcHm_v2.0_Chr2g0122261 Rosa chinensis
RcHm_v2.0_Chr6g0249571 Rosa chinensis
Rhsim08G0125100 Rhododendron simsii
Rhsim09G0206000 Rhododendron simsii
Sabra13G0081000 Salix brachista
Sabra15G0009900 Salix brachista
SalBow4G2158 Salvia bowleyana
SalBow7G2174 Salvia bowleyana
Sc01g0000040 Simmondsia chinensis
Sc01g0000170 Simmondsia chinensis
Sc13g0009890 Simmondsia chinensis
Sed0003835 Sechium edule
Sed0021708 Sechium edule
Sed0027115 Sechium edule
SEGI_19070 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32639 Striga asiatica
SGA_v2.0_scaffold13G06539 Striga asiatica
SGA_v2.0_scaffold192G40535 Striga asiatica
SGA_v2.0_scaffold55G19774 Striga asiatica
SMO137G0259 Selaginella moellendorffii
SMO143G0154 Selaginella moellendorffii
Solyc03g083070.3 Solanum lycopersicum
Solyc06g064430.1 Solanum lycopersicum
Sopen03g022870 Solanum pennellii
Sopen06g022900 Solanum pennellii
Sp1g28920 Schrenkiella parvula
Sp6g07230 Schrenkiella parvula
Sp6g15150 Schrenkiella parvula
TAR371G0445 Trochodendron aralioides
TAR374G0327 Trochodendron aralioides
TAR375G0270 Trochodendron aralioides
TAR381G0560 Trochodendron aralioides
THA.LOC104799973 Tarenaya hassleriana
THA.LOC104811915 Tarenaya hassleriana
THA.LOC104813083 Tarenaya hassleriana
THA.LOC104815757 Tarenaya hassleriana
THA.LOC104825149 Tarenaya hassleriana
Thecc.02G130100 Theobroma cacao
Thecc.03G200000 Theobroma cacao
Thhalv10008489m.g Eutrema salsugineum
Thhalv10016082m.g Eutrema salsugineum
Thhalv10025998m.g Eutrema salsugineum
Thhalv10028894m.g Eutrema salsugineum
TPR.G19364 Trifolium pratense
TPR.G5120 Trifolium pratense
TWI18G1273 Tripterygium wilfordii
TWI23G0928 Tripterygium wilfordii
TWI39G0578 Tripterygium wilfordii
unitig_26.g9857 Utricularia gibba
unitig_46.g17978 Utricularia gibba
unitig_749.g13867 Utricularia gibba
unitig_90.g27524 Utricularia gibba
vmacro10125 Vaccinium macrocarpon
vmacro17748 Vaccinium macrocarpon
VMungo1080G1313 Vigna mungo
Zm00001eb260450 Zea mays
Zm00001eb366380 Zea mays

User provided reference genes

Program Settings