Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25930 Brassica napus
A09p27050 Brassica napus
Aa31LG9G10410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.718 Anthoceros agrestis
Actinidia06880 Actinidia chinensis
Actinidia16301 Actinidia chinensis
Actinidia16302 Actinidia chinensis
Ah.06g193550 Amaranthus hybridus
AL6G46900 Arabidopsis lyrata
Aqoxy1G00203 Aquilegia oxysepala
Aqoxy7G01098 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.ARQM3U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EPQ3BP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R03J4Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SMM6ZV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U422EF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UZB4HH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WK1WTY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YJX7RI Arachis hypogaea
AT4G12070 Arabidopsis thaliana
ATR0598G325 Amborella trichopoda
ATR0605G168 Amborella trichopoda
Atru.chr3.2552 Acer truncatum
Atru.chr7.1869 Acer truncatum
Atru.chr7.1872 Acer truncatum
AUR62000085 Chenopodium quinoa
AUR62019257 Chenopodium quinoa
AUR62043579 Chenopodium quinoa
AUR62043684 Chenopodium quinoa
BcaB01g01717 Brassica carinata
BcaB05g23771 Brassica carinata
BcaC03g16313 Brassica carinata
BcaC04g21201 Brassica carinata
BolC2t10148H Brassica oleracea
BolC9t56280H Brassica oleracea
BraA02t07588Z Brassica rapa
BraA09t38276Z Brassica rapa
C02p41260 Brassica napus
C09p34380 Brassica napus
CAN.G704.1 Capsicum annuum
CANSAT25G0767 Cannabis sativa
CANSAT56G4386 Cannabis sativa
CARHR254160 Cardamine hirsuta
Carub.0006s3119 Capsella rubella
Ca_01278_v3 Cicer arietinum L.
Ca_15841_v3 Cicer arietinum L.
Ca_20579_v3 Cicer arietinum L.
Cc01_g04390 Coffea canephora
Cc08_g01360 Coffea canephora
CDE05G1246 Ceratophyllum demersum
CDE05G2289 Ceratophyllum demersum
Cfa009716 Carpinus fangiana
Ciclev10010315m.g Citrus clementina
Ciclev10015048m.g Citrus clementina
CiPaw.13G164700 Carya illinoinensis
CiPaw.14G122500 Carya illinoinensis
CiPaw.14G122700 Carya illinoinensis
CiPaw.15G088900 Carya illinoinensis
ClCG02G023450 Citrullus lanatus
ClCG05G018160 Citrullus lanatus
COL.COLO4_21118 Corchorus olitorius
COL.COLO4_24828 Corchorus olitorius
Cpa.g.sc126.44 Carica papaya
Cpa.g.sc84.91 Carica papaya
CsaV3_4G024050 Cucumis sativus L.
CsaV3_4G035920 Cucumis sativus L.
CSS0032394 Camellia sinensis var. sinensis
DCAR_002044 Daucus carota
DCAR_007766 Daucus carota
DCAR_023758 Daucus carota
DCAR_029941 Daucus carota
Dinv08045 Davidia involucrata
Dinv36293 Davidia involucrata
Dinv41831 Davidia involucrata
Duzib150G0188 Durio zibethinus
Duzib150G1060 Durio zibethinus
Duzib168G0207 Durio zibethinus
Duzib168G1752 Durio zibethinus
Duzib170G1079 Durio zibethinus
ECA233G4099 Erigeron canadensis
ECA240G4834 Erigeron canadensis
EL10Ac4g10309 Beta vulgaris
Eucgr.C00696 Eucalyptus grandis
Eucgr.C00704 Eucalyptus grandis
Eucgr.C01886 Eucalyptus grandis
Eucgr.J00798 Eucalyptus grandis
FAN01G1158 Fragaria x ananassa
FAN01G2699 Fragaria x ananassa
FAN03G1245 Fragaria x ananassa
FAN05G1732 Fragaria x ananassa
FAN06G1491 Fragaria x ananassa
FAN07G1065 Fragaria x ananassa
FAN09G1263 Fragaria x ananassa
FAN10G1140 Fragaria x ananassa
FAN10G3552 Fragaria x ananassa
FAN11G0783 Fragaria x ananassa
FAN11G0849 Fragaria x ananassa
FAN11G1190 Fragaria x ananassa
FAN12G1957 Fragaria x ananassa
FAN14G4235 Fragaria x ananassa
FAN15G0815 Fragaria x ananassa
FAN15G3150 Fragaria x ananassa
FAN16G1676 Fragaria x ananassa
FAN18G1778 Fragaria x ananassa
FAN19G2349 Fragaria x ananassa
FAN20G2271 Fragaria x ananassa
FAN21G0987 Fragaria x ananassa
FAN21G1265 Fragaria x ananassa
FAN22G1401 Fragaria x ananassa
FAN25G0160 Fragaria x ananassa
FAN25G0516 Fragaria x ananassa
FAN27G1131 Fragaria x ananassa
FAN27G1763 Fragaria x ananassa
FAN28G1120 Fragaria x ananassa
FAN28G1798 Fragaria x ananassa
FvH4_2g07530 Fragaria vesca
FvH4_3g43310 Fragaria vesca
FvH4_5g11310 Fragaria vesca
FvH4_7g08721 Fragaria vesca
Glyma.06G055000 Glycine max
Glyma.11G131000 Glycine max
Glyma.12G055300 Glycine max
Glyma.13G341900 Glycine max
Glyma.15G032400 Glycine max
Glyma.20G016300 Glycine max
Glyma.20G016700 Glycine max
Gohir.A06G084700 Gossypium hirsutum
Gohir.A07G125700 Gossypium hirsutum
Gohir.A09G115100 Gossypium hirsutum
Gohir.D06G083900 Gossypium hirsutum
Gohir.D07G129901 Gossypium hirsutum
Gohir.D09G111700 Gossypium hirsutum
Gorai.001G140400 Gossypium raimondii
Gorai.006G129500 Gossypium raimondii
Gorai.010G097400 Gossypium raimondii
GSVIVG01025315001 Vitis vinifera
GSVIVG01035443001 Vitis vinifera
HanXRQChr03g0069511 Helianthus annuus
HanXRQChr13g0404001 Helianthus annuus
Haze_18131 Corylus avellana
Haze_23066 Corylus avellana
Haze_23069 Corylus avellana
Hma1.2p1_0022F.1_g014550 Hydrangea macrophylla
Hma1.2p1_0231F.1_g097490 Hydrangea macrophylla
Hma1.2p1_0728F.1_g209330 Hydrangea macrophylla
Hma1.2p1_0926F.1_g237500 Hydrangea macrophylla
Lalb_Chr03g0026231 Lupinus albus
Lalb_Chr14g0372211 Lupinus albus
Lj1g0017196 Lotus japonicus
Lj2A649G45 Lonicera japonica
Lj3g0008300 Lotus japonicus
Lj3g0023719 Lotus japonicus
Lsat_1_v5_gn_6_48640 Lactuca sativa
Lsat_1_v5_gn_7_60100 Lactuca sativa
Manes.03G052200 Manihot esculenta
Manes.06G167900 Manihot esculenta
MBI01_g36438_MAGBIO Magnolia biondii
MBI19_g20412_MAGBIO Magnolia biondii
MBI19_g20413_MAGBIO Magnolia biondii
MD08G1069400 Malus domestica
MD11G1027800 Malus domestica
MD15G1052700 Malus domestica
Medtr2g098340 Medicago truncatula
Medtr3g104820 Medicago truncatula
Medtr4g065980 Medicago truncatula
MELO3C014617.2 Cucumis melo
MELO3C016900.2 Cucumis melo
Migut.A00092 Erythranthe guttata
Migut.D00566 Erythranthe guttata
Migut.N01889 Erythranthe guttata
Migut.N02300 Erythranthe guttata
MSTRG.17576 Avicennia marina
Nitab4.5_0000175g0060 Nicotiana tabacum
Nitab4.5_0002278g0060 Nicotiana tabacum
Nitab4.5_0004953g0040 Nicotiana tabacum
Nitab4.5_0007748g0010 Nicotiana tabacum
Nn2g15512 Nelumbo nucifera
Nn7g36091 Nelumbo nucifera
Oeu045451.1 Olea europaea
Oeu055810.1 Olea europaea
Oeu055812.1 Olea europaea
Os02g0717600 Oryza sativa ssp. japonica
Os08g0333100 Oryza sativa ssp. japonica
Os09g0281800 Oryza sativa ssp. japonica
Os09g0488700 Oryza sativa ssp. japonica
Os10g0370100 Oryza sativa ssp. japonica
Peaxi162Scf00809g00213 Petunia axillaris
Peaxi162Scf00839g00235 Petunia axillaris
PGR031G0116 Punica granatum
PGR031G1185 Punica granatum
PGR102G1632 Punica granatum
PGR119G0847 Punica granatum
PGSC0003DMG400021750 Solanum tuberosum
PGSC0003DMG400039935 Solanum tuberosum
Phvul.011G057300 Phaseolus vulgaris
Phvul.L011143 Phaseolus vulgaris
Potri.001G017000 Populus trichocarpa
Potri.003G207600 Populus trichocarpa
Potri.018G050100 Populus trichocarpa
Pp3c14_20320 Physcomitrium patens
Pp3c17_18410 Physcomitrium patens
Pp3c1_29260 Physcomitrium patens
Pp3c2_13140 Physcomitrium patens
Prupe.1G406600 Prunus persica
Prupe.6G021800 Prunus persica
Psat0s3083g0120 Pisum sativum
Psat5g035120 Pisum sativum
Psat5g288320 Pisum sativum
PSO063G6605 Papaver somniferum
PSO339G0387 Papaver somniferum
PSO384G3896 Papaver somniferum
PSO421G0570 Papaver somniferum
QL01p005723 Quercus lobata
QL02p000343 Quercus lobata
QL11p056581 Quercus lobata
RcHm_v2.0_Chr1g0343961 Rosa chinensis
RcHm_v2.0_Chr5g0077371 Rosa chinensis
Rhsim13G0224600 Rhododendron simsii
Sabra01G0011900 Salix brachista
Sabra03G0153100 Salix brachista
SalBow4G0496 Salvia bowleyana
SalBow4G1692 Salvia bowleyana
SalBow4G1723 Salvia bowleyana
Sed0011721 Sechium edule
Sed0013137 Sechium edule
SEGI_03103 Sequoiadendron giganteum
SEGI_25642 Sequoiadendron giganteum
SEGI_33046 Sequoiadendron giganteum
SEGI_41426 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00812 Striga asiatica
SGA_v2.0_scaffold3G01539 Striga asiatica
SGA_v2.0_scaffold69G23338 Striga asiatica
SMO340G0133 Selaginella moellendorffii
SMO356G0573 Selaginella moellendorffii
SMO364G0253 Selaginella moellendorffii
Solyc08g062200.3 Solanum lycopersicum
Solyc11g056620.3 Solanum lycopersicum
Sopen08g017800 Solanum pennellii
Sopen11g023360 Solanum pennellii
Sp6g05430 Schrenkiella parvula
TAR369G0468 Trochodendron aralioides
TAR383G0261 Trochodendron aralioides
TAR623G0073 Trochodendron aralioides
TAR623G0292 Trochodendron aralioides
TAR626G0542 Trochodendron aralioides
TAR636G0047 Trochodendron aralioides
THA.LOC104799095 Tarenaya hassleriana
Thecc.03G111400 Theobroma cacao
Thecc.09G060600 Theobroma cacao
Thecc.09G226200 Theobroma cacao
Thhalv10028621m.g Eutrema salsugineum
TPR.G13667 Trifolium pratense
TPR.G3523 Trifolium pratense
TPR.G40863 Trifolium pratense
TPR.G6841 Trifolium pratense
TWI32G0526 Tripterygium wilfordii
TWI34G0903 Tripterygium wilfordii
unitig_22.g6208 Utricularia gibba
unitig_699.g19126 Utricularia gibba
unitig_699.g19127 Utricularia gibba
unitig_8.g3000 Utricularia gibba
vmacro04178 Vaccinium macrocarpon
VMungo1080G0873 Vigna mungo
VMungo1127G1966 Vigna mungo
Zm00001eb097340 Zea mays
Zm00001eb252800 Zea mays
Zm00001eb316700 Zea mays

User provided reference genes

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