Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p04220 Brassica napus
A07p33460 Brassica napus
A10p21930 Brassica napus
A10p21940 Brassica napus
Aa31LG11G12180 Aethionema arabicum
Aa31LG2G3150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis
Actinidia15922 Actinidia chinensis
Actinidia15923 Actinidia chinensis
Ah.10g037920 Amaranthus hybridus
Ah.10g037990 Amaranthus hybridus
AL2G23020 Arabidopsis lyrata
AL2G24330 Arabidopsis lyrata
AL6G28530 Arabidopsis lyrata
Aqoxy3G00142 Aquilegia oxysepala
Aqoxy3G04016 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea
AT1G66510 Arabidopsis thaliana
AT5G17460 Arabidopsis thaliana
ATR0041G006 Amborella trichopoda
ATR0686G028 Amborella trichopoda
Atru.chr1.1780 Acer truncatum
Atru.chr1.1783 Acer truncatum
Atru.chr4.1673 Acer truncatum
AUR62023197 Chenopodium quinoa
AUR62023202 Chenopodium quinoa
AUR62023246 Chenopodium quinoa
AUR62023248 Chenopodium quinoa
BcaB03g15263 Brassica carinata
BcaB08g36768 Brassica carinata
BcaC03g13522 Brassica carinata
BcaC04g18790 Brassica carinata
BcaC08g46049 Brassica carinata
BolC2t06821H Brassica oleracea
BolC6t39073H Brassica oleracea
BolC9t58807H Brassica oleracea
BraA02t05385Z Brassica rapa
BraA07t30972Z Brassica rapa
BraA10t44252Z Brassica rapa
C02p09100 Brassica napus
C06p39850 Brassica napus
C09p59690 Brassica napus
CAN.G625.80 Capsicum annuum
CAN.G625.81 Capsicum annuum
CANSAT78G0797 Cannabis sativa
CANSAT78G2192 Cannabis sativa
CARHR058490 Cardamine hirsuta
CARHR195750 Cardamine hirsuta
Carub.0002s1253 Capsella rubella
Carub.0006s1568 Capsella rubella
Ca_05868_v3 Cicer arietinum L.
Ca_05898_v3 Cicer arietinum L.
Ca_06135_v3 Cicer arietinum L.
CBR_g28641 Chara braunii
Cc07_g08220 Coffea canephora
Cc07_g08230 Coffea canephora
CDE04G0829 Ceratophyllum demersum
CDE06G0370 Ceratophyllum demersum
CDE07G0699 Ceratophyllum demersum
Cfa007855 Carpinus fangiana
Cfa007856 Carpinus fangiana
Ciclev10011939m.g Citrus clementina
Ciclev10012168m.g Citrus clementina
CiPaw.04G045700 Carya illinoinensis
CiPaw.04G045800 Carya illinoinensis
ClCG05G010840 Citrullus lanatus
ClCG05G010860 Citrullus lanatus
ClCG05G010870 Citrullus lanatus
COL.COLO4_15704 Corchorus olitorius
COL.COLO4_16592 Corchorus olitorius
COL.COLO4_16593 Corchorus olitorius
Cpa.g.sc116.19 Carica papaya
Cpa.g.sc116.20 Carica papaya
Cpa.g.sc116.21 Carica papaya
Cre05.g244750 Chlamydomonas reinhardtii
CsaV3_1G043810 Cucumis sativus L.
CsaV3_3G017670 Cucumis sativus L.
CSS0023678 Camellia sinensis var. sinensis
DCAR_022460 Daucus carota
Dinv19004 Davidia involucrata
Dinv19005 Davidia involucrata
Duzib211G0581 Durio zibethinus
Duzib248G1146 Durio zibethinus
ECA232G3521 Erigeron canadensis
ECA232G4028 Erigeron canadensis
EL10Ac2g04489 Beta vulgaris
EL10Ac2g04494 Beta vulgaris
Eucgr.F02816 Eucalyptus grandis
Eucgr.F02817 Eucalyptus grandis
FAN19G0538 Fragaria x ananassa
FAN19G1396 Fragaria x ananassa
FAN23G2237 Fragaria x ananassa
FAN26G2179 Fragaria x ananassa
FAN28G0504 Fragaria x ananassa
FAN28G0812 Fragaria x ananassa
FAN28G0948 Fragaria x ananassa
FAN28G1150 Fragaria x ananassa
FAN28G2473 Fragaria x ananassa
FvH4_1g30040 Fragaria vesca
FvH4_1g30050 Fragaria vesca
Glyma.02G247400 Glycine max
Glyma.13G079200 Glycine max
Glyma.14G068800 Glycine max
Glyma.14G164000 Glycine max
Gohir.A04G142800 Gossypium hirsutum
Gohir.A07G193350 Gossypium hirsutum
Gohir.A08G052800 Gossypium hirsutum
Gohir.A08G229450 Gossypium hirsutum
Gohir.A09G155300 Gossypium hirsutum
Gohir.A10G143300 Gossypium hirsutum
Gohir.A12G000900 Gossypium hirsutum
Gohir.D02G126132 Gossypium hirsutum
Gohir.D02G177580 Gossypium hirsutum
Gohir.D03G005233 Gossypium hirsutum
Gohir.D04G118901 Gossypium hirsutum
Gohir.D04G186100 Gossypium hirsutum
Gohir.D06G126066 Gossypium hirsutum
Gohir.D08G062400 Gossypium hirsutum
Gohir.D10G126550 Gossypium hirsutum
Gorai.003G061900 Gossypium raimondii
Gorai.004G064600 Gossypium raimondii
Gorai.004G103000 Gossypium raimondii
Gorai.007G247100 Gossypium raimondii
Gorai.010G146900 Gossypium raimondii
Gorai.012G115800 Gossypium raimondii
Gorai.012G182500 Gossypium raimondii
GSVIVG01030877001 Vitis vinifera
GSVIVG01030878001 Vitis vinifera
GSVIVG01030879001 Vitis vinifera
HanXRQChr11g0325221 Helianthus annuus
HanXRQChr11g0325231 Helianthus annuus
Haze_14213 Corylus avellana
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla
HPP92_000766 Vanilla planifolia
Hund13689 Selenicereus undatus
Hund13690 Selenicereus undatus
Lalb_Chr03g0036071 Lupinus albus
Lalb_Chr04g0249391 Lupinus albus
Lalb_Chr04g0251281 Lupinus albus
Lj2P435T31 Lonicera japonica
Lj4A178G42 Lonicera japonica
LjContig00141g0005291 Lotus japonicus
LjContig00564g0008816 Lotus japonicus
Lsat_1_v5_gn_4_154740 Lactuca sativa
Lsat_1_v5_gn_4_154760 Lactuca sativa
Manes.01G115200 Manihot esculenta
Manes.01G115300 Manihot esculenta
Mapoly0209s0005 Marchantia polymorpha
MBI16_g05920_MAGBIO Magnolia biondii
MBI16_g46274_MAGBIO Magnolia biondii
MD09G1260700 Malus domestica
MD09G1260800 Malus domestica
MD09G1260900 Malus domestica
MD09G1261000 Malus domestica
Medtr5g079770 Medicago truncatula
Medtr5g086010 Medicago truncatula
Medtr5g087440 Medicago truncatula
MELO3C020300.2 Cucumis melo
MELO3C020303.2 Cucumis melo
Migut.H00262 Erythranthe guttata
Migut.L00470 Erythranthe guttata
MSTRG.23612 Avicennia marina
MSTRG.3529 Avicennia marina
Nitab4.5_0002248g0020 Nicotiana tabacum
Nitab4.5_0002248g0030 Nicotiana tabacum
Nitab4.5_0002456g0160 Nicotiana tabacum
Nitab4.5_0004399g0050 Nicotiana tabacum
Nn3g18195 Nelumbo nucifera
Nn3g18196 Nelumbo nucifera
Oeu047421.1 Olea europaea
Oeu047422.1 Olea europaea
Os01g0125700 Oryza sativa ssp. japonica
Os04g0132300 Oryza sativa ssp. japonica
Peaxi162Scf00803g00527 Petunia axillaris
Peaxi162Scf00803g00531 Petunia axillaris
PGR004G1192 Punica granatum
PGR004G1229 Punica granatum
PGSC0003DMG400030642 Solanum tuberosum
PGSC0003DMG400030643 Solanum tuberosum
Phvul.004G133300 Phaseolus vulgaris
Phvul.008G162400 Phaseolus vulgaris
Phvul.008G233500 Phaseolus vulgaris
Potri.004G091600 Populus trichocarpa
Potri.017G123900 Populus trichocarpa
Pp3c15_1450 Physcomitrium patens
PRCOL_00001496 Prasinoderma coloniale
Prupe.3G152500 Prunus persica
Prupe.3G158200 Prunus persica
Psat2g023480 Pisum sativum
Psat2g045240 Pisum sativum
PSO017G6098 Papaver somniferum
PSO478G1642 Papaver somniferum
PSO782G0049 Papaver somniferum
QL05p058873 Quercus lobata
QL05p059463 Quercus lobata
QL05p059601 Quercus lobata
QL05p059839 Quercus lobata
QL11p004025 Quercus lobata
QL11p004209 Quercus lobata
QL11p004257 Quercus lobata
QL11p004402 Quercus lobata
QL11p004418 Quercus lobata
RcHm_v2.0_Chr3g0492091 Rosa chinensis
RcHm_v2.0_Chr3g0492101 Rosa chinensis
Rhsim10G0078900 Rhododendron simsii
Rhsim10G0079100 Rhododendron simsii
Sabra04G0061700 Salix brachista
Sabra17G0102100 Salix brachista
Sabra17G0104800 Salix brachista
SalBow3G4287 Salvia bowleyana
SalBow7G0143 Salvia bowleyana
Sc10g0000870 Simmondsia chinensis
Sc11g0008590 Simmondsia chinensis
Sed0014940 Sechium edule
Sed0021694 Sechium edule
SEGI_13453 Sequoiadendron giganteum
SEGI_27826 Sequoiadendron giganteum
SEGI_34238 Sequoiadendron giganteum
SEGI_34356 Sequoiadendron giganteum
SGA_v2.0_scaffold329G48866 Striga asiatica
SGA_v2.0_scaffold6G03262 Striga asiatica
SGA_v2.0_scaffold6G03263 Striga asiatica
SGA_v2.0_scaffold6G03266 Striga asiatica
SGA_v2.0_scaffold6G03268 Striga asiatica
SHI17045 Sapria himalayana
SMO196G0007 Selaginella moellendorffii
Solyc02g091320.4 Solanum lycopersicum
Solyc02g091330.4 Solanum lycopersicum
Sopen02g035940 Solanum pennellii
Sopen02g035950 Solanum pennellii
Sp5g21560 Schrenkiella parvula
Sp6g26760 Schrenkiella parvula
TAR371G0457 Trochodendron aralioides
TAR622G0880 Trochodendron aralioides
THA.LOC104805600 Tarenaya hassleriana
Thecc.02G292900 Theobroma cacao
Thecc.04G122200 Theobroma cacao
Thhalv10014009m.g Eutrema salsugineum
Thhalv10018669m.g Eutrema salsugineum
TPR.G11790 Trifolium pratense
TPR.G15212 Trifolium pratense
TPR.G18743 Trifolium pratense
TPR.G22657 Trifolium pratense
TPR.G25728 Trifolium pratense
TPR.G3463 Trifolium pratense
TPR.G3472 Trifolium pratense
TPR.G3477 Trifolium pratense
TPR.G3492 Trifolium pratense
TPR.G3505 Trifolium pratense
TPR.G39323 Trifolium pratense
TPR.G4379 Trifolium pratense
TPR.G5666 Trifolium pratense
TWI53G1346 Tripterygium wilfordii
TWI74G1499 Tripterygium wilfordii
unitig_32.g11881 Utricularia gibba
unitig_899.g15351 Utricularia gibba
vmacro05501 Vaccinium macrocarpon
VMungo0464G1199 Vigna mungo
VMungo0647G1217 Vigna mungo
VMungo1309G0890 Vigna mungo
Zm00001eb088880 Zea mays
Zm00001eb334950 Zea mays

User provided reference genes

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