Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p04090 Brassica napus
A06p17460 Brassica napus
A08p28970 Brassica napus
Aa31LG7G5500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2021 Anthoceros agrestis
Actinidia01385 Actinidia chinensis
Actinidia03432 Actinidia chinensis
Actinidia03433 Actinidia chinensis
Actinidia03434 Actinidia chinensis
Actinidia29500 Actinidia chinensis
Ah.02g112990 Amaranthus hybridus
Ah.03g146870 Amaranthus hybridus
Ah.05g169220 Amaranthus hybridus
AL1G34510 Arabidopsis lyrata
AL6G19690 Arabidopsis lyrata
Aqoxy6G00344 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.57ZPJQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B1W7C6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EB1RPN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PAC19I Arachis hypogaea
AT1G21400 Arabidopsis thaliana
AT5G09300 Arabidopsis thaliana
AT5G34780 Arabidopsis thaliana
ATR0584G022 Amborella trichopoda
Atru.chr1.100 Acer truncatum
Atru.chr1.3582 Acer truncatum
Atru.chr13.1645 Acer truncatum
Atru.chr2.1381 Acer truncatum
Atru.chr4.877 Acer truncatum
AUR62003582 Chenopodium quinoa
AUR62007673 Chenopodium quinoa
AUR62013461 Chenopodium quinoa
AUR62017890 Chenopodium quinoa
AUR62017895 Chenopodium quinoa
AUR62043726 Chenopodium quinoa
BcaB03g12817 Brassica carinata
BcaB07g32130 Brassica carinata
BcaC05g26049 Brassica carinata
BcaC05g26050 Brassica carinata
BcaC07g39097 Brassica carinata
BolC3t12986H Brassica oleracea
BolC5t30724H Brassica oleracea
BolC8t49719H Brassica oleracea
BraA03t09752Z Brassica rapa
BraA06t24842Z Brassica rapa
BraA08t34830Z Brassica rapa
C03p04550 Brassica napus
C05p20280 Brassica napus
C08p20810 Brassica napus
CAN.G1156.47 Capsicum annuum
CAN.G1156.48 Capsicum annuum
CAN.G186.78 Capsicum annuum
CAN.G198.14 Capsicum annuum
CAN.G226.13 Capsicum annuum
CAN.G319.11 Capsicum annuum
CAN.G319.12 Capsicum annuum
CAN.G388.73 Capsicum annuum
CAN.G46.33 Capsicum annuum
CAN.G78.45 Capsicum annuum
CARHR021790 Cardamine hirsuta
CARHR204100 Cardamine hirsuta
CARHR204110 Cardamine hirsuta
Carub.0001s2082 Capsella rubella
Carub.0006s0785 Capsella rubella
Ca_16634_v3 Cicer arietinum L.
Cc07_g18640 Coffea canephora
Cc07_g18650 Coffea canephora
Cc10_g13270 Coffea canephora
CDE06G0647 Ceratophyllum demersum
Cfa002864 Carpinus fangiana
Cfa002906 Carpinus fangiana
Cfa018398 Carpinus fangiana
Ciclev10000963m.g Citrus clementina
Ciclev10001030m.g Citrus clementina
CiPaw.03G120500 Carya illinoinensis
CiPaw.04G084600 Carya illinoinensis
CiPaw.15G024200 Carya illinoinensis
ClCG01G015350 Citrullus lanatus
ClCG08G003330 Citrullus lanatus
COL.COLO4_35763 Corchorus olitorius
COL.COLO4_38145 Corchorus olitorius
COL.COLO4_38146 Corchorus olitorius
Cpa.g.sc26.70 Carica papaya
Cpa.g.sc42.166 Carica papaya
Cre12.g539900 Chlamydomonas reinhardtii
CsaV3_6G034530 Cucumis sativus L.
CsaV3_6G041570 Cucumis sativus L.
CSS0005201 Camellia sinensis var. sinensis
CSS0022049 Camellia sinensis var. sinensis
DCAR_001207 Daucus carota
DCAR_014112 Daucus carota
DCAR_014113 Daucus carota
Dinv24379 Davidia involucrata
Dinv25775 Davidia involucrata
Duzib041G0696 Durio zibethinus
Duzib093G1399 Durio zibethinus
Duzib093G1801 Durio zibethinus
Duzib264G1132 Durio zibethinus
ECA246G3750 Erigeron canadensis
ECA248G2158 Erigeron canadensis
EL10Ac1g01406 Beta vulgaris
EL10Ac2g03186 Beta vulgaris
Eucgr.F02765 Eucalyptus grandis
Eucgr.I00194 Eucalyptus grandis
FAN19G1498 Fragaria x ananassa
FAN23G2713 Fragaria x ananassa
FAN26G1103 Fragaria x ananassa
FAN28G0843 Fragaria x ananassa
FvH4_1g24490 Fragaria vesca
Glyma.04G212100 Glycine max
Glyma.04G243000 Glycine max
Glyma.06G120300 Glycine max
Glyma.06G154300 Glycine max
Gohir.A02G069000 Gossypium hirsutum
Gohir.A05G240400 Gossypium hirsutum
Gohir.A05G240500 Gossypium hirsutum
Gohir.A05G383600 Gossypium hirsutum
Gohir.D02G075700 Gossypium hirsutum
Gohir.D04G031700 Gossypium hirsutum
Gohir.D05G241600 Gossypium hirsutum
Gorai.005G085000 Gossypium raimondii
Gorai.009G251000 Gossypium raimondii
Gorai.012G036000 Gossypium raimondii
GSVIVG01009978001 Vitis vinifera
GSVIVG01024829001 Vitis vinifera
GSVIVG01026470001 Vitis vinifera
HanXRQChr01g0018981 Helianthus annuus
HanXRQChr01g0019001 Helianthus annuus
HanXRQChr05g0160481 Helianthus annuus
HanXRQChr05g0160501 Helianthus annuus
HanXRQChr08g0232391 Helianthus annuus
Haze_17668 Corylus avellana
Haze_25182 Corylus avellana
Haze_25259 Corylus avellana
Haze_27180 Corylus avellana
Hma1.2p1_0107F.1_g051210 Hydrangea macrophylla
HPP92_027073 Vanilla planifolia
Hund04428 Selenicereus undatus
Hund17371 Selenicereus undatus
Hund26763 Selenicereus undatus
Lalb_Chr08g0240911 Lupinus albus
Lalb_Chr11g0068511 Lupinus albus
Lj1g0013209 Lotus japonicus
Lj1g0024399 Lotus japonicus
Lj2A607T36 Lonicera japonica
Lj7A357T25 Lonicera japonica
Lsat_1_v5_gn_1_81840 Lactuca sativa
Lsat_1_v5_gn_1_9280 Lactuca sativa
Manes.02G172400 Manihot esculenta
Manes.12G156700 Manihot esculenta
Mapoly0006s0123 Marchantia polymorpha
Mapoly0027s0073 Marchantia polymorpha
MBI06_g27447_MAGBIO Magnolia biondii
MD01G1005600 Malus domestica
MD15G1133900 Malus domestica
Medtr3g088845 Medicago truncatula
Medtr3g096390 Medicago truncatula
Medtr8g075470 Medicago truncatula
MELO3C008063.2 Cucumis melo
MELO3C011705.2 Cucumis melo
Migut.C01090 Erythranthe guttata
Migut.H00693 Erythranthe guttata
MSTRG.23463 Avicennia marina
Nitab4.5_0000174g0040 Nicotiana tabacum
Nitab4.5_0000496g0100 Nicotiana tabacum
Nitab4.5_0001530g0070 Nicotiana tabacum
Nitab4.5_0001530g0080 Nicotiana tabacum
Nitab4.5_0004010g0030 Nicotiana tabacum
Nitab4.5_0004515g0020 Nicotiana tabacum
Nitab4.5_0006981g0030 Nicotiana tabacum
Nitab4.5_0007176g0020 Nicotiana tabacum
Nitab4.5_0008290g0050 Nicotiana tabacum
Nitab4.5_0009134g0010 Nicotiana tabacum
Nitab4.5_0015800g0010 Nicotiana tabacum
Nitab4.5_0016755g0010 Nicotiana tabacum
Nn1g06287 Nelumbo nucifera
Nn5g28511 Nelumbo nucifera
Oeu004237.1 Olea europaea
Oeu015105.2 Olea europaea
Os12g0183100 Oryza sativa ssp. japonica
Peaxi162Scf00066g01121 Petunia axillaris
Peaxi162Scf00066g01129 Petunia axillaris
Peaxi162Scf00525g00110 Petunia axillaris
Peaxi162Scf01184g00015 Petunia axillaris
Peaxi162Scf01184g00146 Petunia axillaris
PGR042G1593 Punica granatum
PGR119G1133 Punica granatum
PGSC0003DMG400004998 Solanum tuberosum
PGSC0003DMG400013029 Solanum tuberosum
PGSC0003DMG400024860 Solanum tuberosum
PGSC0003DMG402023446 Solanum tuberosum
Phvul.009G132900 Phaseolus vulgaris
Phvul.009G156400 Phaseolus vulgaris
Potri.002G074900 Populus trichocarpa
Potri.005G064000 Populus trichocarpa
Potri.005G185400 Populus trichocarpa
Pp3c7_4810 Physcomitrium patens
Prupe.4G272100 Prunus persica
Psat5g061560 Pisum sativum
Psat5g083520 Pisum sativum
PSO170G4855 Papaver somniferum
PSO528G0082 Papaver somniferum
QL06p051903 Quercus lobata
QL09p029611 Quercus lobata
QL10p043417 Quercus lobata
RcHm_v2.0_Chr2g0121671 Rosa chinensis
RcHm_v2.0_Chr2g0121681 Rosa chinensis
RcHm_v2.0_Chr2g0121691 Rosa chinensis
RcHm_v2.0_Chr2g0121741 Rosa chinensis
RcHm_v2.0_Chr2g0121751 Rosa chinensis
Rhsim02G0095700 Rhododendron simsii
Rhsim08G0002200 Rhododendron simsii
Rhsim11G0074800 Rhododendron simsii
Rhsim11G0074900 Rhododendron simsii
Sabra02G0058500 Salix brachista
Sabra05G0053300 Salix brachista
Sabra05G0141700 Salix brachista
SalBow1G0742 Salvia bowleyana
SalBow1G3281 Salvia bowleyana
SalBow1G4669 Salvia bowleyana
SalBow7G2686 Salvia bowleyana
Sc02g0004600 Simmondsia chinensis
Sc03g0006040 Simmondsia chinensis
Sed0000431 Sechium edule
Sed0006874 Sechium edule
Sed0025264 Sechium edule
SEGI_07053 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09038 Striga asiatica
SGA_v2.0_scaffold48G17921 Striga asiatica
SMO119G0269 Selaginella moellendorffii
Solyc04g025710.3 Solanum lycopersicum
Solyc04g063350.3 Solanum lycopersicum
Solyc05g056480.3 Solanum lycopersicum
Solyc06g059840.4 Solanum lycopersicum
Solyc06g059850.2 Solanum lycopersicum
Solyc10g052820.1 Solanum lycopersicum
Solyc12g055880.3 Solanum lycopersicum
Solyc12g055890.3 Solanum lycopersicum
Sopen04g026230 Solanum pennellii
Sopen04g026240 Solanum pennellii
Sopen04g026270 Solanum pennellii
Sopen05g034880 Solanum pennellii
Sopen06g019920 Solanum pennellii
Sopen06g019930 Solanum pennellii
Sopen12g024370 Solanum pennellii
Sp1g18950 Schrenkiella parvula
Sp6g34020 Schrenkiella parvula
TAR628G0895 Trochodendron aralioides
THA.LOC104812058 Tarenaya hassleriana
THA.LOC104818428 Tarenaya hassleriana
Thecc.01G134100 Theobroma cacao
Thecc.08G137800 Theobroma cacao
Thecc.08G137900 Theobroma cacao
Thhalv10007543m.g Eutrema salsugineum
Thhalv10013452m.g Eutrema salsugineum
TPR.G22213 Trifolium pratense
TPR.G6309 Trifolium pratense
TWI60G0417 Tripterygium wilfordii
TWI79G1148 Tripterygium wilfordii
unitig_27.g25342 Utricularia gibba
unitig_749.g13924 Utricularia gibba
vmacro00877 Vaccinium macrocarpon
vmacro00950 Vaccinium macrocarpon
vmacro18672 Vaccinium macrocarpon
VMungo0464G1606 Vigna mungo
VMungo1309G0701 Vigna mungo
VMungo1309G2524 Vigna mungo
Zm00001eb409040 Zea mays

User provided reference genes

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