Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p05620 Brassica napus
A10p20160 Brassica napus
Aa31LG1G8900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4367 Anthoceros agrestis
Actinidia08498 Actinidia chinensis
Actinidia25697 Actinidia chinensis
Actinidia27166 Actinidia chinensis
Actinidia27568 Actinidia chinensis
Actinidia36969 Actinidia chinensis
AL6G31040 Arabidopsis lyrata
Aqoxy2G03371 Aquilegia oxysepala
Aqoxy5G02724 Aquilegia oxysepala
Aqoxy7G04113 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5X5R33 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94CY91 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C8EBC8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EK8P71 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H7YNGJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ITJF75 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5VP66 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PVFB8V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ST9KYG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UTU5E4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W4T2DM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WG4WWJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WKN0A4 Arachis hypogaea
AT5G19530 Arabidopsis thaliana
ATR0332G020 Amborella trichopoda
ATR0598G197 Amborella trichopoda
Atru.chr4.2497 Acer truncatum
Atru.chr7.1861 Acer truncatum
AUR62009091 Chenopodium quinoa
AUR62020579 Chenopodium quinoa
AUR62038613 Chenopodium quinoa
BcaB05g23386 Brassica carinata
BcaC03g13684 Brassica carinata
BcaC04g24217 Brassica carinata
BcaC04g24219 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p02330 Brassica napus
BolC2t06963H Brassica oleracea
BolC9t58528H Brassica oleracea
BolC9t58529H Brassica oleracea
BraA02t05514Z Brassica rapa
BraA10t44089Z Brassica rapa
C09p56710 Brassica napus
C09p56730 Brassica napus
CAN.G157.6 Capsicum annuum
CAN.G157.7 Capsicum annuum
CAN.G6.35 Capsicum annuum
CAN.G907.12 Capsicum annuum
CANSAT25G1641 Cannabis sativa
CANSAT78G1827 Cannabis sativa
CARHR193370 Cardamine hirsuta
Carub.0004s0596 Capsella rubella
Carub.0006s1788 Capsella rubella
Ca_13106_v3 Cicer arietinum L.
Ca_24393_v3 Cicer arietinum L.
Ca_26639_v3 Cicer arietinum L.
Cc03_g03610 Coffea canephora
Cc08_g01290 Coffea canephora
CDE05G0812 Ceratophyllum demersum
CDE05G2946 Ceratophyllum demersum
Cfa015628 Carpinus fangiana
Cfa018011 Carpinus fangiana
Ciclev10005374m.g Citrus clementina
Ciclev10008847m.g Citrus clementina
CiPaw.01G165000 Carya illinoinensis
CiPaw.02G096300 Carya illinoinensis
CiPaw.15G092500 Carya illinoinensis
ClCG05G005220 Citrullus lanatus
ClCG08G009870 Citrullus lanatus
ClCG11G001520 Citrullus lanatus
COL.COLO4_21124 Corchorus olitorius
COL.COLO4_34231 Corchorus olitorius
Cpa.g.sc126.36 Carica papaya
Cpa.g.sc58.122 Carica papaya
Cre06.g251500 Chlamydomonas reinhardtii
CsaV3_2G001250 Cucumis sativus L.
CsaV3_3G013410 Cucumis sativus L.
CsaV3_6G031960 Cucumis sativus L.
CSS0000726 Camellia sinensis var. sinensis
CSS0006042 Camellia sinensis var. sinensis
CSS0027314 Camellia sinensis var. sinensis
DCAR_000821 Daucus carota
DCAR_027204 Daucus carota
DCAR_027208 Daucus carota
Dinv08517 Davidia involucrata
Dinv13983 Davidia involucrata
Dinv44518 Davidia involucrata
Duzib052G1080 Durio zibethinus
Duzib168G0561 Durio zibethinus
Duzib187G0726 Durio zibethinus
ECA234G4047 Erigeron canadensis
ECA236G4523 Erigeron canadensis
EL10Ac2g03797 Beta vulgaris
EL10Ac3g06430 Beta vulgaris
Eucgr.C03148 Eucalyptus grandis
Eucgr.H03531 Eucalyptus grandis
FAN07G1266 Fragaria x ananassa
FAN12G2098 Fragaria x ananassa
FAN15G2560 Fragaria x ananassa
FAN17G0826 Fragaria x ananassa
FAN19G1214 Fragaria x ananassa
FAN20G1005 Fragaria x ananassa
FAN22G1222 Fragaria x ananassa
FAN23G2397 Fragaria x ananassa
FAN24G1185 Fragaria x ananassa
FAN26G0169 Fragaria x ananassa
FAN26G2969 Fragaria x ananassa
FAN27G2492 Fragaria x ananassa
FAN27G2982 Fragaria x ananassa
FAN28G2431 Fragaria x ananassa
FvH4_1g08290 Fragaria vesca
FvH4_2g31200 Fragaria vesca
FvH4_3g30430 Fragaria vesca
FvH4_4g15320 Fragaria vesca
Glyma.10G248800 Glycine max
Glyma.14G099200 Glycine max
Glyma.15G174000 Glycine max
Glyma.17G225500 Glycine max
Glyma.20G145000 Glycine max
Gohir.A06G082700 Gossypium hirsutum
Gohir.D06G083601 Gossypium hirsutum
Gorai.010G097100 Gossypium raimondii
GSVIVG01017948001 Vitis vinifera
GSVIVG01035450001 Vitis vinifera
HanXRQChr02g0044301 Helianthus annuus
HanXRQChr10g0296421 Helianthus annuus
HanXRQChr10g0296441 Helianthus annuus
Haze_00915 Corylus avellana
Haze_18117 Corylus avellana
Hma1.2p1_0231F.1_g097420 Hydrangea macrophylla
Hma1.2p1_0745F.1_g212000 Hydrangea macrophylla
HPP92_017532 Vanilla planifolia
HPP92_019326 Vanilla planifolia
Hund12141 Selenicereus undatus
Hund19427 Selenicereus undatus
Lalb_Chr02g0140551 Lupinus albus
Lalb_Chr11g0063311 Lupinus albus
Lalb_Chr14g0375561 Lupinus albus
Lalb_Chr24g0393621 Lupinus albus
Lj1g0010256 Lotus japonicus
Lj3C738T14 Lonicera japonica
Lj5g0016747 Lotus japonicus
Lj5g0025896 Lotus japonicus
Lj6A600T32 Lonicera japonica
Lj8A482T26 Lonicera japonica
Lsat_1_v5_gn_5_148780 Lactuca sativa
Lsat_1_v5_gn_8_111221 Lactuca sativa
Manes.03G052500 Manihot esculenta
Manes.15G028000 Manihot esculenta
Manes.16G084600 Manihot esculenta
Mapoly0012s0100 Marchantia polymorpha
MBI01_g45396_MAGBIO Magnolia biondii
MBI13_g11357_MAGBIO Magnolia biondii
MD08G1070200 Malus domestica
MD13G1191500 Malus domestica
MD15G1052000 Malus domestica
MD16G1191600 Malus domestica
Medtr1g015300 Medicago truncatula
Medtr3g032400 Medicago truncatula
Medtr3g104960 Medicago truncatula
Medtr5g006140 Medicago truncatula
MELO3C004644.2 Cucumis melo
MELO3C006538.2 Cucumis melo
MELO3C011484.2 Cucumis melo
Migut.A00087 Erythranthe guttata
Migut.G00329 Erythranthe guttata
MSTRG.11638 Avicennia marina
MSTRG.1706 Avicennia marina
MSTRG.25980 Avicennia marina
MSTRG.4024 Avicennia marina
Nitab4.5_0000043g0300 Nicotiana tabacum
Nitab4.5_0001488g0130 Nicotiana tabacum
Nitab4.5_0002946g0040 Nicotiana tabacum
Nitab4.5_0009678g0010 Nicotiana tabacum
Nitab4.5_0014268g0010 Nicotiana tabacum
Nitab4.5_0021288g0010 Nicotiana tabacum
Nn4g26294 Nelumbo nucifera
Nn8g38708 Nelumbo nucifera
Oeu003977.1 Olea europaea
Oeu022784.1 Olea europaea
Oeu047078.1 Olea europaea
Os02g0237100 Oryza sativa ssp. japonica
Peaxi162Scf00092g01413 Petunia axillaris
Peaxi162Scf00101g01413 Petunia axillaris
PGR004G0118 Punica granatum
PGR044G0628 Punica granatum
PGSC0003DMG400019564 Solanum tuberosum
PGSC0003DMG400031835 Solanum tuberosum
Phvul.001G039100 Phaseolus vulgaris
Phvul.007G056100 Phaseolus vulgaris
Potri.006G222200 Populus trichocarpa
Potri.008G151800 Populus trichocarpa
Potri.010G089200 Populus trichocarpa
Pp3c16_1090 Physcomitrium patens
Pp3c27_3260 Physcomitrium patens
Pp3c5_6270 Physcomitrium patens
Pp3c5_81 Physcomitrium patens
Pp3c6_27380 Physcomitrium patens
PRCOL_00006162 Prasinoderma coloniale
Prupe.1G011700 Prunus persica
Prupe.1G405900 Prunus persica
Prupe.7G202400 Prunus persica
Psat2g129160 Pisum sativum
Psat4g210720 Pisum sativum
Psat4g210760 Pisum sativum
Psat6g022400 Pisum sativum
PSO210G4099 Papaver somniferum
PSO210G6377 Papaver somniferum
PSO210G6904 Papaver somniferum
PSO761G0466 Papaver somniferum
QL02p000171 Quercus lobata
QL06p002973 Quercus lobata
RcHm_v2.0_Chr2g0094361 Rosa chinensis
RcHm_v2.0_Chr4g0416531 Rosa chinensis
RcHm_v2.0_Chr6g0311611 Rosa chinensis
Rhsim04G0206500 Rhododendron simsii
Sabra06G0171900 Salix brachista
Sabra08G0115600 Salix brachista
Sabra10G0054100 Salix brachista
SalBow1G0957 Salvia bowleyana
SalBow2G3342 Salvia bowleyana
SalBow4G3288 Salvia bowleyana
Sc19g0004240 Simmondsia chinensis
Sc23g0004230 Simmondsia chinensis
Sed0011327 Sechium edule
Sed0012313 Sechium edule
Sed0013204 Sechium edule
Sed0025383 Sechium edule
SEGI_24094 Sequoiadendron giganteum
SEGI_27096 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09175 Striga asiatica
SGA_v2.0_scaffold257G45725 Striga asiatica
SGA_v2.0_scaffold64G21863 Striga asiatica
SMO304G0079 Selaginella moellendorffii
SMO367G0932 Selaginella moellendorffii
Solyc07g041300.2 Solanum lycopersicum
Solyc08g061970.3 Solanum lycopersicum
Solyc09g075900.3 Solanum lycopersicum
Sopen07g020610 Solanum pennellii
Sopen08g017510 Solanum pennellii
Sopen09g030700 Solanum pennellii
Sp6g24850 Schrenkiella parvula
TAR362G0781 Trochodendron aralioides
TAR374G1205 Trochodendron aralioides
TAR383G0854 Trochodendron aralioides
TAR479G0003 Trochodendron aralioides
TAR501G0002 Trochodendron aralioides
TAR623G1233 Trochodendron aralioides
TAR624G0926 Trochodendron aralioides
TAR629G3146 Trochodendron aralioides
TAR636G1820 Trochodendron aralioides
THA.LOC104811216 Tarenaya hassleriana
Thecc.04G229300 Theobroma cacao
Thecc.09G061700 Theobroma cacao
Thhalv10002037m.g Eutrema salsugineum
Thhalv10013833m.g Eutrema salsugineum
TPR.G3589 Trifolium pratense
TPR.G37869 Trifolium pratense
TPR.G38849 Trifolium pratense
TWI09G1165 Tripterygium wilfordii
TWI53G0823 Tripterygium wilfordii
TWI63G1759 Tripterygium wilfordii
unitig_0.g2737 Utricularia gibba
unitig_748.g7143 Utricularia gibba
VMungo0647G2468 Vigna mungo
VMungo0720G0384 Vigna mungo

User provided reference genes

Program Settings