Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p15820 Brassica napus
A02p01410 Brassica napus
A02p05520 Brassica napus
Aa31LG1G8790 Aethionema arabicum
Aa31LG3G15100 Aethionema arabicum
Aa31LG4G9570 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1490 Anthoceros agrestis
Actinidia10271 Actinidia chinensis
Actinidia11657 Actinidia chinensis
Actinidia14241 Actinidia chinensis
Actinidia19249 Actinidia chinensis
Actinidia28252 Actinidia chinensis
Actinidia33567 Actinidia chinensis
Ah.06g194650 Amaranthus hybridus
Ah.16g109590 Amaranthus hybridus
AL6G22940 Arabidopsis lyrata
AL6G30870 Arabidopsis lyrata
AL7G28760 Arabidopsis lyrata
Aqoxy2G00393 Aquilegia oxysepala
Aqoxy6G00823 Aquilegia oxysepala
Aqoxy6G02500 Aquilegia oxysepala
Aqoxy6G02501 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4CPP5V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DP8IJC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DUIQ94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F3S5WR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RFG9X9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TX8F6J Arachis hypogaea
AT4G24460 Arabidopsis thaliana
AT5G12170 Arabidopsis thaliana
AT5G19380 Arabidopsis thaliana
ATR0499G012 Amborella trichopoda
ATR0767G127 Amborella trichopoda
Atru.chr13.986 Acer truncatum
Atru.chr3.2950 Acer truncatum
Atru.chr3.2959 Acer truncatum
AUR62000201 Chenopodium quinoa
AUR62006549 Chenopodium quinoa
AUR62019111 Chenopodium quinoa
BcaB03g12678 Brassica carinata
BcaB07g30273 Brassica carinata
BcaC03g13672 Brassica carinata
BcaC09g50866 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p02500 Brassica napus
BNapus_Darmor_BZH_scaffold_38p02540 Brassica napus
BolC1t01905H Brassica oleracea
BolC2t06509H Brassica oleracea
BraA01t01517Z Brassica rapa
BraA02t05120Z Brassica rapa
BraA02t05503Z Brassica rapa
C01p19770 Brassica napus
C02p05650 Brassica napus
CAN.G193.5 Capsicum annuum
CAN.G375.33 Capsicum annuum
CAN.G575.94 Capsicum annuum
CANSAT25G1663 Cannabis sativa
CANSAT54G0172 Cannabis sativa
CARHR193580 Cardamine hirsuta
CARHR200960 Cardamine hirsuta
CARHR231850 Cardamine hirsuta
Carub.0006s1067 Capsella rubella
Carub.0006s1772 Capsella rubella
Carub.0007s1661 Capsella rubella
Ca_06198_v3 Cicer arietinum L.
Ca_14730_v3 Cicer arietinum L.
Ca_16022_v3 Cicer arietinum L.
Cc00_g10200 Coffea canephora
Cc10_g08530 Coffea canephora
CDE05G3680 Ceratophyllum demersum
CDE06G1098 Ceratophyllum demersum
CDE08G0219 Ceratophyllum demersum
Cfa009880 Carpinus fangiana
Ciclev10000856m.g Citrus clementina
Ciclev10017793m.g Citrus clementina
CiPaw.07G163400 Carya illinoinensis
CiPaw.14G112100 Carya illinoinensis
ClCG02G022820 Citrullus lanatus
ClCG08G011570 Citrullus lanatus
COL.COLO4_32808 Corchorus olitorius
COL.COLO4_35272 Corchorus olitorius
Cpa.g.sc1556.3 Carica papaya
Cpa.g.sc157.58 Carica papaya
Cre01.g030300 Chlamydomonas reinhardtii
CsaV3_2G030150 Cucumis sativus L.
CsaV3_6G038950 Cucumis sativus L.
CSS0017465 Camellia sinensis var. sinensis
CSS0028988 Camellia sinensis var. sinensis
CSS0039559 Camellia sinensis var. sinensis
DCAR_012851 Daucus carota
DCAR_024403 Daucus carota
DCAR_024404 Daucus carota
Dinv36155 Davidia involucrata
Dinv44874 Davidia involucrata
Duzib116G0568 Durio zibethinus
Duzib147G0375 Durio zibethinus
Duzib168G2203 Durio zibethinus
ECA248G2936 Erigeron canadensis
EL10Ac1g00488 Beta vulgaris
EL10Ac4g10110 Beta vulgaris
Eucgr.F02159 Eucalyptus grandis
Eucgr.J00689 Eucalyptus grandis
FAN04G1539 Fragaria x ananassa
FAN08G0701 Fragaria x ananassa
FAN08G1009 Fragaria x ananassa
FAN18G1806 Fragaria x ananassa
FAN18G2880 Fragaria x ananassa
FvH4_5g34370 Fragaria vesca
Glyma.02G279050 Glycine max
Glyma.04G096800 Glycine max
Glyma.06G098600 Glycine max
Glyma.07G232500 Glycine max
Glyma.14G035600 Glycine max
Glyma.20G041200 Glycine max
Gohir.A05G218600 Gossypium hirsutum
Gohir.A09G110501 Gossypium hirsutum
Gohir.A13G218500 Gossypium hirsutum
Gohir.D05G221300 Gossypium hirsutum
Gohir.D09G106860 Gossypium hirsutum
Gohir.D09G106920 Gossypium hirsutum
Gohir.D09G106980 Gossypium hirsutum
Gohir.D13G222200 Gossypium hirsutum
Gorai.006G124500 Gossypium raimondii
Gorai.009G228500 Gossypium raimondii
Gorai.013G253300 Gossypium raimondii
GSVIVG01009201001 Vitis vinifera
GSVIVG01037291001 Vitis vinifera
HanXRQChr06g0182511 Helianthus annuus
HanXRQChr09g0246341 Helianthus annuus
Haze_22484 Corylus avellana
Haze_23245 Corylus avellana
Hma1.2p1_0010F.1_g006530 Hydrangea macrophylla
Hma1.2p1_0460F.1_g157420 Hydrangea macrophylla
HPP92_006731 Vanilla planifolia
HPP92_020404 Vanilla planifolia
Hund21975 Selenicereus undatus
Hund26824 Selenicereus undatus
Lalb_Chr04g0249251 Lupinus albus
Lalb_Chr11g0064871 Lupinus albus
Lalb_Chr11g0064881 Lupinus albus
Lj1A278G60 Lonicera japonica
Lj1C278T17 Lonicera japonica
Lj1g0009324 Lotus japonicus
Lj4A740T31 Lonicera japonica
Lj6g0021604 Lotus japonicus
LjContig00564g0011816 Lotus japonicus
Lsat_1_v5_gn_2_32000 Lactuca sativa
Lsat_1_v5_gn_9_76941 Lactuca sativa
Manes.02G138800 Manihot esculenta
Manes.18G056700 Manihot esculenta
Mapoly0007s0242 Marchantia polymorpha
Mapoly0111s0037 Marchantia polymorpha
MBI16_g06008_MAGBIO Magnolia biondii
MBI19_g28781_MAGBIO Magnolia biondii
MBI19_g44246_MAGBIO Magnolia biondii
MBI19_g45517_MAGBIO Magnolia biondii
MD02G1042100 Malus domestica
MD03G1165200 Malus domestica
MD08G1202100 Malus domestica
MD08G1202300 Malus domestica
MD08G1202700 Malus domestica
MD08G1202800 Malus domestica
Medtr0028s0090 Medicago truncatula
Medtr3g099780 Medicago truncatula
Medtr5g089340 Medicago truncatula
MELO3C011074.2 Cucumis melo
MELO3C014559.2 Cucumis melo
Migut.D00667 Erythranthe guttata
Migut.N02840 Erythranthe guttata
Migut.N02841 Erythranthe guttata
Migut.N02844 Erythranthe guttata
Migut.N02845 Erythranthe guttata
Migut.N02852 Erythranthe guttata
Migut.N02853 Erythranthe guttata
MSTRG.21344 Avicennia marina
MSTRG.22180 Avicennia marina
MSTRG.24423 Avicennia marina
Nitab4.5_0000131g0030 Nicotiana tabacum
Nitab4.5_0002310g0100 Nicotiana tabacum
Nitab4.5_0005345g0050 Nicotiana tabacum
Nitab4.5_0014713g0010 Nicotiana tabacum
Nn5g29831 Nelumbo nucifera
Nn7g36740 Nelumbo nucifera
Nn7g36742 Nelumbo nucifera
Oeu025909.4 Olea europaea
Oeu038174.2 Olea europaea
Oeu061704.1 Olea europaea
Oeu061705.1 Olea europaea
Oeu061706.1 Olea europaea
Os01g0955700 Oryza sativa ssp. japonica
Os03g0199000 Oryza sativa ssp. japonica
Os12g0511300 Oryza sativa ssp. japonica
Peaxi162Scf00062g00056 Petunia axillaris
Peaxi162Scf00174g00222 Petunia axillaris
Peaxi162Scf01112g00134 Petunia axillaris
PGR031G3127 Punica granatum
PGR119G2227 Punica granatum
PGSC0003DMG400009333 Solanum tuberosum
PGSC0003DMG402004716 Solanum tuberosum
Phvul.006G014700 Phaseolus vulgaris
Phvul.008G201700 Phaseolus vulgaris
Phvul.009G035000 Phaseolus vulgaris
Potri.009G069400 Populus trichocarpa
Pp3c5_8390 Physcomitrium patens
Pp3c6_18950 Physcomitrium patens
Prupe.1G535300 Prunus persica
Prupe.4G263900 Prunus persica
Psat0s976g0040 Pisum sativum
Psat2g020760 Pisum sativum
Psat5g049600 Pisum sativum
PSO339G5031 Papaver somniferum
PSO384G4866 Papaver somniferum
PSO675G8490 Papaver somniferum
QL01p016997 Quercus lobata
QL09p018373 Quercus lobata
RcHm_v2.0_Chr7g0234941 Rosa chinensis
RcHm_v2.0_Chr7g0234951 Rosa chinensis
RcHm_v2.0_Chr7g0234961 Rosa chinensis
Rhsim01G0195400 Rhododendron simsii
Rhsim05G0206000 Rhododendron simsii
Sabra09G0052300 Salix brachista
SalBow2G1983 Salvia bowleyana
SalBow2G3258 Salvia bowleyana
SalBow6G1120 Salvia bowleyana
SalBow6G1800 Salvia bowleyana
SalBow7G1421 Salvia bowleyana
Sc09g0001030 Simmondsia chinensis
Sed0013990 Sechium edule
Sed0022124 Sechium edule
SEGI_24624 Sequoiadendron giganteum
SEGI_31873 Sequoiadendron giganteum
SGA_v2.0_scaffold29G12229 Striga asiatica
SGA_v2.0_scaffold48G17865 Striga asiatica
SGA_v2.0_scaffold48G17877 Striga asiatica
SMO117G0306 Selaginella moellendorffii
Solyc04g076570.4 Solanum lycopersicum
Solyc12g099810.2 Solanum lycopersicum
Sopen04g030290 Solanum pennellii
Sopen12g034440 Solanum pennellii
Sp6g25030 Schrenkiella parvula
Sp6g31470 Schrenkiella parvula
Sp7g22440 Schrenkiella parvula
TAR628G0620 Trochodendron aralioides
TAR633G1491 Trochodendron aralioides
THA.LOC104815468 Tarenaya hassleriana
Thecc.08G073400 Theobroma cacao
Thecc.09G247700 Theobroma cacao
Thhalv10015536m.g Eutrema salsugineum
Thhalv10015653m.g Eutrema salsugineum
Thhalv10025263m.g Eutrema salsugineum
TPR.G16430 Trifolium pratense
TPR.G24373 Trifolium pratense
TPR.G6355 Trifolium pratense
TWI56G0738 Tripterygium wilfordii
TWI75G0164 Tripterygium wilfordii
TWI79G0380 Tripterygium wilfordii
vmacro12391 Vaccinium macrocarpon
vmacro14277 Vaccinium macrocarpon
vmacro21251 Vaccinium macrocarpon
vmacro21358 Vaccinium macrocarpon
VMungo0540G0164 Vigna mungo
VMungo0540G0845 Vigna mungo
VMungo0647G1809 Vigna mungo
VMungo1309G2804 Vigna mungo
Zm00001eb140590 Zea mays
Zm00001eb264550 Zea mays
Zm00001eb319740 Zea mays
Zm00001eb362700 Zea mays
Zm00001eb400930 Zea mays

User provided reference genes

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