Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p03010 Brassica napus
A05p26260 Brassica napus
A06p37790 Brassica napus
A07p20840 Brassica napus
A09p05120 Brassica napus
Aa31LG11G8810 Aethionema arabicum
Aa31LG8G9050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2752 Anthoceros agrestis
Actinidia33839 Actinidia chinensis
Actinidia36955 Actinidia chinensis
Ah.02g122140 Amaranthus hybridus
AL3G36820 Arabidopsis lyrata
AL6G40160 Arabidopsis lyrata
Aqoxy1G03767 Aquilegia oxysepala
Aqoxy2G03402 Aquilegia oxysepala
Aqoxy3G00616 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2EE7P6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2T97DK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.418MG4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4HTT8H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A0H8UL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C65CX3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DGU1VQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EKEG73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G3F6T9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GGZ045 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X80BEN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X8ZYJE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9ULGB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y01NVN Arachis hypogaea
AT3G22510 Arabidopsis thaliana
AT5G27990 Arabidopsis thaliana
ATR0697G145 Amborella trichopoda
ATR0730G133 Amborella trichopoda
Atru.chr2.663 Acer truncatum
Atru.chr4.2452 Acer truncatum
AUR62000960 Chenopodium quinoa
AUR62005008 Chenopodium quinoa
AUR62032153 Chenopodium quinoa
AUR62036909 Chenopodium quinoa
AUR62039687 Chenopodium quinoa
AUR62042964 Chenopodium quinoa
BcaB04g19649 Brassica carinata
BcaB06g26360 Brassica carinata
BcaC04g23704 Brassica carinata
BcaC04g23706 Brassica carinata
BcaC05g28045 Brassica carinata
BcaNung04257 Brassica carinata
BolC5t32805H Brassica oleracea
BolC5t32819H Brassica oleracea
BolC7t44579H Brassica oleracea
BolC9t53482H Brassica oleracea
BraA05t21501Z Brassica rapa
BraA06t24789Z Brassica rapa
BraA06t25802Z Brassica rapa
BraA06t26698Z Brassica rapa
BraA07t31059Z Brassica rapa
BraA08t33207Z Brassica rapa
BraA09t36151Z Brassica rapa
C05p40660 Brassica napus
C05p40740 Brassica napus
C07p40440 Brassica napus
C09p05530 Brassica napus
CAN.G134.40 Capsicum annuum
CANSAT54G0996 Cannabis sativa
CANSAT78G1692 Cannabis sativa
CARHR098400 Cardamine hirsuta
CARHR185680 Cardamine hirsuta
Carub.0003s2267 Capsella rubella
Carub.0006s2547 Capsella rubella
Ca_23953_v3 Cicer arietinum L.
Ca_23959_v3 Cicer arietinum L.
Cc03_g03880 Coffea canephora
Cc06_g23700 Coffea canephora
CDE02G3900 Ceratophyllum demersum
CDE08G1586 Ceratophyllum demersum
Ciclev10002511m.g Citrus clementina
Ciclev10006772m.g Citrus clementina
CiPaw.01G167200 Carya illinoinensis
CiPaw.07G007900 Carya illinoinensis
CiPaw.08G178400 Carya illinoinensis
ClCG05G005150 Citrullus lanatus
ClCG05G009860 Citrullus lanatus
ClCG11G014280 Citrullus lanatus
COL.COLO4_00267 Corchorus olitorius
COL.COLO4_15255 Corchorus olitorius
COL.COLO4_21488 Corchorus olitorius
Cpa.g.sc114.63 Carica papaya
Cre10.g426250 Chlamydomonas reinhardtii
CsaV3_3G047670 Cucumis sativus L.
CSS0013639 Camellia sinensis var. sinensis
CSS0043802 Camellia sinensis var. sinensis
CSS0050505 Camellia sinensis var. sinensis
DCAR_018312 Daucus carota
DCAR_024166 Daucus carota
Dinv02597 Davidia involucrata
Dinv02599 Davidia involucrata
Dinv05119 Davidia involucrata
Dinv14000 Davidia involucrata
Duzib128G1976 Durio zibethinus
Duzib212G0919 Durio zibethinus
ECA236G0123 Erigeron canadensis
ECA236G2527 Erigeron canadensis
ECA238G0509 Erigeron canadensis
EL10Ac3g07204 Beta vulgaris
EL10Ac9g22431 Beta vulgaris
Eucgr.H04397 Eucalyptus grandis
FAN08G0687 Fragaria x ananassa
FAN09G2690 Fragaria x ananassa
FAN13G2107 Fragaria x ananassa
FAN18G2811 Fragaria x ananassa
FvH4_5g30310 Fragaria vesca
FvH4_6g52702 Fragaria vesca
Glyma.01G237600 Glycine max
Glyma.08G279500 Glycine max
Glyma.13G169100 Glycine max
Glyma.18G147100 Glycine max
Glyma.19G009300 Glycine max
Gohir.A09G056400 Gossypium hirsutum
Gohir.A11G298500 Gossypium hirsutum
Gohir.D09G055800 Gossypium hirsutum
Gohir.D11G313300 Gossypium hirsutum
Gorai.006G068900 Gossypium raimondii
Gorai.007G344500 Gossypium raimondii
GSVIVG01017990001 Vitis vinifera
GSVIVG01021882001 Vitis vinifera
HanXRQChr07g0200741 Helianthus annuus
HanXRQChr14g0457681 Helianthus annuus
Hma1.2p1_0083F.1_g042670 Hydrangea macrophylla
Hma1.2p1_0654F.1_g196630 Hydrangea macrophylla
Hma1.2p1_0654F.1_g196660 Hydrangea macrophylla
Hund06996 Selenicereus undatus
Hund12122 Selenicereus undatus
Lalb_Chr04g0264001 Lupinus albus
Lalb_Chr09g0319871 Lupinus albus
Lj1g0003097 Lotus japonicus
Lj1g0004297 Lotus japonicus
Lj4g0005583 Lotus japonicus
Lj7A478T87 Lonicera japonica
LjContig00408g0024130 Lotus japonicus
Lsat_1_v5_gn_1_56180 Lactuca sativa
Lsat_1_v5_gn_2_115920 Lactuca sativa
Manes.08G120700 Manihot esculenta
Manes.15G029600 Manihot esculenta
Mapoly0005s0148 Marchantia polymorpha
MBI03_g38468_MAGBIO Magnolia biondii
MBI03_g47918_MAGBIO Magnolia biondii
MCO03G323 Micromonas commoda
MD03G1029600 Malus domestica
MD04G1217800 Malus domestica
MD11G1033000 Malus domestica
MD11G1033400 Malus domestica
MD12G1235100 Malus domestica
MD12G1235200 Malus domestica
MD16G1195200 Malus domestica
Medtr1g035200 Medicago truncatula
Medtr5g006380 Medicago truncatula
Medtr6g012740 Medicago truncatula
Medtr7g085465 Medicago truncatula
Medtr7g086210 Medicago truncatula
Medtr8g043410 Medicago truncatula
Medtr8g043430 Medicago truncatula
Medtr8g043450 Medicago truncatula
MELO3C003557.2 Cucumis melo
MELO3C031694.2 Cucumis melo
Migut.G00316 Erythranthe guttata
Migut.J01026 Erythranthe guttata
Migut.L00922 Erythranthe guttata
Migut.L01786 Erythranthe guttata
Migut.N00189 Erythranthe guttata
Migut.O00519 Erythranthe guttata
MSTRG.21859 Avicennia marina
MSTRG.26637 Avicennia marina
MSTRG.5850 Avicennia marina
Nitab4.5_0002687g0060 Nicotiana tabacum
Nitab4.5_0003586g0050 Nicotiana tabacum
Nitab4.5_0004903g0030 Nicotiana tabacum
Nn1g02343 Nelumbo nucifera
Nn5g28120 Nelumbo nucifera
Nn6g34079 Nelumbo nucifera
Oeu006310.1 Olea europaea
Oeu021565.1 Olea europaea
Oeu022881.2 Olea europaea
Oeu026809.1 Olea europaea
Oeu044187.2 Olea europaea
Os08g0508600 Oryza sativa ssp. japonica
Peaxi162Scf00071g00848 Petunia axillaris
Peaxi162Scf00220g00008 Petunia axillaris
Peaxi162Scf00220g00009 Petunia axillaris
PGR004G0518 Punica granatum
PGR042G1603 Punica granatum
PGR042G2960 Punica granatum
PGR044G2150 Punica granatum
PGSC0003DMG400027508 Solanum tuberosum
Phvul.002G044900 Phaseolus vulgaris
Phvul.003G288900 Phaseolus vulgaris
Potri.005G047901 Populus trichocarpa
Potri.010G086800 Populus trichocarpa
Potri.013G035000 Populus trichocarpa
Pp3c3_31460 Physcomitrium patens
PRCOL_00003798 Prasinoderma coloniale
Prupe.1G015200 Prunus persica
Prupe.6G025700 Prunus persica
Prupe.6G337800 Prunus persica
Psat2g156040 Pisum sativum
Psat4g143200 Pisum sativum
Psat4g210240 Pisum sativum
PSO017G4668 Papaver somniferum
PSO210G6081 Papaver somniferum
PSO210G7021 Papaver somniferum
PSO761G0286 Papaver somniferum
PSO832G3905 Papaver somniferum
QL03p022295 Quercus lobata
QL05p025202 Quercus lobata
QL08p059718 Quercus lobata
RcHm_v2.0_Chr1g0319871 Rosa chinensis
RcHm_v2.0_Chr1g0334081 Rosa chinensis
RcHm_v2.0_Chr2g0125761 Rosa chinensis
RcHm_v2.0_Chr4g0395011 Rosa chinensis
RcHm_v2.0_Chr4g0416031 Rosa chinensis
RcHm_v2.0_Chr5g0025491 Rosa chinensis
RcHm_v2.0_Chr5g0076411 Rosa chinensis
Rhsim02G0021700 Rhododendron simsii
Rhsim05G0150200 Rhododendron simsii
Sabra05G0043300 Salix brachista
Sabra10G0056700 Salix brachista
SalBow3G3572 Salvia bowleyana
SalBow5G1920 Salvia bowleyana
SalBow5G5584 Salvia bowleyana
Sc09g0003730 Simmondsia chinensis
Sc19g0004090 Simmondsia chinensis
Sed0006923 Sechium edule
Sed0014372 Sechium edule
Sed0025735 Sechium edule
SEGI_19226 Sequoiadendron giganteum
SEGI_20714 Sequoiadendron giganteum
SEGI_22418 Sequoiadendron giganteum
SEGI_32869 Sequoiadendron giganteum
SGA_v2.0_scaffold31G12908 Striga asiatica
SGA_v2.0_scaffold522G52708 Striga asiatica
SMO351G0221 Selaginella moellendorffii
Solyc01g096760.3 Solanum lycopersicum
Sopen01g040470 Solanum pennellii
Sp2g20320 Schrenkiella parvula
Sp3g20270 Schrenkiella parvula
TAR374G0044 Trochodendron aralioides
TAR376G0308 Trochodendron aralioides
TAR629G3488 Trochodendron aralioides
TAR636G3415 Trochodendron aralioides
THA.LOC104821691 Tarenaya hassleriana
Thecc.04G233300 Theobroma cacao
Thecc.05G290400 Theobroma cacao
Thhalv10004943m.g Eutrema salsugineum
Thhalv10022168m.g Eutrema salsugineum
TPR.G20395 Trifolium pratense
TPR.G2301 Trifolium pratense
TPR.G33676 Trifolium pratense
TPR.G7728 Trifolium pratense
TWI09G0630 Tripterygium wilfordii
TWI12G0397 Tripterygium wilfordii
unitig_699.g19995 Utricularia gibba
vmacro15348 Vaccinium macrocarpon
vmacro19828 Vaccinium macrocarpon
VMungo0251G2818 Vigna mungo
VMungo1215G1949 Vigna mungo
VMungo1383G2706 Vigna mungo
Zm00001eb134460 Zea mays
Zm00001eb218130 Zea mays

User provided reference genes

Program Settings