Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p06140 Brassica napus
A06p11330 Brassica napus
A08p18280 Brassica napus
A08p18290 Brassica napus
Aa31LG2G17730 Aethionema arabicum
Aa31LG7G90 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2834 Anthoceros agrestis
Actinidia01740 Actinidia chinensis
Actinidia01741 Actinidia chinensis
Actinidia15756 Actinidia chinensis
Actinidia22335 Actinidia chinensis
Actinidia28512 Actinidia chinensis
Ah.01g021710 Amaranthus hybridus
Ah.11g040450 Amaranthus hybridus
AL1G27410 Arabidopsis lyrata
AL7G19620 Arabidopsis lyrata
Aqoxy5G04051 Aquilegia oxysepala
Aqoxy7G03644 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.JLJY7Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V3VQ7T Arachis hypogaea
AT1G15320 Arabidopsis thaliana
AT4G32250 Arabidopsis thaliana
ATR0800G085 Amborella trichopoda
Atru.chr1.2906 Acer truncatum
Atru.chr1.2914 Acer truncatum
Atru.chr1.2915 Acer truncatum
Atru.chr7.2442 Acer truncatum
AUR62011678 Chenopodium quinoa
AUR62012409 Chenopodium quinoa
AUR62016503 Chenopodium quinoa
AUR62031530 Chenopodium quinoa
BcaB03g12735 Brassica carinata
BcaC01g00573 Brassica carinata
BcaC01g01034 Brassica carinata
BcaC02g09864 Brassica carinata
BcaC03g16017 Brassica carinata
BcaC05g25469 Brassica carinata
BcaC09g52006 Brassica carinata
BcaNung03145 Brassica carinata
BolC1t00669H Brassica oleracea
BolC2t09789H Brassica oleracea
BolC3t19789H Brassica oleracea
BolC3t20420H Brassica oleracea
BolC3t21052H Brassica oleracea
BolC3t21053H Brassica oleracea
BolC4t25223H Brassica oleracea
BolC5t30082H Brassica oleracea
BraA01t00577Z Brassica rapa
BraA06t24312Z Brassica rapa
BraA08t33785Z Brassica rapa
BraA08t33786Z Brassica rapa
C01p06770 Brassica napus
C02p37700 Brassica napus
C03p75300 Brassica napus
C03p81490 Brassica napus
C03p87430 Brassica napus
C03p87440 Brassica napus
C04p35770 Brassica napus
C05p13450 Brassica napus
C09p66980 Brassica napus
CAN.G282.95 Capsicum annuum
CAN.G407.78 Capsicum annuum
CANSAT56G1960 Cannabis sativa
CANSAT56G3976 Cannabis sativa
CARHR015850 Cardamine hirsuta
CARHR240130 Cardamine hirsuta
Carub.0001s1507 Capsella rubella
Carub.0007s0835 Capsella rubella
Ca_13032_v3 Cicer arietinum L.
CBR_g26208 Chara braunii
CBR_g52126 Chara braunii
CBR_g52129 Chara braunii
Cc04_g04440 Coffea canephora
Cc04_g04450 Coffea canephora
Cc08_g00510 Coffea canephora
CDE06G2446 Ceratophyllum demersum
Cfa013135 Carpinus fangiana
Ciclev10007749m.g Citrus clementina
Ciclev10024867m.g Citrus clementina
CiPaw.01G248800 Carya illinoinensis
CiPaw.07G224000 Carya illinoinensis
CiPaw.08G010500 Carya illinoinensis
ClCG05G016820 Citrullus lanatus
COL.COLO4_11933 Corchorus olitorius
COL.COLO4_18869 Corchorus olitorius
Cpa.g.sc217.9 Carica papaya
Cpa.g.sc938.2 Carica papaya
Cpa.g.sc938.3 Carica papaya
Cre07.g332700 Chlamydomonas reinhardtii
CsaV3_3G046340 Cucumis sativus L.
CSS0021236 Camellia sinensis var. sinensis
CSS0025449 Camellia sinensis var. sinensis
CSS0047118 Camellia sinensis var. sinensis
DCAR_001540 Daucus carota
DCAR_025516 Daucus carota
DCAR_025597 Daucus carota
Dinv08634 Davidia involucrata
Dinv18210 Davidia involucrata
Dinv30612 Davidia involucrata
Duzib150G0097 Durio zibethinus
Duzib168G1931 Durio zibethinus
Duzib192G0551 Durio zibethinus
Duzib235G0559 Durio zibethinus
ECA232G1362 Erigeron canadensis
ECA233G5282 Erigeron canadensis
ECA234G3945 Erigeron canadensis
EL10Ac2g04203 Beta vulgaris
EL10Ac9g22041 Beta vulgaris
Eucgr.C02764 Eucalyptus grandis
Eucgr.L01004 Eucalyptus grandis
FAN02G0105 Fragaria x ananassa
FAN02G2169 Fragaria x ananassa
FAN02G3371 Fragaria x ananassa
FAN05G0514 Fragaria x ananassa
FAN09G4722 Fragaria x ananassa
FAN14G1931 Fragaria x ananassa
FAN14G4319 Fragaria x ananassa
FAN15G1565 Fragaria x ananassa
FAN15G3613 Fragaria x ananassa
FAN20G0422 Fragaria x ananassa
FAN24G0483 Fragaria x ananassa
FAN27G2575 Fragaria x ananassa
FvH4_2g28950 Fragaria vesca
FvH4_6g29541 Fragaria vesca
FvH4_6g29550 Fragaria vesca
Glyma.04G065900 Glycine max
Glyma.06G067300 Glycine max
Glyma.14G116000 Glycine max
Glyma.17G211700 Glycine max
Gohir.A05G055500 Gossypium hirsutum
Gohir.A05G122650 Gossypium hirsutum
Gohir.A06G185000 Gossypium hirsutum
Gohir.D05G057600 Gossypium hirsutum
Gohir.D05G123550 Gossypium hirsutum
Gohir.D06G191800 Gossypium hirsutum
Gorai.009G058700 Gossypium raimondii
Gorai.009G127500 Gossypium raimondii
Gorai.010G225000 Gossypium raimondii
GSVIVG01017348001 Vitis vinifera
GSVIVG01035870001 Vitis vinifera
HanXRQChr10g0302851 Helianthus annuus
HanXRQChr13g0403061 Helianthus annuus
Haze_12856 Corylus avellana
Haze_13256 Corylus avellana
Haze_16568 Corylus avellana
Haze_20418 Corylus avellana
Haze_21504 Corylus avellana
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla
Hma1.2p1_0243F.1_g100890 Hydrangea macrophylla
Hma1.2p1_0728F.1_g209320 Hydrangea macrophylla
HPP92_020090 Vanilla planifolia
HPP92_021873 Vanilla planifolia
Hund00650 Selenicereus undatus
Hund00651 Selenicereus undatus
Lalb_Chr08g0244141 Lupinus albus
Lalb_Chr08g0244151 Lupinus albus
Lalb_Chr24g0402131 Lupinus albus
Lj5A73G68 Lonicera japonica
Lj5A73T72 Lonicera japonica
Lj5g0016331 Lotus japonicus
Lj8A705T45 Lonicera japonica
Lsat_1_v5_gn_4_88500 Lactuca sativa
Lsat_1_v5_gn_5_131501 Lactuca sativa
Lsat_1_v5_gn_6_21201 Lactuca sativa
Manes.03G013800 Manihot esculenta
Manes.04G112150 Manihot esculenta
Manes.16G122800 Manihot esculenta
Mapoly0051s0037 Marchantia polymorpha
MBI15_g03382_MAGBIO Magnolia biondii
MD15G1126200 Malus domestica
MD17G1213100 Malus domestica
MD17G1213300 Malus domestica
Medtr1g012610 Medicago truncatula
MELO3C003705.2 Cucumis melo
Migut.A00034 Erythranthe guttata
Migut.I00757 Erythranthe guttata
MSTRG.11145 Avicennia marina
Nitab4.5_0002042g0080 Nicotiana tabacum
Nitab4.5_0002408g0010 Nicotiana tabacum
Nitab4.5_0002905g0010 Nicotiana tabacum
Nn2g12101 Nelumbo nucifera
Nn2g12105 Nelumbo nucifera
Nn8g39521 Nelumbo nucifera
Oeu010901.1 Olea europaea
Oeu033133.1 Olea europaea
Oeu033134.1 Olea europaea
Oeu045127.1 Olea europaea
Oeu053118.1 Olea europaea
Oeu060148.1 Olea europaea
Os06g0639500 Oryza sativa ssp. japonica
Peaxi162Scf00332g00625 Petunia axillaris
Peaxi162Scf00349g00002 Petunia axillaris
Peaxi162Scf01131g00116 Petunia axillaris
PGR031G2915 Punica granatum
PGR044G1101 Punica granatum
PGR102G2637 Punica granatum
PGSC0003DMG400000622 Solanum tuberosum
PGSC0003DMG400022766 Solanum tuberosum
Phvul.001G050700 Phaseolus vulgaris
Phvul.009G092300 Phaseolus vulgaris
Potri.001G202300 Populus trichocarpa
Potri.006G255700 Populus trichocarpa
Potri.018G026400 Populus trichocarpa
Pp3c19_20230 Physcomitrium patens
Prupe.1G482100 Prunus persica
Prupe.3G088500 Prunus persica
Prupe.3G088600 Prunus persica
Psat6g029080 Pisum sativum
PSO017G2139 Papaver somniferum
PSO161G0040 Papaver somniferum
PSO170G0531 Papaver somniferum
QL02p021463 Quercus lobata
QL03p020400 Quercus lobata
QL03p020405 Quercus lobata
QL05p030835 Quercus lobata
QL05p030840 Quercus lobata
RcHm_v2.0_Chr2g0121151 Rosa chinensis
RcHm_v2.0_Chr2g0135091 Rosa chinensis
RcHm_v2.0_Chr2g0135111 Rosa chinensis
RcHm_v2.0_Chr4g0394841 Rosa chinensis
RcHm_v2.0_Chr6g0297781 Rosa chinensis
Rhsim02G0202200 Rhododendron simsii
Sabra06G0200000 Salix brachista
Sabra18G0028900 Salix brachista
SalBow2G1951 Salvia bowleyana
SalBow2G3132 Salvia bowleyana
SalBow4G1093 Salvia bowleyana
Sc06g0000660 Simmondsia chinensis
Sc15g0001450 Simmondsia chinensis
Sed0014976 Sechium edule
SEGI_14926 Sequoiadendron giganteum
SEGI_27567 Sequoiadendron giganteum
SEGI_30845 Sequoiadendron giganteum
SEGI_38229 Sequoiadendron giganteum
SEGI_40489 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09110 Striga asiatica
SGA_v2.0_scaffold5G02703 Striga asiatica
SGA_v2.0_scaffold5G02704 Striga asiatica
SMO143G0194 Selaginella moellendorffii
SMO146G0353 Selaginella moellendorffii
Solyc03g116770.3 Solanum lycopersicum
Sopen01g001070 Solanum pennellii
Sopen03g035690 Solanum pennellii
Sp1g13640 Schrenkiella parvula
Sp7g30000 Schrenkiella parvula
TAR383G0153 Trochodendron aralioides
TAR626G1496 Trochodendron aralioides
THA.LOC104812514 Tarenaya hassleriana
THA.LOC104818615 Tarenaya hassleriana
Thecc.01G108200 Theobroma cacao
Thecc.06G028500 Theobroma cacao
Thecc.06G028700 Theobroma cacao
Thecc.09G023400 Theobroma cacao
Thhalv10008365m.g Eutrema salsugineum
Thhalv10024659m.g Eutrema salsugineum
TPR.G15671 Trifolium pratense
TPR.G40325 Trifolium pratense
TWI18G0347 Tripterygium wilfordii
TWI63G1025 Tripterygium wilfordii
TWI75G1436 Tripterygium wilfordii
unitig_52.g17459 Utricularia gibba
unitig_748.g8081 Utricularia gibba
vmacro11180 Vaccinium macrocarpon
vmacro19002 Vaccinium macrocarpon
vmacro19003 Vaccinium macrocarpon
VMungo0647G2226 Vigna mungo
VMungo1309G0620 Vigna mungo
Zm00001eb387270 Zea mays

User provided reference genes

Program Settings