Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14310 Brassica napus
A03p53930 Brassica napus
A08p32750 Brassica napus
Aa31LG1G2060 Aethionema arabicum
Aa31LG6G5050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1206 Anthoceros agrestis
Actinidia02050 Actinidia chinensis
Actinidia14512 Actinidia chinensis
Actinidia27149 Actinidia chinensis
Actinidia30706 Actinidia chinensis
Actinidia31460 Actinidia chinensis
Actinidia33448 Actinidia chinensis
Ah.05g175970 Amaranthus hybridus
AL1G23950 Arabidopsis lyrata
AL7G30510 Arabidopsis lyrata
Aqoxy7G00464 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6VC9P7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HM81ZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3LKPC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VS7SL0 Arachis hypogaea
AT1G12600 Arabidopsis thaliana
AT4G23010 Arabidopsis thaliana
ATR0757G080 Amborella trichopoda
Atru.chr5.393 Acer truncatum
Atru.chr5.398 Acer truncatum
Atru.chr9.1536 Acer truncatum
AUR62004287 Chenopodium quinoa
AUR62033370 Chenopodium quinoa
BcaB03g13178 Brassica carinata
BcaB03g13179 Brassica carinata
BcaC09g51036 Brassica carinata
BcaNung01003 Brassica carinata
BolC1t01700H Brassica oleracea
BolC7t45727H Brassica oleracea
BolC8t49181H Brassica oleracea
BraA03t14462Z Brassica rapa
BraA08t35198Z Brassica rapa
C01p17630 Brassica napus
C07p52340 Brassica napus
C08p15530 Brassica napus
CAN.G170.55 Capsicum annuum
CAN.G981.39 Capsicum annuum
CANSAT21G1052 Cannabis sativa
CANSAT56G3912 Cannabis sativa
CARHR012870 Cardamine hirsuta
CARHR230070 Cardamine hirsuta
Carub.0001s1228 Capsella rubella
Carub.0007s1826 Capsella rubella
Ca_07868_v3 Cicer arietinum L.
Ca_29749_v3 Cicer arietinum L.
CBR_g8950 Chara braunii
Cc02_g37170 Coffea canephora
Cc08_g13940 Coffea canephora
CDE01G0407 Ceratophyllum demersum
CDE12G0674 Ceratophyllum demersum
Cfa004176 Carpinus fangiana
Cfa012096 Carpinus fangiana
Ciclev10020837m.g Citrus clementina
Ciclev10020900m.g Citrus clementina
CiPaw.01G052400 Carya illinoinensis
CiPaw.02G024600 Carya illinoinensis
CiPaw.11G141600 Carya illinoinensis
CiPaw.12G098900 Carya illinoinensis
ClCG01G003150 Citrullus lanatus
ClCG05G001930 Citrullus lanatus
COL.COLO4_05273 Corchorus olitorius
COL.COLO4_12630 Corchorus olitorius
Cpa.g.sc1109.2 Carica papaya
Cpa.g.sc29.8 Carica papaya
Cre02.g081500 Chlamydomonas reinhardtii
CsaV3_3G009330 Cucumis sativus L.
CsaV3_5G003270 Cucumis sativus L.
CSS0014025 Camellia sinensis var. sinensis
CSS0014950 Camellia sinensis var. sinensis
DCAR_006763 Daucus carota
DCAR_006903 Daucus carota
DCAR_008425 Daucus carota
DCAR_008584 Daucus carota
Dinv32418 Davidia involucrata
Dinv39014 Davidia involucrata
Dinv43753 Davidia involucrata
Duzib084G0138 Durio zibethinus
Duzib138G1924 Durio zibethinus
Duzib205G1968 Durio zibethinus
ECA236G4536 Erigeron canadensis
EL10Ac1g00968 Beta vulgaris
Eucgr.D01926 Eucalyptus grandis
Eucgr.E00218 Eucalyptus grandis
FAN01G1549 Fragaria x ananassa
FAN03G0450 Fragaria x ananassa
FAN04G2551 Fragaria x ananassa
FAN06G3174 Fragaria x ananassa
FAN06G4361 Fragaria x ananassa
FAN07G1384 Fragaria x ananassa
FAN08G2595 Fragaria x ananassa
FAN10G0908 Fragaria x ananassa
FAN10G4204 Fragaria x ananassa
FAN12G3045 Fragaria x ananassa
FAN13G0210 Fragaria x ananassa
FAN17G0669 Fragaria x ananassa
FAN18G2499 Fragaria x ananassa
FAN22G0645 Fragaria x ananassa
FvH4_4g29650 Fragaria vesca
FvH4_5g01421 Fragaria vesca
FvH4_7g12950 Fragaria vesca
Glyma.03G018102 Glycine max
Glyma.09G263900 Glycine max
Glyma.18G228100 Glycine max
Gohir.A03G060950 Gossypium hirsutum
Gohir.A03G062100 Gossypium hirsutum
Gohir.A08G057100 Gossypium hirsutum
Gohir.A08G129100 Gossypium hirsutum
Gohir.A09G193200 Gossypium hirsutum
Gohir.A10G110300 Gossypium hirsutum
Gohir.A10G212300 Gossypium hirsutum
Gohir.A10G212366 Gossypium hirsutum
Gohir.A12G103400 Gossypium hirsutum
Gohir.D03G105100 Gossypium hirsutum
Gohir.D08G150300 Gossypium hirsutum
Gohir.D08G206950 Gossypium hirsutum
Gohir.D09G187400 Gossypium hirsutum
Gohir.D10G155550 Gossypium hirsutum
Gohir.D10G220400 Gossypium hirsutum
Gohir.D10G220450 Gossypium hirsutum
Gohir.D12G106900 Gossypium hirsutum
Gorai.003G111200 Gossypium raimondii
Gorai.004G156100 Gossypium raimondii
Gorai.006G019400 Gossypium raimondii
Gorai.006G210200 Gossypium raimondii
Gorai.008G116300 Gossypium raimondii
Gorai.011G173600 Gossypium raimondii
Gorai.011G248500 Gossypium raimondii
GSVIVG01019865001 Vitis vinifera
GSVIVG01027597001 Vitis vinifera
HanXRQChr04g0121761 Helianthus annuus
HanXRQChr06g0165081 Helianthus annuus
HanXRQChr06g0169391 Helianthus annuus
HanXRQChr07g0188551 Helianthus annuus
Haze_08956 Corylus avellana
Haze_15233 Corylus avellana
Hma1.2p1_0033F.1_g020660 Hydrangea macrophylla
Hma1.2p1_0138F.1_g062600 Hydrangea macrophylla
HPP92_002447 Vanilla planifolia
HPP92_004958 Vanilla planifolia
Hund16985 Selenicereus undatus
Hund27328 Selenicereus undatus
Hund30805 Selenicereus undatus
Lalb_Chr01g0021051 Lupinus albus
Lalb_Chr03g0038771 Lupinus albus
Lj1g0005271 Lotus japonicus
Lj7A522T31 Lonicera japonica
Lj8C238T10 Lonicera japonica
Lj9A576T41 Lonicera japonica
Lsat_1_v5_gn_3_135180 Lactuca sativa
Lsat_1_v5_gn_3_5860 Lactuca sativa
Lsat_1_v5_gn_6_12961 Lactuca sativa
Lsat_1_v5_gn_7_8160 Lactuca sativa
Manes.01G067900 Manihot esculenta
Manes.02G028000 Manihot esculenta
Manes.05G040500 Manihot esculenta
Mapoly0047s0115 Marchantia polymorpha
MBI04_g42595_MAGBIO Magnolia biondii
MCO02G219 Micromonas commoda
MCO04G422 Micromonas commoda
MCO09G559 Micromonas commoda
MCO14G199 Micromonas commoda
MD02G1194900 Malus domestica
MD04G1068500 Malus domestica
MD06G1072000 Malus domestica
MD07G1125700 Malus domestica
Medtr7g076310 Medicago truncatula
MELO3C005627.2 Cucumis melo
MELO3C006153.2 Cucumis melo
Migut.B01682 Erythranthe guttata
Migut.E01148 Erythranthe guttata
MSTRG.17231 Avicennia marina
MSTRG.1898 Avicennia marina
MSTRG.20787 Avicennia marina
Nitab4.5_0001714g0220 Nicotiana tabacum
Nitab4.5_0009025g0020 Nicotiana tabacum
Nitab4.5_0009025g0040 Nicotiana tabacum
Nitab4.5_0009882g0040 Nicotiana tabacum
Nitab4.5_0012175g0010 Nicotiana tabacum
Nn1g01341 Nelumbo nucifera
Nn6g34272 Nelumbo nucifera
Oeu024420.1 Olea europaea
Oeu059229.1 Olea europaea
Oeu062728.1 Olea europaea
Os03g0118200 Oryza sativa ssp. japonica
Peaxi162Scf00021g00313 Petunia axillaris
Peaxi162Scf00620g00921 Petunia axillaris
PGR031G2060 Punica granatum
PGR042G3551 Punica granatum
PGSC0003DMG400000001 Solanum tuberosum
PGSC0003DMG400000251 Solanum tuberosum
PGSC0003DMG400022756 Solanum tuberosum
Phvul.008G070100 Phaseolus vulgaris
Phvul.010G089600 Phaseolus vulgaris
Potri.001G111000 Populus trichocarpa
Potri.003G121000 Populus trichocarpa
Potri.008G209501 Populus trichocarpa
Potri.014G077500 Populus trichocarpa
Pp3c24_8610 Physcomitrium patens
Pp3c8_12150 Physcomitrium patens
PRCOL_00004232 Prasinoderma coloniale
PRCOL_00004775 Prasinoderma coloniale
PRCOL_00005989 Prasinoderma coloniale
PRCOL_00006936 Prasinoderma coloniale
Prupe.2G153800 Prunus persica
Prupe.5G089700 Prunus persica
Psat3g112400 Pisum sativum
PSO478G3243 Papaver somniferum
PSO782G4982 Papaver somniferum
QL08p050744 Quercus lobata
QL12p017084 Quercus lobata
RcHm_v2.0_Chr0c16g0499921 Rosa chinensis
RcHm_v2.0_Chr1g0347281 Rosa chinensis
RcHm_v2.0_Chr1g0352081 Rosa chinensis
RcHm_v2.0_Chr3g0455881 Rosa chinensis
RcHm_v2.0_Chr3g0468281 Rosa chinensis
RcHm_v2.0_Chr4g0437881 Rosa chinensis
RcHm_v2.0_Chr7g0199431 Rosa chinensis
Rhsim01G0154900 Rhododendron simsii
Rhsim07G0021700 Rhododendron simsii
Rhsim07G0021800 Rhododendron simsii
Sabra01G0084600 Salix brachista
Sabra03G0085000 Salix brachista
Sabra14G0054800 Salix brachista
SalBow3G3398 Salvia bowleyana
SalBow6G7094 Salvia bowleyana
Sc02g0002230 Simmondsia chinensis
Sed0009618 Sechium edule
Sed0015809 Sechium edule
Sed0016752 Sechium edule
Sed0020129 Sechium edule
SEGI_12006 Sequoiadendron giganteum
SEGI_18304 Sequoiadendron giganteum
SGA_v2.0_scaffold153G37062 Striga asiatica
SGA_v2.0_scaffold233G43584 Striga asiatica
SGA_v2.0_scaffold286G47106 Striga asiatica
SGA_v2.0_scaffold95G28875 Striga asiatica
SMO165G0172 Selaginella moellendorffii
Solyc01g091840.4 Solanum lycopersicum
Solyc08g080270.3 Solanum lycopersicum
Sopen01g037610 Solanum pennellii
Sopen08g028620 Solanum pennellii
Sp1g11190 Schrenkiella parvula
Sp7g21100 Schrenkiella parvula
TAR375G0639 Trochodendron aralioides
TAR636G2353 Trochodendron aralioides
TAR636G3072 Trochodendron aralioides
THA.LOC104806369 Tarenaya hassleriana
THA.LOC104809423 Tarenaya hassleriana
Thecc.01G369400 Theobroma cacao
Thecc.03G270700 Theobroma cacao
Thhalv10008063m.g Eutrema salsugineum
Thhalv10025623m.g Eutrema salsugineum
TPR.G37847 Trifolium pratense
TWI14G0187 Tripterygium wilfordii
TWI60G0643 Tripterygium wilfordii
TWI81G1076 Tripterygium wilfordii
unitig_0.g1289 Utricularia gibba
unitig_22.g5476 Utricularia gibba
unitig_61.g26402 Utricularia gibba
vmacro04845 Vaccinium macrocarpon
vmacro13341 Vaccinium macrocarpon
VMungo0331G1335 Vigna mungo
VMungo1383G1860 Vigna mungo
Zm00001eb403950 Zea mays

User provided reference genes

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