Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21720 Brassica napus
A03p08150 Brassica napus
A03p21800 Brassica napus
A04p29730 Brassica napus
Aa31LG1G20400 Aethionema arabicum
Aa31LG5G20680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3754 Anthoceros agrestis
Actinidia06769 Actinidia chinensis
Actinidia32448 Actinidia chinensis
Actinidia37356 Actinidia chinensis
Actinidia38854 Actinidia chinensis
Ah.08g213550 Amaranthus hybridus
Ah.10g032650 Amaranthus hybridus
AL4G36300 Arabidopsis lyrata
AL6G32210 Arabidopsis lyrata
Aqoxy1G01228 Aquilegia oxysepala
Aqoxy2G01930 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4L1235 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T8Z27G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UF4UZA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WHB9N7 Arachis hypogaea
AT2G39000 Arabidopsis thaliana
AT5G20660 Arabidopsis thaliana
ATR0048G011 Amborella trichopoda
ATR0048G055 Amborella trichopoda
Atru.chr12.757 Acer truncatum
Atru.chr12.758 Acer truncatum
Atru.chr12.781 Acer truncatum
Atru.chr12.782 Acer truncatum
AUR62018249 Chenopodium quinoa
AUR62033005 Chenopodium quinoa
AUR62037115 Chenopodium quinoa
AUR62037755 Chenopodium quinoa
AUR62038657 Chenopodium quinoa
BcaC02g12914 Brassica carinata
BcaNung00246 Brassica carinata
BolC1t02655H Brassica oleracea
BolC4t28203H Brassica oleracea
BraA01t02081Z Brassica rapa
BraA04t18437Z Brassica rapa
C01p27080 Brassica napus
C04p67010 Brassica napus
CAN.G131.8 Capsicum annuum
CAN.G656.24 Capsicum annuum
CAN.G790.5 Capsicum annuum
CARHR133780 Cardamine hirsuta
CARHR290280 Cardamine hirsuta
Carub.0004s2104 Capsella rubella
Carub.0006s1900 Capsella rubella
CBR_g54174 Chara braunii
CBR_g54226 Chara braunii
Cc02_g11320 Coffea canephora
Cc02_g11330 Coffea canephora
CDE02G1489 Ceratophyllum demersum
CDE04G1444 Ceratophyllum demersum
CDE06G2540 Ceratophyllum demersum
Cfa001648 Carpinus fangiana
Cfa025946 Carpinus fangiana
Ciclev10024578m.g Citrus clementina
Ciclev10030651m.g Citrus clementina
Ciclev10030885m.g Citrus clementina
Ciclev10032329m.g Citrus clementina
CiPaw.01G272400 Carya illinoinensis
CiPaw.01G272500 Carya illinoinensis
ClCG05G021040 Citrullus lanatus
ClCG08G007520 Citrullus lanatus
COL.COLO4_23653 Corchorus olitorius
COL.COLO4_23654 Corchorus olitorius
Cpa.g.sc53.84 Carica papaya
Cpa.g.sc53.85 Carica papaya
Cre16.g662650 Chlamydomonas reinhardtii
CsaV3_5G036260 Cucumis sativus L.
CsaV3_6G036450 Cucumis sativus L.
CSS0006577 Camellia sinensis var. sinensis
CSS0007795 Camellia sinensis var. sinensis
CSS0017911 Camellia sinensis var. sinensis
CSS0041581 Camellia sinensis var. sinensis
DCAR_015299 Daucus carota
DCAR_019102 Daucus carota
Dinv31320 Davidia involucrata
Dinv36437 Davidia involucrata
Dinv36438 Davidia involucrata
Duzib114G0372 Durio zibethinus
Duzib128G0012 Durio zibethinus
Duzib128G0305 Durio zibethinus
Duzib128G1669 Durio zibethinus
ECA233G4317 Erigeron canadensis
ECA238G3090 Erigeron canadensis
EL10Ac3g05855 Beta vulgaris
EL10Ac3g06545 Beta vulgaris
Eucgr.G02835 Eucalyptus grandis
Eucgr.G02836 Eucalyptus grandis
FAN01G2940 Fragaria x ananassa
FAN03G1741 Fragaria x ananassa
FAN03G2366 Fragaria x ananassa
FAN06G0282 Fragaria x ananassa
FAN06G2145 Fragaria x ananassa
FAN10G0968 Fragaria x ananassa
FAN10G3768 Fragaria x ananassa
FvH4_7g19440 Fragaria vesca
FvH4_7g19460 Fragaria vesca
Glyma.02G074000 Glycine max
Glyma.10G210800 Glycine max
Glyma.10G210900 Glycine max
Glyma.16G155400 Glycine max
Glyma.20G179800 Glycine max
Gohir.A10G205500 Gossypium hirsutum
Gohir.A10G205600 Gossypium hirsutum
Gohir.A13G021900 Gossypium hirsutum
Gohir.D10G213800 Gossypium hirsutum
Gohir.D10G213900 Gossypium hirsutum
Gohir.D13G022500 Gossypium hirsutum
Gorai.011G239300 Gossypium raimondii
Gorai.013G025200 Gossypium raimondii
GSVIVG01016268001 Vitis vinifera
GSVIVG01016269001 Vitis vinifera
HanXRQChr08g0218901 Helianthus annuus
HanXRQChr14g0456861 Helianthus annuus
Haze_16887 Corylus avellana
Haze_16888 Corylus avellana
Haze_16889 Corylus avellana
Hma1.2p1_0039F.1_g024760 Hydrangea macrophylla
HPP92_008619 Vanilla planifolia
HPP92_008761 Vanilla planifolia
HPP92_014717 Vanilla planifolia
HPP92_028503 Vanilla planifolia
Hund12052 Selenicereus undatus
Hund12054 Selenicereus undatus
Lalb_Chr02g0142201 Lupinus albus
Lalb_Chr03g0035921 Lupinus albus
Lalb_Chr06g0162341 Lupinus albus
Lalb_Chr06g0162351 Lupinus albus
Lalb_Chr21g0306081 Lupinus albus
Lalb_Chr21g0306091 Lupinus albus
Lalb_Chr21g0306101 Lupinus albus
Lj1C913G7 Lonicera japonica
Lj1C913T4 Lonicera japonica
Lj2g0015916 Lotus japonicus
Lj3g0006441 Lotus japonicus
Lj3g0019343 Lotus japonicus
Lj5g0022157 Lotus japonicus
Lj5g0027397 Lotus japonicus
Lsat_1_v5_gn_2_112320 Lactuca sativa
Lsat_1_v5_gn_5_112181 Lactuca sativa
Lsat_1_v5_gn_8_20140 Lactuca sativa
Lsat_1_v5_gn_9_123180 Lactuca sativa
Manes.07G100200 Manihot esculenta
Manes.10G046400 Manihot esculenta
Manes.10G046500 Manihot esculenta
Mapoly0033s0159 Marchantia polymorpha
Mapoly0061s0015 Marchantia polymorpha
MCO05G511 Micromonas commoda
MD00G1085700 Malus domestica
MD01G1108300 Malus domestica
MD07G1103400 Malus domestica
MD07G1174400 Malus domestica
MD07G1174500 Malus domestica
MD11G1034500 Malus domestica
Medtr1g095000 Medicago truncatula
Medtr1g095040 Medicago truncatula
MELO3C012427.2 Cucumis melo
MELO3C019798.2 Cucumis melo
Migut.F01753 Erythranthe guttata
Migut.F01756 Erythranthe guttata
Migut.F01984 Erythranthe guttata
MSTRG.8144 Avicennia marina
MSTRG.9172 Avicennia marina
Nitab4.5_0000534g0010 Nicotiana tabacum
Nitab4.5_0001053g0040 Nicotiana tabacum
Nitab4.5_0001053g0050 Nicotiana tabacum
Nitab4.5_0001053g0060 Nicotiana tabacum
Nitab4.5_0002524g0010 Nicotiana tabacum
Nn2g10809 Nelumbo nucifera
Nn2g10810 Nelumbo nucifera
Nn3g20716 Nelumbo nucifera
Oeu014386.1 Olea europaea
Oeu014387.1 Olea europaea
Oeu031347.1 Olea europaea
Os02g0806000 Oryza sativa ssp. japonica
Os04g0519900 Oryza sativa ssp. japonica
Os04g0519925 Oryza sativa ssp. japonica
Peaxi162Scf01719g00012 Petunia axillaris
Peaxi162Scf01719g00013 Petunia axillaris
PGR142G1169 Punica granatum
PGR142G3054 Punica granatum
PGSC0003DMG400033889 Solanum tuberosum
Phvul.004G083200 Phaseolus vulgaris
Phvul.007G094700 Phaseolus vulgaris
Phvul.007G094800 Phaseolus vulgaris
Potri.008G039300 Populus trichocarpa
Potri.008G039400 Populus trichocarpa
Potri.010G222900 Populus trichocarpa
Pp3c15_14500 Physcomitrium patens
Pp3c9_12500 Physcomitrium patens
PRCOL_00005349 Prasinoderma coloniale
Prupe.2G213200 Prunus persica
Prupe.2G213300 Prunus persica
Psat6g183480 Pisum sativum
Psat6g183520 Pisum sativum
PSO063G7611 Papaver somniferum
PSO339G3140 Papaver somniferum
PSO339G5277 Papaver somniferum
PSO384G1458 Papaver somniferum
QL08p055746 Quercus lobata
QL08p055755 Quercus lobata
QL08p055771 Quercus lobata
RcHm_v2.0_Chr1g0363321 Rosa chinensis
RcHm_v2.0_Chr1g0363331 Rosa chinensis
Rhsim03G0120400 Rhododendron simsii
Rhsim09G0151500 Rhododendron simsii
Rhsim10G0213100 Rhododendron simsii
Sabra08G0027000 Salix brachista
Sabra10G0172300 Salix brachista
SalBow3G0053 Salvia bowleyana
SalBow3G0762 Salvia bowleyana
SalBow4G2249 Salvia bowleyana
Sc09g0006280 Simmondsia chinensis
Sc20g0001820 Simmondsia chinensis
Sed0007153 Sechium edule
Sed0025740 Sechium edule
SEGI_02124 Sequoiadendron giganteum
SEGI_03933 Sequoiadendron giganteum
SEGI_07815 Sequoiadendron giganteum
SEGI_15474 Sequoiadendron giganteum
SEGI_20605 Sequoiadendron giganteum
SGA_v2.0_scaffold341G49348 Striga asiatica
SGA_v2.0_scaffold51G18685 Striga asiatica
SGA_v2.0_scaffold62G21410 Striga asiatica
SHI21362 Sapria himalayana
SHI21363 Sapria himalayana
SHI21366 Sapria himalayana
SMO134G0014 Selaginella moellendorffii
SMO364G0963 Selaginella moellendorffii
Solyc04g025230.1 Solanum lycopersicum
Solyc04g025240.2 Solanum lycopersicum
Solyc04g025260.3 Solanum lycopersicum
Sopen04g011630 Solanum pennellii
Sopen04g011710 Solanum pennellii
Sp4g21360 Schrenkiella parvula
Sp7g14150 Schrenkiella parvula
Sp7g14310 Schrenkiella parvula
TAR369G0428 Trochodendron aralioides
TAR623G0044 Trochodendron aralioides
TAR633G1832 Trochodendron aralioides
THA.LOC104827063 Tarenaya hassleriana
THA.LOC104827301 Tarenaya hassleriana
Thecc.10G074100 Theobroma cacao
Thecc.10G074300 Theobroma cacao
Thecc.10G074800 Theobroma cacao
Thhalv10017009m.g Eutrema salsugineum
Thhalv10024352m.g Eutrema salsugineum
TPR.G1934 Trifolium pratense
TPR.G1937 Trifolium pratense
TWI15G0405 Tripterygium wilfordii
TWI15G1196 Tripterygium wilfordii
unitig_26.g9079 Utricularia gibba
unitig_26.g9080 Utricularia gibba
unitig_88.g27817 Utricularia gibba
vmacro04869 Vaccinium macrocarpon
vmacro04870 Vaccinium macrocarpon
vmacro07070 Vaccinium macrocarpon
VMungo0251G2398 Vigna mungo
VMungo0464G1224 Vigna mungo
VMungo0720G2840 Vigna mungo
VMungo1197G0001 Vigna mungo
Zm00001eb172140 Zea mays
Zm00001eb378830 Zea mays

User provided reference genes

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