Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p18000 Brassica napus
A06p30440 Brassica napus
Aa31LG10G1650 Aethionema arabicum
Aa31LG1G18070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.280 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis
Actinidia12750 Actinidia chinensis
Actinidia22196 Actinidia chinensis
Actinidia26205 Actinidia chinensis
Actinidia26206 Actinidia chinensis
Ah.07g202770 Amaranthus hybridus
Ah.09g227860 Amaranthus hybridus
Ah.13g066490 Amaranthus hybridus
Ah.13g066500 Amaranthus hybridus
AL1G21270 Arabidopsis lyrata
AL1G62310 Arabidopsis lyrata
AL8G41060 Arabidopsis lyrata
Aqoxy1G00117 Aquilegia oxysepala
Aqoxy5G01632 Aquilegia oxysepala
Aqoxy5G02423 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea
AT1G53645 Arabidopsis thaliana
AT5G63830 Arabidopsis thaliana
ATR0057G033 Amborella trichopoda
ATR0757G152 Amborella trichopoda
Atru.chr1.1039 Acer truncatum
Atru.chr3.1220 Acer truncatum
Atru.chr5.482 Acer truncatum
Atru.chr5.483 Acer truncatum
AUR62002958 Chenopodium quinoa
AUR62007033 Chenopodium quinoa
AUR62007763 Chenopodium quinoa
AUR62011379 Chenopodium quinoa
AUR62016680 Chenopodium quinoa
AUR62019897 Chenopodium quinoa
BcaB02g10898 Brassica carinata
BcaB04g17065 Brassica carinata
BcaB05g24931 Brassica carinata
BcaB07g33312 Brassica carinata
BcaC01g02620 Brassica carinata
BcaC08g43545 Brassica carinata
BcaC08g44106 Brassica carinata
BcaC08g44112 Brassica carinata
BcaC08g46840 Brassica carinata
BolC3t18519H Brassica oleracea
BolC6t36693H Brassica oleracea
BraA05t20694Z Brassica rapa
BraA06t25993Z Brassica rapa
C03p62620 Brassica napus
C06p15180 Brassica napus
CAN.G134.186 Capsicum annuum
CAN.G567.73 Capsicum annuum
CANSAT21G0880 Cannabis sativa
CANSAT21G2418 Cannabis sativa
CARHR043910 Cardamine hirsuta
CARHR277730 Cardamine hirsuta
Carub.0001s4291 Capsella rubella
Carub.0008s2460 Capsella rubella
Ca_12555_v3 Cicer arietinum L.
Ca_12566_v3 Cicer arietinum L.
Ca_18602_v3 Cicer arietinum L.
CBR_g20449 Chara braunii
CBR_g41404 Chara braunii
Cc00_g23270 Coffea canephora
Cc05_g16590 Coffea canephora
CDE02G1608 Ceratophyllum demersum
CDE05G0972 Ceratophyllum demersum
CDE11G0043 Ceratophyllum demersum
Cfa011943 Carpinus fangiana
Ciclev10019766m.g Citrus clementina
Ciclev10020379m.g Citrus clementina
CiPaw.11G114300 Carya illinoinensis
CiPaw.15G113000 Carya illinoinensis
ClCG05G020760 Citrullus lanatus
ClCG07G010710 Citrullus lanatus
COL.COLO4_10772 Corchorus olitorius
COL.COLO4_21461 Corchorus olitorius
Cpa.g.sc175.6 Carica papaya
Cpa.g.sc77.87 Carica papaya
Cre08.g379050 Chlamydomonas reinhardtii
CsaV3_4G007590 Cucumis sativus L.
CsaV3_5G036540 Cucumis sativus L.
CSS0015020 Camellia sinensis var. sinensis
CSS0016681 Camellia sinensis var. sinensis
CSS0039073 Camellia sinensis var. sinensis
CSS0047752 Camellia sinensis var. sinensis
DCAR_009648 Daucus carota
DCAR_009664 Daucus carota
Dinv11454 Davidia involucrata
Dinv17234 Davidia involucrata
Dinv25607 Davidia involucrata
Dinv29488 Davidia involucrata
Dinv37391 Davidia involucrata
Duzib168G0650 Durio zibethinus
Duzib205G1766 Durio zibethinus
ECA240G2126 Erigeron canadensis
ECA246G4077 Erigeron canadensis
EL10Ac5g10510 Beta vulgaris
EL10Ac5g12461 Beta vulgaris
Eucgr.D01694 Eucalyptus grandis
Eucgr.D02598 Eucalyptus grandis
FAN05G1175 Fragaria x ananassa
FAN07G1120 Fragaria x ananassa
FAN08G0319 Fragaria x ananassa
FAN11G0906 Fragaria x ananassa
FAN11G2806 Fragaria x ananassa
FAN12G2820 Fragaria x ananassa
FAN13G3213 Fragaria x ananassa
FAN14G3314 Fragaria x ananassa
FAN16G0440 Fragaria x ananassa
FAN17G1638 Fragaria x ananassa
FAN21G2970 Fragaria x ananassa
FAN22G1998 Fragaria x ananassa
FAN25G1470 Fragaria x ananassa
FvH4_3g14000 Fragaria vesca
FvH4_3g32050 Fragaria vesca
FvH4_4g16080 Fragaria vesca
FvH4_5g11280 Fragaria vesca
Glyma.04G232000 Glycine max
Glyma.06G132900 Glycine max
Glyma.09G030100 Glycine max
Glyma.13G121900 Glycine max
Glyma.15G135900 Glycine max
Gohir.A12G238900 Gossypium hirsutum
Gohir.A13G207000 Gossypium hirsutum
Gohir.D12G240000 Gossypium hirsutum
Gohir.D13G211600 Gossypium hirsutum
Gorai.008G257100 Gossypium raimondii
Gorai.013G241700 Gossypium raimondii
GSVIVG01019628001 Vitis vinifera
GSVIVG01031552001 Vitis vinifera
HanXRQChr02g0047181 Helianthus annuus
HanXRQChr03g0061211 Helianthus annuus
HanXRQChr05g0159341 Helianthus annuus
Haze_09143 Corylus avellana
Haze_18498 Corylus avellana
Haze_18499 Corylus avellana
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla
HPP92_002279 Vanilla planifolia
HPP92_022335 Vanilla planifolia
HPP92_022360 Vanilla planifolia
Hund09330 Selenicereus undatus
Lalb_Chr10g0095811 Lupinus albus
Lalb_Chr17g0338531 Lupinus albus
Lalb_Chr20g0120281 Lupinus albus
Lj1C206G15 Lonicera japonica
Lj2A158G82 Lonicera japonica
Lj6g0017559 Lotus japonicus
LjContig00141g0018407 Lotus japonicus
Lsat_1_v5_gn_5_3041 Lactuca sativa
Lsat_1_v5_gn_6_9040 Lactuca sativa
Manes.02G004600 Manihot esculenta
Manes.08G161700 Manihot esculenta
Mapoly0043s0004 Marchantia polymorpha
Mapoly0049s0078 Marchantia polymorpha
MBI04_g06931_MAGBIO Magnolia biondii
MCO07G240 Micromonas commoda
MD05G1136200 Malus domestica
MD05G1239100 Malus domestica
MD06G1114600 Malus domestica
MD10G1217100 Malus domestica
MD12G1073000 Malus domestica
Medtr1g032200 Medicago truncatula
Medtr1g090530 Medicago truncatula
Medtr5g025880 Medicago truncatula
Medtr8g078230 Medicago truncatula
MELO3C012450.2 Cucumis melo
MELO3C016182.2 Cucumis melo
Migut.H01653 Erythranthe guttata
Migut.J00879 Erythranthe guttata
MSTRG.14571 Avicennia marina
MSTRG.2011 Avicennia marina
Nitab4.5_0002361g0170 Nicotiana tabacum
Nitab4.5_0002728g0050 Nicotiana tabacum
Nitab4.5_0002840g0110 Nicotiana tabacum
Nitab4.5_0005042g0030 Nicotiana tabacum
Nn4g25029 Nelumbo nucifera
Nn4g26685 Nelumbo nucifera
Oeu004999.3 Olea europaea
Oeu010746.1 Olea europaea
Oeu019749.1 Olea europaea
Os06g0664400 Oryza sativa ssp. japonica
Os10g0520700 Oryza sativa ssp. japonica
Peaxi162Scf00074g00358 Petunia axillaris
Peaxi162Scf00225g00129 Petunia axillaris
PGR031G3103 Punica granatum
PGR102G1955 Punica granatum
PGSC0003DMG400012246 Solanum tuberosum
PGSC0003DMG400022499 Solanum tuberosum
Phvul.006G073200 Phaseolus vulgaris
Phvul.006G122700 Phaseolus vulgaris
Phvul.009G039500 Phaseolus vulgaris
Potri.001G085800 Populus trichocarpa
Potri.003G145100 Populus trichocarpa
Potri.015G137000 Populus trichocarpa
Pp3c12_26140 Physcomitrium patens
Pp3c16_17440 Physcomitrium patens
Prupe.4G127000 Prunus persica
Prupe.5G127300 Prunus persica
Psat4g091000 Pisum sativum
Psat6g045400 Pisum sativum
PSO017G1033 Papaver somniferum
PSO017G2893 Papaver somniferum
PSO170G3666 Papaver somniferum
PSO339G4385 Papaver somniferum
PSO384G5034 Papaver somniferum
QL02p027659 Quercus lobata
QL04p094472 Quercus lobata
QL04p094522 Quercus lobata
RcHm_v2.0_Chr5g0023231 Rosa chinensis
RcHm_v2.0_Chr5g0023281 Rosa chinensis
RcHm_v2.0_Chr7g0184121 Rosa chinensis
RcHm_v2.0_Chr7g0184131 Rosa chinensis
RcHm_v2.0_Chr7g0186571 Rosa chinensis
Rhsim06G0244600 Rhododendron simsii
Rhsim09G0088500 Rhododendron simsii
RhsimUnG0115700 Rhododendron simsii
Sabra01G0062100 Salix brachista
Sabra15G0148600 Salix brachista
SalBow6G5481 Salvia bowleyana
Sc18g0006950 Simmondsia chinensis
Sc22g0004750 Simmondsia chinensis
Sc22g0004760 Simmondsia chinensis
Sed0001422 Sechium edule
Sed0021026 Sechium edule
SEGI_04382 Sequoiadendron giganteum
SEGI_13390 Sequoiadendron giganteum
SEGI_16855 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30125 Striga asiatica
SGA_v2.0_scaffold49G18207 Striga asiatica
SHI32899 Sapria himalayana
SMO285G0002 Selaginella moellendorffii
SMO348G0019 Selaginella moellendorffii
SMO348G0061 Selaginella moellendorffii
Solyc01g098030.4 Solanum lycopersicum
Solyc08g082960.3 Solanum lycopersicum
Sopen01g041600 Solanum pennellii
Sopen01g041610 Solanum pennellii
Sopen08g031180 Solanum pennellii
Sp1g40180 Schrenkiella parvula
Sp2g26890 Schrenkiella parvula
TAR375G0040 Trochodendron aralioides
TAR626G1844 Trochodendron aralioides
THA.LOC104822601 Tarenaya hassleriana
THA.LOC104823623 Tarenaya hassleriana
Thecc.03G223700 Theobroma cacao
Thecc.09G195000 Theobroma cacao
Thhalv10004334m.g Eutrema salsugineum
Thhalv10011382m.g Eutrema salsugineum
Thhalv10012156m.g Eutrema salsugineum
TPR.G36929 Trifolium pratense
TWI59G0446 Tripterygium wilfordii
TWI60G0007 Tripterygium wilfordii
unitig_21.g20249 Utricularia gibba
unitig_22.g5105 Utricularia gibba
vmacro00789 Vaccinium macrocarpon
vmacro04587 Vaccinium macrocarpon
vmacro11517 Vaccinium macrocarpon
VMungo0540G1128 Vigna mungo
VMungo1309G1878 Vigna mungo
VMungo1309G3079 Vigna mungo
Zm00001eb021220 Zea mays
Zm00001eb044440 Zea mays
Zm00001eb060430 Zea mays
Zm00001eb225290 Zea mays
Zm00001eb442810 Zea mays

User provided reference genes

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