Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p16210 Brassica napus
A09p00810 Brassica napus
A09p00820 Brassica napus
A10p09110 Brassica napus
A10p29370 Brassica napus
Aa31LG3G18780 Aethionema arabicum
Aa31LG3G7840 Aethionema arabicum
Aa31LG5G90 Aethionema arabicum
Actinidia13582 Actinidia chinensis
Actinidia22770 Actinidia chinensis
Actinidia22824 Actinidia chinensis
Actinidia24996 Actinidia chinensis
Ah.05g173640 Amaranthus hybridus
AL6G18020 Arabidopsis lyrata
AL8G25630 Arabidopsis lyrata
AL8G25670 Arabidopsis lyrata
Aqoxy5G03867 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.IA95G7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MBUZ7W Arachis hypogaea
AT5G07670 Arabidopsis thaliana
AT5G51370 Arabidopsis thaliana
AT5G51380 Arabidopsis thaliana
ATR0317G122 Amborella trichopoda
Atru.chr1.754 Acer truncatum
Atru.chr1.755 Acer truncatum
Atru.chr5.221 Acer truncatum
AUR62004152 Chenopodium quinoa
AUR62013695 Chenopodium quinoa
BcaB01g02206 Brassica carinata
BcaB05g21601 Brassica carinata
BcaB08g35493 Brassica carinata
BcaC01g06088 Brassica carinata
BcaC01g06117 Brassica carinata
BcaC04g20685 Brassica carinata
BcaC04g24209 Brassica carinata
BcaC06g32417 Brassica carinata
BcaC06g32418 Brassica carinata
BcaC06g32496 Brassica carinata
BcaC08g43616 Brassica carinata
BcaNung06186 Brassica carinata
BcaNung06189 Brassica carinata
BolC2t06289H Brassica oleracea
BolC3t14297H Brassica oleracea
BolC3t19026H Brassica oleracea
BolC6t36107H Brassica oleracea
BolC9t52940H Brassica oleracea
BolC9t56943H Brassica oleracea
BolC9t59716H Brassica oleracea
BraA02t04929Z Brassica rapa
BraA03t10912Z Brassica rapa
BraA09t35679Z Brassica rapa
BraA10t42994Z Brassica rapa
BraA10t44980Z Brassica rapa
C02p03250 Brassica napus
C03p19090 Brassica napus
C03p68000 Brassica napus
C09p00050 Brassica napus
C09p40610 Brassica napus
C09p69730 Brassica napus
CAN.G421.5 Capsicum annuum
CAN.G4215.1 Capsicum annuum
CAN.G48.42 Capsicum annuum
CAN.G899.22 Capsicum annuum
CANSAT56G2174 Cannabis sativa
CANSAT56G3712 Cannabis sativa
CARHR036390 Cardamine hirsuta
CARHR129310 Cardamine hirsuta
CARHR205500 Cardamine hirsuta
CARHR264100 Cardamine hirsuta
Carub.0006s0664 Capsella rubella
Carub.0008s1140 Capsella rubella
Carub.0008s1141 Capsella rubella
Ca_00247_v3 Cicer arietinum L.
Ca_25533_v3 Cicer arietinum L.
Ca_27070_v3 Cicer arietinum L.
CBR_g23719 Chara braunii
CBR_g55286 Chara braunii
Cc02_g04380 Coffea canephora
Cc02_g24630 Coffea canephora
CDE04G0549 Ceratophyllum demersum
CDE11G1109 Ceratophyllum demersum
Cfa008152 Carpinus fangiana
Cfa011140 Carpinus fangiana
Ciclev10004858m.g Citrus clementina
CiPaw.03G092300 Carya illinoinensis
CiPaw.04G059100 Carya illinoinensis
ClCG07G016810 Citrullus lanatus
COL.COLO4_12472 Corchorus olitorius
COL.COLO4_14103 Corchorus olitorius
Cpa.g.c29748.1 Carica papaya
Cre08.g358553 Chlamydomonas reinhardtii
CsaV3_4G004000 Cucumis sativus L.
CsaV3_4G004010 Cucumis sativus L.
CSS0014056 Camellia sinensis var. sinensis
CSS0021538 Camellia sinensis var. sinensis
CSS0024999 Camellia sinensis var. sinensis
CSS0026455 Camellia sinensis var. sinensis
DCAR_015868 Daucus carota
DCAR_018113 Daucus carota
DCAR_018114 Daucus carota
DCAR_020183 Daucus carota
Dinv06569 Davidia involucrata
Dinv43661 Davidia involucrata
Duzib084G1134 Durio zibethinus
Duzib138G0734 Durio zibethinus
Duzib205G0795 Durio zibethinus
ECA232G0019 Erigeron canadensis
ECA233G4656 Erigeron canadensis
ECA236G1621 Erigeron canadensis
EL10Ac1g00825 Beta vulgaris
Eucgr.A02899 Eucalyptus grandis
FAN01G0678 Fragaria x ananassa
FAN01G2556 Fragaria x ananassa
FAN03G1420 Fragaria x ananassa
FAN03G1941 Fragaria x ananassa
FAN03G2107 Fragaria x ananassa
FAN03G2620 Fragaria x ananassa
FAN06G0095 Fragaria x ananassa
FAN06G0901 Fragaria x ananassa
FAN06G2078 Fragaria x ananassa
FAN06G3996 Fragaria x ananassa
FAN10G0186 Fragaria x ananassa
FAN10G3280 Fragaria x ananassa
FAN10G4047 Fragaria x ananassa
FvH4_7g10820 Fragaria vesca
FvH4_7g27300 Fragaria vesca
Glyma.04G120000 Glycine max
Glyma.06G318100 Glycine max
Glyma.09G229800 Glycine max
Glyma.12G006500 Glycine max
Gohir.A03G059400 Gossypium hirsutum
Gohir.A08G137333 Gossypium hirsutum
Gohir.A12G095600 Gossypium hirsutum
Gohir.A12G197900 Gossypium hirsutum
Gohir.D01G146850 Gossypium hirsutum
Gohir.D03G106500 Gossypium hirsutum
Gohir.D08G158200 Gossypium hirsutum
Gohir.D12G098200 Gossypium hirsutum
Gohir.D12G200500 Gossypium hirsutum
Gorai.002G182800 Gossypium raimondii
Gorai.003G113000 Gossypium raimondii
Gorai.004G164500 Gossypium raimondii
Gorai.008G107000 Gossypium raimondii
Gorai.008G215600 Gossypium raimondii
GSVIVG01014046001 Vitis vinifera
GSVIVG01018169001 Vitis vinifera
HanXRQChr02g0045091 Helianthus annuus
HanXRQChr04g0123401 Helianthus annuus
HanXRQChr06g0168941 Helianthus annuus
HanXRQChr13g0420571 Helianthus annuus
HanXRQChr16g0512811 Helianthus annuus
Haze_13879 Corylus avellana
HPP92_003453 Vanilla planifolia
HPP92_021034 Vanilla planifolia
HPP92_027431 Vanilla planifolia
HPP92_027432 Vanilla planifolia
Hund17053 Selenicereus undatus
Hund27383 Selenicereus undatus
Lalb_Chr01g0000331 Lupinus albus
Lalb_Chr19g0140331 Lupinus albus
Lalb_Chr19g0140341 Lupinus albus
Lj1A978T43 Lonicera japonica
Lj3g0006102 Lotus japonicus
Lj3g0017890 Lotus japonicus
Lj9A563T52 Lonicera japonica
Lsat_1_v5_gn_7_10161 Lactuca sativa
Lsat_1_v5_gn_8_10221 Lactuca sativa
Lsat_1_v5_gn_9_51960 Lactuca sativa
Manes.01G269900 Manihot esculenta
Manes.05G050000 Manihot esculenta
Manes.06G133700 Manihot esculenta
Manes.14G036800 Manihot esculenta
Mapoly0089s0010 Marchantia polymorpha
MBI04_g09507_MAGBIO Magnolia biondii
MD01G1182100 Malus domestica
MD02G1213700 Malus domestica
MD07G1113100 Malus domestica
MD07G1252400 Malus domestica
Medtr3g408430 Medicago truncatula
Medtr4g036815 Medicago truncatula
MELO3C017665.2 Cucumis melo
MELO3C017667.2 Cucumis melo
Migut.B01580 Erythranthe guttata
Migut.F00485 Erythranthe guttata
Migut.F01189 Erythranthe guttata
MSTRG.132 Avicennia marina
MSTRG.20723 Avicennia marina
MSTRG.28171 Avicennia marina
Nitab4.5_0000706g0080 Nicotiana tabacum
Nitab4.5_0001267g0140 Nicotiana tabacum
Nitab4.5_0002304g0010 Nicotiana tabacum
Nitab4.5_0003490g0010 Nicotiana tabacum
Nn1g00982 Nelumbo nucifera
Nn6g33944 Nelumbo nucifera
Nn6g33945 Nelumbo nucifera
Oeu017788.1 Olea europaea
Oeu061520.1 Olea europaea
Os02g0658500 Oryza sativa ssp. japonica
Peaxi162Scf00241g00029 Petunia axillaris
Peaxi162Scf00377g00210 Petunia axillaris
PGR042G2834 Punica granatum
PGSC0003DMG400014829 Solanum tuberosum
PGSC0003DMG401000105 Solanum tuberosum
Phvul.005G008500 Phaseolus vulgaris
Phvul.011G007400 Phaseolus vulgaris
Potri.001G125800 Populus trichocarpa
Potri.002G143200 Populus trichocarpa
Potri.003G107900 Populus trichocarpa
Potri.014G059100 Populus trichocarpa
Pp3c10_7500 Physcomitrium patens
Pp3c14_8820 Physcomitrium patens
Prupe.2G136200 Prunus persica
Prupe.2G275900 Prunus persica
Psat0s1875g0200 Pisum sativum
Psat5g227680 Pisum sativum
PSO063G7581 Papaver somniferum
PSO782G2868 Papaver somniferum
QL04p035906 Quercus lobata
QL09p005350 Quercus lobata
RcHm_v2.0_Chr1g0348741 Rosa chinensis
RcHm_v2.0_Chr1g0374141 Rosa chinensis
RcHm_v2.0_Chr6g0287661 Rosa chinensis
Rhsim03G0166100 Rhododendron simsii
Rhsim07G0032400 Rhododendron simsii
Sabra02G0111600 Salix brachista
Sabra03G0074800 Salix brachista
Sabra14G0043100 Salix brachista
SalBow2G3023 Salvia bowleyana
SalBow5G0120 Salvia bowleyana
SalBow5G3928 Salvia bowleyana
Sc26g0001320 Simmondsia chinensis
Sed0006070 Sechium edule
Sed0012643 Sechium edule
Sed0013486 Sechium edule
SEGI_00866 Sequoiadendron giganteum
SGA_v2.0_scaffold153G36961 Striga asiatica
SGA_v2.0_scaffold44G16552 Striga asiatica
SGA_v2.0_scaffold56G19936 Striga asiatica
SHI21377 Sapria himalayana
SMO364G0456 Selaginella moellendorffii
Solyc01g095800.3 Solanum lycopersicum
Solyc03g093310.3 Solanum lycopersicum
Sopen01g039550 Solanum pennellii
Sopen03g024090 Solanum pennellii
Sp6g13550 Schrenkiella parvula
Sp6g35230 Schrenkiella parvula
TAR374G1076 Trochodendron aralioides
TAR375G0105 Trochodendron aralioides
THA.LOC104801535 Tarenaya hassleriana
THA.LOC104811525 Tarenaya hassleriana
THA.LOC104814076 Tarenaya hassleriana
Thecc.01G385400 Theobroma cacao
Thecc.03G153800 Theobroma cacao
Thhalv10013410m.g Eutrema salsugineum
Thhalv10013413m.g Eutrema salsugineum
Thhalv10028634m.g Eutrema salsugineum
TPR.G12206 Trifolium pratense
TPR.G3641 Trifolium pratense
TWI14G0687 Tripterygium wilfordii
TWI39G0886 Tripterygium wilfordii
TWI39G1168 Tripterygium wilfordii
unitig_0.g1949 Utricularia gibba
unitig_8.g3837 Utricularia gibba
unitig_8.g3838 Utricularia gibba
vmacro06814 Vaccinium macrocarpon
vmacro13456 Vaccinium macrocarpon
VMungo0647G1515 Vigna mungo
VMungo1080G0410 Vigna mungo
VMungo1127G1230 Vigna mungo
VMungo1383G0387 Vigna mungo
VMungo1383G3134 Vigna mungo
Zm00001eb249570 Zea mays

User provided reference genes

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