Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36480 Brassica napus
A05p24210 Brassica napus
A06p40040 Brassica napus
A09p04020 Brassica napus
A09p32660 Brassica napus
Aa31LG2G4010 Aethionema arabicum
Aa31LG6G8110 Aethionema arabicum
Aa31LG9G11990 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4932 Anthoceros agrestis
Actinidia01962 Actinidia chinensis
Actinidia29395 Actinidia chinensis
Ah.05g168740 Amaranthus hybridus
Ah.06g185310 Amaranthus hybridus
AL1G48190 Arabidopsis lyrata
AL5G19150 Arabidopsis lyrata
Aqoxy3G03548 Aquilegia oxysepala
Aqoxy6G00077 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.891MI4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NGDJ3K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V34W8S Arachis hypogaea
AT1G33780 Arabidopsis thaliana
AT3G29240 Arabidopsis thaliana
ATR0598G145 Amborella trichopoda
ATR1089G083 Amborella trichopoda
Atru.chr13.2425 Acer truncatum
AUR62019571 Chenopodium quinoa
AUR62022397 Chenopodium quinoa
AUR62034303 Chenopodium quinoa
AUR62043188 Chenopodium quinoa
BcaB04g19508 Brassica carinata
BcaB07g30091 Brassica carinata
BcaB07g33008 Brassica carinata
BcaC04g23843 Brassica carinata
BcaC06g33681 Brassica carinata
BcaC08g43841 Brassica carinata
BolC2t11600H Brassica oleracea
BolC5t32523H Brassica oleracea
BolC6t36367H Brassica oleracea
BolC7t44335H Brassica oleracea
BolC9t53355H Brassica oleracea
BraA02t08643Z Brassica rapa
BraA05t21300Z Brassica rapa
BraA06t26919Z Brassica rapa
BraA09t36038Z Brassica rapa
BraA09t38805Z Brassica rapa
C02p55440 Brassica napus
C06p12230 Brassica napus
C07p38130 Brassica napus
C09p04230 Brassica napus
CAN.G1130.2 Capsicum annuum
CAN.G1130.3 Capsicum annuum
CAN.G34.19 Capsicum annuum
CANSAT01G2506 Cannabis sativa
CANSAT25G3888 Cannabis sativa
CARHR033180 Cardamine hirsuta
CARHR033190 Cardamine hirsuta
CARHR153900 Cardamine hirsuta
Carub.0001s3196 Capsella rubella
Carub.0005s0795 Capsella rubella
Ca_06367_v3 Cicer arietinum L.
Ca_06899_v3 Cicer arietinum L.
CBR_g49322 Chara braunii
Cc07_g03780 Coffea canephora
Cc10_g09150 Coffea canephora
CDE04G3328 Ceratophyllum demersum
Cfa007615 Carpinus fangiana
Cfa008107 Carpinus fangiana
Ciclev10012318m.g Citrus clementina
Ciclev10020938m.g Citrus clementina
CiPaw.03G016900 Carya illinoinensis
CiPaw.04G010800 Carya illinoinensis
CiPaw.04G013700 Carya illinoinensis
ClCG11G004610 Citrullus lanatus
ClCG11G008900 Citrullus lanatus
COL.COLO4_12248 Corchorus olitorius
COL.COLO4_24594 Corchorus olitorius
Cpa.g.c47000 Carica papaya
Cpa.g.sc438.2 Carica papaya
Cre03.g189700 Chlamydomonas reinhardtii
Cre04.g223700 Chlamydomonas reinhardtii
Cre08.g377950 Chlamydomonas reinhardtii
CsaV3_2G033130 Cucumis sativus L.
CsaV3_5G038380 Cucumis sativus L.
CSS0007417 Camellia sinensis var. sinensis
CSS0025025 Camellia sinensis var. sinensis
CSS0029679 Camellia sinensis var. sinensis
DCAR_003518 Daucus carota
DCAR_011067 Daucus carota
Dinv04368 Davidia involucrata
Dinv09406 Davidia involucrata
Dinv11494 Davidia involucrata
Dinv33800 Davidia involucrata
Duzib177G0729 Durio zibethinus
Duzib264G0678 Durio zibethinus
ECA232G3320 Erigeron canadensis
ECA247G3374 Erigeron canadensis
EL10Ac1g01641 Beta vulgaris
EL10Ac4g08335 Beta vulgaris
Eucgr.F02964 Eucalyptus grandis
Eucgr.I01992 Eucalyptus grandis
FAN02G1345 Fragaria x ananassa
FAN04G1330 Fragaria x ananassa
FAN05G0632 Fragaria x ananassa
FAN08G1727 Fragaria x ananassa
FAN09G3101 Fragaria x ananassa
FAN14G5248 Fragaria x ananassa
FAN18G4553 Fragaria x ananassa
FvH4_5g33090 Fragaria vesca
FvH4_6g47750 Fragaria vesca
Glyma.04G256600 Glycine max
Glyma.06G324900 Glycine max
Glyma.08G241200 Glycine max
Glyma.18G263600 Glycine max
Gohir.A02G087500 Gossypium hirsutum
Gohir.A05G252600 Gossypium hirsutum
Gohir.A05G369450 Gossypium hirsutum
Gohir.A09G012300 Gossypium hirsutum
Gohir.D02G102400 Gossypium hirsutum
Gohir.D04G045900 Gossypium hirsutum
Gohir.D05G254500 Gossypium hirsutum
Gohir.D09G011200 Gossypium hirsutum
Gorai.005G116200 Gossypium raimondii
Gorai.006G013000 Gossypium raimondii
Gorai.009G266000 Gossypium raimondii
Gorai.012G051100 Gossypium raimondii
GSVIVG01011480001 Vitis vinifera
GSVIVG01023984001 Vitis vinifera
GSVIVG01036432001 Vitis vinifera
GSVIVG01038486001 Vitis vinifera
HanXRQChr02g0037051 Helianthus annuus
HanXRQChr04g0102671 Helianthus annuus
HanXRQChr09g0264091 Helianthus annuus
HanXRQChr15g0488431 Helianthus annuus
Haze_13930 Corylus avellana
Haze_13931 Corylus avellana
Haze_14478 Corylus avellana
Hma1.2p1_0004F.1_g003840 Hydrangea macrophylla
Hma1.2p1_0423F.1_g150190 Hydrangea macrophylla
Hma1.2p1_0442F.1_g153910 Hydrangea macrophylla
Hma1.2p1_2073F.1_g313220 Hydrangea macrophylla
HPP92_003724 Vanilla planifolia
Hund17559 Selenicereus undatus
Lalb_Chr10g0093261 Lupinus albus
Lalb_Chr18g0049291 Lupinus albus
Lj1g0027981 Lotus japonicus
Lj3g0009450 Lotus japonicus
Lj4P115T32 Lonicera japonica
Lj9P700T80 Lonicera japonica
Lsat_1_v5_gn_1_25241 Lactuca sativa
Lsat_1_v5_gn_4_170140 Lactuca sativa
Manes.01G099700 Manihot esculenta
Manes.02G050400 Manihot esculenta
Manes.02G208680 Manihot esculenta
Mapoly0060s0036 Marchantia polymorpha
Mapoly0072s0055 Marchantia polymorpha
MBI03_g28433_MAGBIO Magnolia biondii
MBI03_g36667_MAGBIO Magnolia biondii
MBI03_g39326_MAGBIO Magnolia biondii
MBI06_g06674_MAGBIO Magnolia biondii
MBI19_g13737_MAGBIO Magnolia biondii
MCO05G443 Micromonas commoda
MCO09G639 Micromonas commoda
MD08G1215000 Malus domestica
MD09G1058900 Malus domestica
MD09G1059000 Malus domestica
MD15G1398000 Malus domestica
MD17G1054800 Malus domestica
Medtr3g005140 Medicago truncatula
Medtr7g011850 Medicago truncatula
MELO3C008083.2 Cucumis melo
MELO3C022019.2 Cucumis melo
Migut.C01356 Erythranthe guttata
Migut.H00665 Erythranthe guttata
MSTRG.1584 Avicennia marina
MSTRG.23908 Avicennia marina
MSTRG.25492 Avicennia marina
Nitab4.5_0000212g0150 Nicotiana tabacum
Nitab4.5_0003346g0060 Nicotiana tabacum
Nitab4.5_0003347g0120 Nicotiana tabacum
Nitab4.5_0006798g0040 Nicotiana tabacum
Nn3g17368 Nelumbo nucifera
Nn5g27417 Nelumbo nucifera
Oeu010231.1 Olea europaea
Oeu023207.2 Olea europaea
Oeu062140.1 Olea europaea
Os01g0886000 Oryza sativa ssp. japonica
Os05g0420200 Oryza sativa ssp. japonica
Os10g0330400 Oryza sativa ssp. japonica
Peaxi162Scf00078g00248 Petunia axillaris
Peaxi162Scf00629g00316 Petunia axillaris
PGR004G1115 Punica granatum
PGR042G2340 Punica granatum
PGSC0003DMG400027809 Solanum tuberosum
PGSC0003DMG401025150 Solanum tuberosum
Phvul.008G040000 Phaseolus vulgaris
Phvul.L001607 Phaseolus vulgaris
Potri.004G125800 Populus trichocarpa
Potri.013G100000 Populus trichocarpa
Potri.019G073000 Populus trichocarpa
Pp3c11_23680 Physcomitrium patens
PRCOL_00000435 Prasinoderma coloniale
PRCOL_00001372 Prasinoderma coloniale
PRCOL_00005896 Prasinoderma coloniale
Prupe.1G546400 Prunus persica
Prupe.3G261300 Prunus persica
Psat1g003240 Pisum sativum
Psat3g198800 Pisum sativum
PSO017G0358 Papaver somniferum
PSO017G3913 Papaver somniferum
PSO144G0124 Papaver somniferum
PSO170G0597 Papaver somniferum
PSO478G4048 Papaver somniferum
PSO782G4228 Papaver somniferum
QL02p039295 Quercus lobata
QL09p002944 Quercus lobata
QL09p004013 Quercus lobata
RcHm_v2.0_Chr2g0166901 Rosa chinensis
RcHm_v2.0_Chr7g0231261 Rosa chinensis
Rhsim10G0034600 Rhododendron simsii
Rhsim12G0004500 Rhododendron simsii
Sabra04G0066500 Salix brachista
Sabra13G0085700 Salix brachista
Sabra19G0084400 Salix brachista
SalBow1G1406 Salvia bowleyana
SalBow1G7503 Salvia bowleyana
SalBow6G3049 Salvia bowleyana
SalBow6G3547 Salvia bowleyana
SalBow7G1521 Salvia bowleyana
Sc03g0010310 Simmondsia chinensis
Sc23g0007030 Simmondsia chinensis
Sed0011145 Sechium edule
Sed0014289 Sechium edule
Sed0019044 Sechium edule
SEGI_17937 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32587 Striga asiatica
SGA_v2.0_scaffold24G10626 Striga asiatica
SHI16731 Sapria himalayana
SMO141G0017 Selaginella moellendorffii
SMO240G0046 Selaginella moellendorffii
Solyc02g067050.3 Solanum lycopersicum
Solyc11g030700.1 Solanum lycopersicum
Solyc11g030710.2 Solanum lycopersicum
Sopen02g016240 Solanum pennellii
Sopen11g013750 Solanum pennellii
Sp1g29120 Schrenkiella parvula
Sp2g17830 Schrenkiella parvula
TAR371G0112 Trochodendron aralioides
TAR376G0824 Trochodendron aralioides
TAR628G1571 Trochodendron aralioides
THA.LOC104806757 Tarenaya hassleriana
THA.LOC104822985 Tarenaya hassleriana
Thecc.04G089300 Theobroma cacao
Thecc.08G173800 Theobroma cacao
Thhalv10004603m.g Eutrema salsugineum
Thhalv10008168m.g Eutrema salsugineum
TPR.G25495 Trifolium pratense
TWI12G0191 Tripterygium wilfordii
TWI18G0057 Tripterygium wilfordii
TWI60G1450 Tripterygium wilfordii
unitig_37.g13086 Utricularia gibba
unitig_46.g17990 Utricularia gibba
unitig_46.g17991 Utricularia gibba
unitig_736.g22241 Utricularia gibba
vmacro00923 Vaccinium macrocarpon
vmacro05673 Vaccinium macrocarpon
vmacro22751 Vaccinium macrocarpon
VMungo1080G0751 Vigna mungo
VMungo1383G3650 Vigna mungo
Zm00001eb044320 Zea mays
Zm00001eb279610 Zea mays
Zm00001eb297620 Zea mays
Zm00001eb349200 Zea mays
Zm00001eb366020 Zea mays

User provided reference genes

Program Settings