Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02840 Brassica napus
A04p32030 Brassica napus
A05p02760 Brassica napus
A07p23740 Brassica napus
Aa31LG10G12640 Aethionema arabicum
Actinidia06318 Actinidia chinensis
Actinidia06871 Actinidia chinensis
Actinidia09385 Actinidia chinensis
Actinidia20306 Actinidia chinensis
Ah.06g193390 Amaranthus hybridus
AL4G40550 Arabidopsis lyrata
AL5G39580 Arabidopsis lyrata
Aqoxy1G00163 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KXG6SZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NFJ8RM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SGG4FM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T66IS6 Arachis hypogaea
AT2G42190 Arabidopsis thaliana
AT3G57930 Arabidopsis thaliana
ATR0605G251 Amborella trichopoda
Atru.chr3.2481 Acer truncatum
Atru.chr8.1067 Acer truncatum
AUR62012058 Chenopodium quinoa
AUR62024320 Chenopodium quinoa
BcaB02g07565 Brassica carinata
BcaB02g08288 Brassica carinata
BcaB06g29227 Brassica carinata
BcaC02g07259 Brassica carinata
BcaC02g09972 Brassica carinata
BcaC02g12467 Brassica carinata
BcaC07g40163 Brassica carinata
BcaC07g40164 Brassica carinata
BcaC08g44879 Brassica carinata
BcaNung04404 Brassica carinata
BolC4t21972H Brassica oleracea
BolC4t25007H Brassica oleracea
BolC4t28453H Brassica oleracea
BolC6t37649H Brassica oleracea
BolC8t51007H Brassica oleracea
BraA04t16008Z Brassica rapa
BraA04t18660Z Brassica rapa
BraA05t19268Z Brassica rapa
BraA07t30027Z Brassica rapa
C04p03350 Brassica napus
C04p34440 Brassica napus
C04p69550 Brassica napus
C06p24970 Brassica napus
CAN.G1071.3 Capsicum annuum
CAN.G1161.23 Capsicum annuum
CAN.G128.35 Capsicum annuum
CANSAT54G1212 Cannabis sativa
CANSAT64G1244 Cannabis sativa
CARHR137230 Cardamine hirsuta
CARHR168230 Cardamine hirsuta
Carub.0004s2453 Capsella rubella
Carub.0005s2477 Capsella rubella
Ca_01268_v3 Cicer arietinum L.
Ca_08509_v3 Cicer arietinum L.
CDE04G2038 Ceratophyllum demersum
CDE06G1592 Ceratophyllum demersum
CDE07G0613 Ceratophyllum demersum
Cfa016904 Carpinus fangiana
Ciclev10013062m.g Citrus clementina
Ciclev10017123m.g Citrus clementina
CiPaw.09G031700 Carya illinoinensis
CiPaw.10G027600 Carya illinoinensis
CiPaw.13G167200 Carya illinoinensis
CiPaw.14G125600 Carya illinoinensis
ClCG03G013620 Citrullus lanatus
COL.COLO4_05614 Corchorus olitorius
COL.COLO4_36144 Corchorus olitorius
COL.COLO4_38439 Corchorus olitorius
Cpa.g.sc117.7 Carica papaya
Cpa.g.sc85.84 Carica papaya
CsaV3_1G042450 Cucumis sativus L.
CSS0007813 Camellia sinensis var. sinensis
CSS0013825 Camellia sinensis var. sinensis
CSS0050309 Camellia sinensis var. sinensis
Dinv08056 Davidia involucrata
Dinv14279 Davidia involucrata
Dinv24089 Davidia involucrata
Dinv36314 Davidia involucrata
Duzib093G0057 Durio zibethinus
Duzib106G0603 Durio zibethinus
Duzib128G0672 Durio zibethinus
Duzib150G0288 Durio zibethinus
Duzib168G0719 Durio zibethinus
Duzib170G0550 Durio zibethinus
ECA233G4615 Erigeron canadensis
ECA248G1427 Erigeron canadensis
ECA248G2310 Erigeron canadensis
EL10Ac3g06936 Beta vulgaris
Eucgr.B03652 Eucalyptus grandis
Eucgr.J00835 Eucalyptus grandis
Eucgr.K01829 Eucalyptus grandis
FAN02G0650 Fragaria x ananassa
FAN05G5233 Fragaria x ananassa
FAN11G3364 Fragaria x ananassa
FAN14G4169 Fragaria x ananassa
FAN14G5336 Fragaria x ananassa
FAN16G3054 Fragaria x ananassa
FAN21G3143 Fragaria x ananassa
FvH4_3g43480 Fragaria vesca
FvH4_6g22620 Fragaria vesca
FvH4_6g47460 Fragaria vesca
Glyma.03G143200 Glycine max
Glyma.11G129100 Glycine max
Glyma.12G053700 Glycine max
Glyma.13G343200 Glycine max
Glyma.15G031200 Glycine max
Glyma.19G146200 Glycine max
Gohir.A01G192100 Gossypium hirsutum
Gohir.A04G069200 Gossypium hirsutum
Gohir.A06G117700 Gossypium hirsutum
Gohir.A11G314200 Gossypium hirsutum
Gohir.D01G177900 Gossypium hirsutum
Gohir.D04G085264 Gossypium hirsutum
Gohir.D06G112200 Gossypium hirsutum
Gohir.D11G331400 Gossypium hirsutum
Gorai.002G225200 Gossypium raimondii
Gorai.006G067400 Gossypium raimondii
Gorai.007G362100 Gossypium raimondii
Gorai.010G128000 Gossypium raimondii
GSVIVG01010686001 Vitis vinifera
GSVIVG01033518001 Vitis vinifera
HanXRQChr01g0009661 Helianthus annuus
HanXRQChr01g0021081 Helianthus annuus
HanXRQChr02g0056741 Helianthus annuus
HanXRQChr13g0389311 Helianthus annuus
HanXRQChr13g0404251 Helianthus annuus
Haze_19967 Corylus avellana
Haze_23038 Corylus avellana
Hma1.2p1_0005F.1_g004220 Hydrangea macrophylla
Hma1.2p1_1169F.1_g263270 Hydrangea macrophylla
HPP92_007465 Vanilla planifolia
Lalb_Chr04g0259621 Lupinus albus
Lalb_Chr14g0372381 Lupinus albus
Lalb_Chr18g0047761 Lupinus albus
Lalb_Chr22g0352231 Lupinus albus
Lalb_Chr24g0396901 Lupinus albus
Lj1g0014700 Lotus japonicus
Lj3g0009151 Lotus japonicus
Lsat_1_v5_gn_5_164201 Lactuca sativa
Lsat_1_v5_gn_6_49741 Lactuca sativa
Manes.06G169100 Manihot esculenta
Manes.08G045200 Manihot esculenta
Manes.09G032900 Manihot esculenta
Manes.14G014800 Manihot esculenta
MBI01_g20397_MAGBIO Magnolia biondii
MBI02_g15228_MAGBIO Magnolia biondii
MBI02_g29739_MAGBIO Magnolia biondii
MBI04_g32793_MAGBIO Magnolia biondii
MBI07_g38549_MAGBIO Magnolia biondii
MBI11_g27114_MAGBIO Magnolia biondii
MBI12_g36980_MAGBIO Magnolia biondii
MBI13_g44547_MAGBIO Magnolia biondii
MBI14_g23622_MAGBIO Magnolia biondii
MBI18_g27541_MAGBIO Magnolia biondii
MD00G1084400 Malus domestica
MD03G1021700 Malus domestica
MD11G1024200 Malus domestica
MD12G1058100 Malus domestica
MD14G1059900 Malus domestica
Medtr2g098560 Medicago truncatula
Medtr7g092970 Medicago truncatula
MELO3C015682.2 Cucumis melo
Migut.D00550 Erythranthe guttata
Migut.K00050 Erythranthe guttata
Migut.N02291 Erythranthe guttata
MSTRG.17570 Avicennia marina
MSTRG.26092 Avicennia marina
MSTRG.6469 Avicennia marina
Nitab4.5_0000006g0620 Nicotiana tabacum
Nitab4.5_0000016g0320 Nicotiana tabacum
Nitab4.5_0000105g0010 Nicotiana tabacum
Nitab4.5_0001474g0010 Nicotiana tabacum
Nitab4.5_0001538g0060 Nicotiana tabacum
Nitab4.5_0004499g0020 Nicotiana tabacum
Nitab4.5_0004991g0020 Nicotiana tabacum
Nitab4.5_0007123g0010 Nicotiana tabacum
Nn2g15614 Nelumbo nucifera
Nn7g36038 Nelumbo nucifera
Oeu014058.2 Olea europaea
Oeu029224.1 Olea europaea
Oeu033191.1 Olea europaea
Oeu046476.1 Olea europaea
Oeu051247.1 Olea europaea
Oeu055815.1 Olea europaea
Oeu059767.1 Olea europaea
Oeu064334.1 Olea europaea
Os02g0717200 Oryza sativa ssp. japonica
Os06g0320300 Oryza sativa ssp. japonica
Peaxi162Scf00003g04316 Petunia axillaris
Peaxi162Scf00229g00134 Petunia axillaris
Peaxi162Scf00248g00031 Petunia axillaris
Peaxi162Scf00258g00114 Petunia axillaris
Peaxi162Scf00406g00114 Petunia axillaris
Peaxi162Scf74350g00001 Petunia axillaris
PGR119G0525 Punica granatum
PGR142G1629 Punica granatum
PGSC0003DMG400011434 Solanum tuberosum
PGSC0003DMG400017383 Solanum tuberosum
PGSC0003DMG400023675 Solanum tuberosum
Phvul.001G141100 Phaseolus vulgaris
Phvul.005G151900 Phaseolus vulgaris
Phvul.011G055600 Phaseolus vulgaris
Potri.001G015000 Populus trichocarpa
Potri.003G211200 Populus trichocarpa
Potri.T085200 Populus trichocarpa
Prupe.6G020200 Prunus persica
Prupe.7G074700 Prunus persica
Psat1g007440 Pisum sativum
Psat3g069480 Pisum sativum
PSO339G2218 Papaver somniferum
PSO384G0797 Papaver somniferum
PSO541G1056 Papaver somniferum
PSO675G7776 Papaver somniferum
QL01p007129 Quercus lobata
QL07p023255 Quercus lobata
RcHm_v2.0_Chr3g0480181 Rosa chinensis
RcHm_v2.0_Chr5g0077891 Rosa chinensis
Rhsim01G0189200 Rhododendron simsii
Rhsim03G0008800 Rhododendron simsii
Rhsim04G0097600 Rhododendron simsii
Sabra01G0010600 Salix brachista
Sabra03G0154000 Salix brachista
Sabra03G0156500 Salix brachista
SalBow1G0376 Salvia bowleyana
SalBow1G8670 Salvia bowleyana
SalBow6G3189 Salvia bowleyana
Sc09g0000420 Simmondsia chinensis
Sc13g0002170 Simmondsia chinensis
Sed0013064 Sechium edule
Sed0019726 Sechium edule
SEGI_06870 Sequoiadendron giganteum
SEGI_13070 Sequoiadendron giganteum
SGA_v2.0_scaffold274G46473 Striga asiatica
SGA_v2.0_scaffold94G28435 Striga asiatica
Solyc07g045250.1 Solanum lycopersicum
Solyc10g078710.1 Solanum lycopersicum
Solyc10g080450.3 Solanum lycopersicum
Sopen07g023800 Solanum pennellii
Sopen10g029330 Solanum pennellii
Sopen10g030990 Solanum pennellii
Sp4g24370 Schrenkiella parvula
Sp5g04790 Schrenkiella parvula
TAR369G1015 Trochodendron aralioides
TAR623G0302 Trochodendron aralioides
TAR633G2740 Trochodendron aralioides
TAR636G3241 Trochodendron aralioides
THA.LOC104802478 Tarenaya hassleriana
THA.LOC104824468 Tarenaya hassleriana
Thecc.05G169000 Theobroma cacao
Thecc.09G221400 Theobroma cacao
Thhalv10006306m.g Eutrema salsugineum
Thhalv10017384m.g Eutrema salsugineum
TPR.G18866 Trifolium pratense
TWI32G0211 Tripterygium wilfordii
TWI34G0028 Tripterygium wilfordii
TWI53G0638 Tripterygium wilfordii
TWI60G0941 Tripterygium wilfordii
TWI74G0336 Tripterygium wilfordii
vmacro09110 Vaccinium macrocarpon
VMungo1080G0530 Vigna mungo
VMungo1127G1293 Vigna mungo
VMungo1383G2553 Vigna mungo
VMungo1383G3051 Vigna mungo
Zm00001eb006280 Zea mays
Zm00001eb083130 Zea mays
Zm00001eb141300 Zea mays
Zm00001eb189020 Zea mays
Zm00001eb252770 Zea mays
Zm00001eb285300 Zea mays
Zm00001eb381760 Zea mays

User provided reference genes

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