Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p12200 Brassica napus
A07p34530 Brassica napus
Aa31LG10G8430 Aethionema arabicum
Aa31sc156G30 Aethionema arabicum
Actinidia17246 Actinidia chinensis
Actinidia35193 Actinidia chinensis
Actinidia35194 Actinidia chinensis
Actinidia38563 Actinidia chinensis
Ah.04g151870 Amaranthus hybridus
Ah.04g151880 Amaranthus hybridus
AL2G26890 Arabidopsis lyrata
Aqoxy3G04102 Aquilegia oxysepala
Aqoxy5G01006 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea
AT1G01150 Arabidopsis thaliana
AT1G68030 Arabidopsis thaliana
ATR0564G404 Amborella trichopoda
ATR0757G170 Amborella trichopoda
Atru.chr1.1043 Acer truncatum
Atru.chr1.61 Acer truncatum
Atru.chr1.63 Acer truncatum
Atru.chr6.3448 Acer truncatum
AUR62024404 Chenopodium quinoa
AUR62025099 Chenopodium quinoa
AUR62025998 Chenopodium quinoa
AUR62037152 Chenopodium quinoa
BcaB02g06607 Brassica carinata
BcaB03g15137 Brassica carinata
BcaC05g25588 Brassica carinata
BcaC08g46229 Brassica carinata
BcaNung05110 Brassica carinata
BolC5t30170H Brassica oleracea
BolC6t39229H Brassica oleracea
BraA06t24388Z Brassica rapa
C05p14440 Brassica napus
C06p41990 Brassica napus
CAN.G128.17 Capsicum annuum
CAN.G585.14 Capsicum annuum
CAN.G77.2 Capsicum annuum
CANSAT64G2375 Cannabis sativa
CANSAT80G0265 Cannabis sativa
CANSAT80G2456 Cannabis sativa
CARHR001320 Cardamine hirsuta
CARHR060680 Cardamine hirsuta
Carub.0001s0106 Capsella rubella
Carub.0002s1033 Capsella rubella
Carub.0002s1451 Capsella rubella
Ca_16324_v3 Cicer arietinum L.
Ca_26695_v3 Cicer arietinum L.
Cc05_g09830 Coffea canephora
Cc06_g16670 Coffea canephora
CDE02G2179 Ceratophyllum demersum
CDE02G3597 Ceratophyllum demersum
CDE11G0834 Ceratophyllum demersum
CDE12G0621 Ceratophyllum demersum
Cfa016855 Carpinus fangiana
Cfa016856 Carpinus fangiana
Cfa016857 Carpinus fangiana
Ciclev10004349m.g Citrus clementina
CiPaw.03G284600 Carya illinoinensis
CiPaw.09G035000 Carya illinoinensis
CiPaw.10G129800 Carya illinoinensis
ClCG02G003110 Citrullus lanatus
ClCG10G017130 Citrullus lanatus
COL.COLO4_19698 Corchorus olitorius
COL.COLO4_28664 Corchorus olitorius
Cpa.g.sc92.17 Carica papaya
CsaV3_3G039260 Cucumis sativus L.
CsaV3_7G002300 Cucumis sativus L.
CSS0018822 Camellia sinensis var. sinensis
CSS0020089 Camellia sinensis var. sinensis
CSS0026110 Camellia sinensis var. sinensis
CSS0027860 Camellia sinensis var. sinensis
CSS0044202 Camellia sinensis var. sinensis
CSS0049780 Camellia sinensis var. sinensis
DCAR_009054 Daucus carota
DCAR_010045 Daucus carota
DCAR_020474 Daucus carota
Dinv18078 Davidia involucrata
Dinv21332 Davidia involucrata
Dinv24130 Davidia involucrata
Duzib093G0277 Durio zibethinus
Duzib106G0995 Durio zibethinus
Duzib133G1113 Durio zibethinus
Duzib211G0533 Durio zibethinus
ECA233G6189 Erigeron canadensis
ECA236G0694 Erigeron canadensis
ECA246G4940 Erigeron canadensis
ECA247G2430 Erigeron canadensis
EL10Ac3g07024 Beta vulgaris
EL10Ac9g22351 Beta vulgaris
Eucgr.C04382 Eucalyptus grandis
Eucgr.H02945 Eucalyptus grandis
Eucgr.K01371 Eucalyptus grandis
Eucgr.L02969 Eucalyptus grandis
FAN02G1061 Fragaria x ananassa
FAN02G1477 Fragaria x ananassa
FAN05G1216 Fragaria x ananassa
FAN05G2298 Fragaria x ananassa
FAN05G2597 Fragaria x ananassa
FAN08G2173 Fragaria x ananassa
FAN09G0645 Fragaria x ananassa
FAN09G2397 Fragaria x ananassa
FAN09G4598 Fragaria x ananassa
FAN13G2553 Fragaria x ananassa
FAN14G3449 Fragaria x ananassa
FAN14G4953 Fragaria x ananassa
FAN14G5266 Fragaria x ananassa
FAN18G0342 Fragaria x ananassa
FAN18G4344 Fragaria x ananassa
FvH4_5g11840 Fragaria vesca
FvH4_6g23300 Fragaria vesca
FvH4_6g40210 Fragaria vesca
FvH4_6g51680 Fragaria vesca
Glyma.04G004700 Glycine max
Glyma.13G197800 Glycine max
Glyma.15G236400 Glycine max
Gohir.A07G088300 Gossypium hirsutum
Gohir.A09G123900 Gossypium hirsutum
Gohir.A11G146700 Gossypium hirsutum
Gohir.A12G098550 Gossypium hirsutum
Gohir.D07G093300 Gossypium hirsutum
Gohir.D09G120700 Gossypium hirsutum
Gohir.D11G153400 Gossypium hirsutum
Gohir.D12G101750 Gossypium hirsutum
Gorai.001G100000 Gossypium raimondii
Gorai.006G138200 Gossypium raimondii
Gorai.007G163500 Gossypium raimondii
Gorai.007G163600 Gossypium raimondii
Gorai.008G110900 Gossypium raimondii
GSVIVG01030142001 Vitis vinifera
GSVIVG01033321001 Vitis vinifera
HanXRQChr05g0132191 Helianthus annuus
HanXRQChr11g0329911 Helianthus annuus
HanXRQChr15g0491211 Helianthus annuus
Haze_12555 Corylus avellana
Haze_12569 Corylus avellana
Haze_19906 Corylus avellana
HPP92_005494 Vanilla planifolia
HPP92_005495 Vanilla planifolia
Hund08100 Selenicereus undatus
Hund24730 Selenicereus undatus
Lalb_Chr04g0259381 Lupinus albus
Lalb_Chr20g0110841 Lupinus albus
Lj5g0008192 Lotus japonicus
Lj5g0016725 Lotus japonicus
Lj6g0015125 Lotus japonicus
Lsat_1_v5_gn_8_35420 Lactuca sativa
Lsat_1_v5_gn_8_86081 Lactuca sativa
Lsat_1_v5_gn_9_103221 Lactuca sativa
Lsat_1_v5_gn_9_27420 Lactuca sativa
Manes.09G026400 Manihot esculenta
Manes.09G027501 Manihot esculenta
Manes.14G007105 Manihot esculenta
Manes.18G010900 Manihot esculenta
Mapoly0084s0085 Marchantia polymorpha
MBI12_g00013_MAGBIO Magnolia biondii
MD06G1218200 Malus domestica
MD09G1134000 Malus domestica
MD12G1067700 Malus domestica
MD12G1067800 Malus domestica
MD14G1067900 Malus domestica
Medtr2g005950 Medicago truncatula
Medtr3g082160 Medicago truncatula
MELO3C009670.2 Cucumis melo
MELO3C024174.2 Cucumis melo
Migut.C00538 Erythranthe guttata
Migut.D00049 Erythranthe guttata
Migut.D01681 Erythranthe guttata
Migut.M00522 Erythranthe guttata
MSTRG.15028 Avicennia marina
MSTRG.6732 Avicennia marina
MSTRG.9604 Avicennia marina
Nitab4.5_0001022g0060 Nicotiana tabacum
Nitab4.5_0002220g0010 Nicotiana tabacum
Nitab4.5_0004532g0010 Nicotiana tabacum
Nitab4.5_0005201g0030 Nicotiana tabacum
Nitab4.5_0005559g0030 Nicotiana tabacum
Nitab4.5_0007468g0010 Nicotiana tabacum
Nn1g07679 Nelumbo nucifera
Nn3g19128 Nelumbo nucifera
Oeu033163.1 Olea europaea
Oeu051541.1 Olea europaea
Oeu052600.1 Olea europaea
Peaxi162Scf00052g01911 Petunia axillaris
Peaxi162Scf00111g00528 Petunia axillaris
Peaxi162Scf00398g00011 Petunia axillaris
Peaxi162Scf00650g00229 Petunia axillaris
PGR004G2549 Punica granatum
PGR042G2775 Punica granatum
PGR044G1376 Punica granatum
PGR142G3066 Punica granatum
PGSC0003DMG400011962 Solanum tuberosum
PGSC0003DMG400018039 Solanum tuberosum
PGSC0003DMG400023718 Solanum tuberosum
PGSC0003DMG400031096 Solanum tuberosum
Phvul.006G012311 Phaseolus vulgaris
Phvul.007G255000 Phaseolus vulgaris
Potri.002G005600 Populus trichocarpa
Potri.006G054401 Populus trichocarpa
Potri.016G053300 Populus trichocarpa
Prupe.3G192500 Prunus persica
Prupe.5G223300 Prunus persica
Prupe.7G066400 Prunus persica
Psat5g110680 Pisum sativum
Psat5g171320 Pisum sativum
Psat6g126680 Pisum sativum
PSO063G1512 Papaver somniferum
PSO541G3271 Papaver somniferum
PSO675G6033 Papaver somniferum
QL02p026723 Quercus lobata
QL07p021424 Quercus lobata
QL08p056700 Quercus lobata
QL93p2012_0015 Quercus lobata
QL93p2012_0041 Quercus lobata
RcHm_v2.0_Chr2g0155231 Rosa chinensis
RcHm_v2.0_Chr3g0447711 Rosa chinensis
RcHm_v2.0_Chr3g0481261 Rosa chinensis
RcHm_v2.0_Chr5g0000181 Rosa chinensis
Rhsim04G0031500 Rhododendron simsii
Rhsim04G0100400 Rhododendron simsii
Sabra02G0004000 Salix brachista
Sabra06G0038500 Salix brachista
Sabra16G0056600 Salix brachista
SalBow5G2191 Salvia bowleyana
SalBow7G2975 Salvia bowleyana
Sc19g0006700 Simmondsia chinensis
Sc21g0000360 Simmondsia chinensis
Sc25g0005240 Simmondsia chinensis
Sed0002535 Sechium edule
Sed0017433 Sechium edule
Sed0021406 Sechium edule
SEGI_17132 Sequoiadendron giganteum
SEGI_31108 Sequoiadendron giganteum
SGA_v2.0_scaffold135G34972 Striga asiatica
SGA_v2.0_scaffold70G23601 Striga asiatica
SHI33651 Sapria himalayana
SHI33652 Sapria himalayana
Solyc03g063720.4 Solanum lycopersicum
Solyc07g056120.3 Solanum lycopersicum
Solyc10g080300.1 Solanum lycopersicum
Sopen03g016980 Solanum pennellii
Sopen07g029480 Solanum pennellii
Sopen10g030860 Solanum pennellii
Sp5g23040 Schrenkiella parvula
TAR626G0091 Trochodendron aralioides
TAR629G1056 Trochodendron aralioides
THA.LOC104807903 Tarenaya hassleriana
THA.LOC104808828 Tarenaya hassleriana
THA.LOC104815384 Tarenaya hassleriana
THA.LOC104821902 Tarenaya hassleriana
THA.LOC104825577 Tarenaya hassleriana
THA.LOC104826636 Tarenaya hassleriana
Thecc.01G201900 Theobroma cacao
Thecc.05G161200 Theobroma cacao
Thecc.09G365200 Theobroma cacao
Thhalv10019541m.g Eutrema salsugineum
TPR.G10410 Trifolium pratense
TPR.G23127 Trifolium pratense
TWI36G1687 Tripterygium wilfordii
TWI38G0076 Tripterygium wilfordii
TWI74G0633 Tripterygium wilfordii
TWI77G0015 Tripterygium wilfordii
unitig_62.g23101 Utricularia gibba
unitig_744.g24381 Utricularia gibba
vmacro09089 Vaccinium macrocarpon
vmacro09463 Vaccinium macrocarpon
vmacro09464 Vaccinium macrocarpon
VMungo1127G0424 Vigna mungo

User provided reference genes

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