Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p34460 Brassica napus
A05p01220 Brassica napus
A09p69030 Brassica napus
A10p00670 Brassica napus
Aa31LG1G10610 Aethionema arabicum
Aa31LG1G27930 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.970 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.975 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.457 Anthoceros agrestis
Actinidia06141 Actinidia chinensis
Actinidia07973 Actinidia chinensis
Actinidia20251 Actinidia chinensis
Ah.05g179390 Amaranthus hybridus
AL1G11220 Arabidopsis lyrata
AL4G45980 Arabidopsis lyrata
Aqoxy5G04245 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0E4TYB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JA8H3U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JF2XAQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SBQR86 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDR5QN Arachis hypogaea
AT1G01240 Arabidopsis thaliana
AT2G46550 Arabidopsis thaliana
ATR0602G019 Amborella trichopoda
ATR0758G001 Amborella trichopoda
Atru.chr5.687 Acer truncatum
Atru.chr5.689 Acer truncatum
Atru.chr5.690 Acer truncatum
AUR62004509 Chenopodium quinoa
AUR62023446 Chenopodium quinoa
BcaC02g07017 Brassica carinata
BcaC02g07040 Brassica carinata
BcaC02g12672 Brassica carinata
BcaC06g35623 Brassica carinata
BcaC07g38455 Brassica carinata
BcaNung06659 Brassica carinata
BolC1t01259H Brassica oleracea
BolC4t21790H Brassica oleracea
BolC4t28710H Brassica oleracea
BolC7t41769H Brassica oleracea
BolC8t48865H Brassica oleracea
BolC8t52874H Brassica oleracea
BraA04t18904Z Brassica rapa
BraA05t19123Z Brassica rapa
BraA09t42240Z Brassica rapa
BraA10t42344Z Brassica rapa
C01p12830 Brassica napus
C04p01370 Brassica napus
C04p72220 Brassica napus
C05p00710 Brassica napus
C07p12840 Brassica napus
C08p12250 Brassica napus
C08p53600 Brassica napus
CAN.G1415.19 Capsicum annuum
CAN.G481.27 Capsicum annuum
CANSAT21G0730 Cannabis sativa
CANSAT56G3996 Cannabis sativa
CARHR001220 Cardamine hirsuta
CARHR141890 Cardamine hirsuta
Carub.0001s0097 Capsella rubella
Carub.0004s2927 Capsella rubella
Ca_09519_v3 Cicer arietinum L.
Ca_12783_v3 Cicer arietinum L.
Ca_12787_v3 Cicer arietinum L.
Ca_16719_v3 Cicer arietinum L.
Ca_23521_v3 Cicer arietinum L.
Ca_29819_v3 Cicer arietinum L.
CBR_g19532 Chara braunii
Cc02_g39570 Coffea canephora
CDE03G0022 Ceratophyllum demersum
CDE04G0480 Ceratophyllum demersum
CDE10G0158 Ceratophyllum demersum
Cfa003786 Carpinus fangiana
Cfa015972 Carpinus fangiana
Ciclev10019982m.g Citrus clementina
CiPaw.01G077700 Carya illinoinensis
CiPaw.02G041500 Carya illinoinensis
CiPaw.05G198300 Carya illinoinensis
CiPaw.06G026100 Carya illinoinensis
ClCG01G000370 Citrullus lanatus
ClCG05G000730 Citrullus lanatus
COL.COLO4_06227 Corchorus olitorius
COL.COLO4_16789 Corchorus olitorius
Cpa.g.sc96.42 Carica papaya
CsaV3_3G007950 Cucumis sativus L.
CsaV3_5G000450 Cucumis sativus L.
CSS0042345 Camellia sinensis var. sinensis
DCAR_005403 Daucus carota
DCAR_008947 Daucus carota
DCAR_025265 Daucus carota
Dinv32604 Davidia involucrata
Dinv34220 Davidia involucrata
Dinv35346 Davidia involucrata
Duzib133G1168 Durio zibethinus
Duzib138G1935 Durio zibethinus
ECA233G2756 Erigeron canadensis
ECA234G4012 Erigeron canadensis
ECA236G4255 Erigeron canadensis
EL10Ac1g00246 Beta vulgaris
Eucgr.D02384 Eucalyptus grandis
Eucgr.E00042 Eucalyptus grandis
FAN01G0420 Fragaria x ananassa
FAN01G1628 Fragaria x ananassa
FAN03G2932 Fragaria x ananassa
FAN06G0225 Fragaria x ananassa
FAN06G4279 Fragaria x ananassa
FAN10G1017 Fragaria x ananassa
FAN10G1192 Fragaria x ananassa
FAN10G2579 Fragaria x ananassa
FAN10G2775 Fragaria x ananassa
FvH4_7g16870 Fragaria vesca
FvH4_7g31981 Fragaria vesca
Glyma.03G258600 Glycine max
Glyma.04G234400 Glycine max
Glyma.06G130200 Glycine max
Glyma.07G046850 Glycine max
Glyma.07G054600 Glycine max
Glyma.16G023400 Glycine max
Glyma.19G257200 Glycine max
Gohir.A07G136700 Gossypium hirsutum
Gohir.A11G098000 Gossypium hirsutum
Gohir.D07G142033 Gossypium hirsutum
Gohir.D11G102700 Gossypium hirsutum
Gorai.001G153700 Gossypium raimondii
Gorai.007G109800 Gossypium raimondii
GSVIVG01027170001 Vitis vinifera
GSVIVG01038568001 Vitis vinifera
HanXRQChr04g0120481 Helianthus annuus
HanXRQChr06g0170771 Helianthus annuus
HanXRQChr17g0563361 Helianthus annuus
Haze_00195 Corylus avellana
Haze_00503 Corylus avellana
Haze_15675 Corylus avellana
Hma1.2p1_0101F.1_g049300 Hydrangea macrophylla
Hma1.2p1_1587F.1_g292240 Hydrangea macrophylla
HPP92_006333 Vanilla planifolia
HPP92_024144 Vanilla planifolia
HPP92_027872 Vanilla planifolia
HPP92_027873 Vanilla planifolia
Hund16720 Selenicereus undatus
Hund27187 Selenicereus undatus
Lalb_Chr08g0240141 Lupinus albus
Lalb_Chr10g0100631 Lupinus albus
Lalb_Chr18g0044531 Lupinus albus
Lalb_Chr23g0271621 Lupinus albus
Lj1A1019T45 Lonicera japonica
Lj1A1021T48 Lonicera japonica
Lj1g0006160 Lotus japonicus
Lj1g0018688 Lotus japonicus
Lj3g0016740 Lotus japonicus
Lj9A600T51 Lonicera japonica
Lsat_1_v5_gn_4_33681 Lactuca sativa
Lsat_1_v5_gn_7_880 Lactuca sativa
Lsat_1_v5_gn_8_5381 Lactuca sativa
Manes.01G244700 Manihot esculenta
Manes.05G021400 Manihot esculenta
MBI06_g44133_MAGBIO Magnolia biondii
MBI06_g44135_MAGBIO Magnolia biondii
MBI06_g46367_MAGBIO Magnolia biondii
MBI06_g46369_MAGBIO Magnolia biondii
MBI07_g24772_MAGBIO Magnolia biondii
MD01G1083700 Malus domestica
MD01G1222700 Malus domestica
MD07G1152400 Malus domestica
MD07G1293300 Malus domestica
Medtr1g007840 Medicago truncatula
Medtr3g091770 Medicago truncatula
Medtr7g117715 Medicago truncatula
Medtr8g027430 Medicago truncatula
MELO3C005891.2 Cucumis melo
MELO3C006013.2 Cucumis melo
Migut.B01888 Erythranthe guttata
Migut.F01021 Erythranthe guttata
Migut.N01533 Erythranthe guttata
MSTRG.17356 Avicennia marina
MSTRG.4803 Avicennia marina
Nitab4.5_0000548g0050 Nicotiana tabacum
Nitab4.5_0001763g0040 Nicotiana tabacum
Nitab4.5_0005491g0030 Nicotiana tabacum
Nitab4.5_0016714g0010 Nicotiana tabacum
Nn1g00295 Nelumbo nucifera
Nn3g18948 Nelumbo nucifera
Oeu004960.1 Olea europaea
Oeu043222.3 Olea europaea
Oeu055197.1 Olea europaea
Os08g0400300 Oryza sativa ssp. japonica
Os09g0363500 Oryza sativa ssp. japonica
Peaxi162Scf00345g00121 Petunia axillaris
Peaxi162Scf00740g00133 Petunia axillaris
PGR031G2287 Punica granatum
PGR142G1123 Punica granatum
PGSC0003DMG400000234 Solanum tuberosum
PGSC0003DMG400018529 Solanum tuberosum
Phvul.006G114600 Phaseolus vulgaris
Phvul.009G051400 Phaseolus vulgaris
Potri.002G173200 Populus trichocarpa
Potri.014G100300 Populus trichocarpa
Pp3c25_15300 Physcomitrium patens
Pp3c27_7810 Physcomitrium patens
Pp3c6_1370 Physcomitrium patens
Prupe.2G190700 Prunus persica
Prupe.2G313100 Prunus persica
Psat3g001840 Pisum sativum
Psat4g214720 Pisum sativum
Psat5g076120 Pisum sativum
Psat6g035000 Pisum sativum
PSO063G3833 Papaver somniferum
PSO135G0353 Papaver somniferum
PSO170G6198 Papaver somniferum
PSO384G4994 Papaver somniferum
QL08p045708 Quercus lobata
QL09p007993 Quercus lobata
QL09p008162 Quercus lobata
RcHm_v2.0_Chr1g0360101 Rosa chinensis
RcHm_v2.0_Chr1g0381491 Rosa chinensis
Rhsim07G0003100 Rhododendron simsii
Rhsim09G0206500 Rhododendron simsii
Sabra02G0140100 Salix brachista
Sabra14G0073700 Salix brachista
SalBow2G2074 Salvia bowleyana
SalBow3G4588 Salvia bowleyana
SalBow5G3999 Salvia bowleyana
Sc01g0002540 Simmondsia chinensis
Sed0009044 Sechium edule
Sed0020856 Sechium edule
Sed0024917 Sechium edule
SEGI_02674 Sequoiadendron giganteum
SEGI_03484 Sequoiadendron giganteum
SEGI_39687 Sequoiadendron giganteum
SGA_v2.0_scaffold22G09959 Striga asiatica
SGA_v2.0_scaffold232G43547 Striga asiatica
SGA_v2.0_scaffold43G16346 Striga asiatica
SGA_v2.0_scaffold55G19782 Striga asiatica
Solyc01g096100.2 Solanum lycopersicum
Solyc03g083000.3 Solanum lycopersicum
Sopen01g039820 Solanum pennellii
Sopen03g022810 Solanum pennellii
Sp1g01040 Schrenkiella parvula
Sp4g28600 Schrenkiella parvula
TAR375G0091 Trochodendron aralioides
TAR629G0955 Trochodendron aralioides
TAR636G1771 Trochodendron aralioides
THA.LOC104802082 Tarenaya hassleriana
THA.LOC104817374 Tarenaya hassleriana
THA.LOC104825884 Tarenaya hassleriana
Thecc.01G340300 Theobroma cacao
Thecc.03G201000 Theobroma cacao
Thhalv10001490m.g Eutrema salsugineum
Thhalv10008123m.g Eutrema salsugineum
TPR.G18768 Trifolium pratense
TPR.G20230 Trifolium pratense
TPR.G24528 Trifolium pratense
TPR.G4799 Trifolium pratense
TWI14G0206 Tripterygium wilfordii
TWI39G1004 Tripterygium wilfordii
TWI59G1200 Tripterygium wilfordii
unitig_21.g20561 Utricularia gibba
unitig_21.g20562 Utricularia gibba
unitig_21.g20563 Utricularia gibba
unitig_43.g31045 Utricularia gibba
unitig_45.g31546 Utricularia gibba
unitig_578.g16501 Utricularia gibba
unitig_578.g16502 Utricularia gibba
unitig_744.g24428 Utricularia gibba
vmacro10130 Vaccinium macrocarpon
VMungo0331G0327 Vigna mungo
VMungo0540G0341 Vigna mungo
VMungo1309G1756 Vigna mungo
Zm00001eb042150 Zea mays
Zm00001eb098610 Zea mays
Zm00001eb310970 Zea mays

User provided reference genes

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