Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01900 Brassica napus
A02p01910 Brassica napus
A03p05960 Brassica napus
A10p24820 Brassica napus
Aa31LG3G14280 Aethionema arabicum
Aa31LG3G14290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis
Actinidia22113 Actinidia chinensis
Actinidia30582 Actinidia chinensis
Actinidia30583 Actinidia chinensis
Ah.03g135540 Amaranthus hybridus
Ah.06g186900 Amaranthus hybridus
Ah.06g186920 Amaranthus hybridus
AL6G24030 Arabidopsis lyrata
AL6G24040 Arabidopsis lyrata
Aqoxy5G03072 Aquilegia oxysepala
Aqoxy5G03073 Aquilegia oxysepala
Aqoxy5G03074 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea
AT5G13410 Arabidopsis thaliana
AT5G13420 Arabidopsis thaliana
ATR0582G095 Amborella trichopoda
ATR0582G307 Amborella trichopoda
Atru.chr12.1428 Acer truncatum
Atru.chr12.1429 Acer truncatum
AUR62005716 Chenopodium quinoa
AUR62028839 Chenopodium quinoa
AUR62041001 Chenopodium quinoa
BcaB01g05361 Brassica carinata
BcaC04g19118 Brassica carinata
BcaNung01156 Brassica carinata
BcaNung01157 Brassica carinata
BcaNung01882 Brassica carinata
BolC2t06553H Brassica oleracea
BolC2t06554H Brassica oleracea
BolC3t13199H Brassica oleracea
BolC3t13348H Brassica oleracea
BolC9t59208H Brassica oleracea
BraA02t05163Z Brassica rapa
BraA02t05164Z Brassica rapa
BraA03t09933Z Brassica rapa
BraA10t44546Z Brassica rapa
C02p06120 Brassica napus
C02p06130 Brassica napus
C03p07000 Brassica napus
C03p08430 Brassica napus
C03p08440 Brassica napus
C09p63670 Brassica napus
CAN.G624.1 Capsicum annuum
CAN.G624.2 Capsicum annuum
CANSAT01G0579 Cannabis sativa
CANSAT80G1997 Cannabis sativa
CARHR200010 Cardamine hirsuta
CARHR200020 Cardamine hirsuta
Carub.0006s1157 Capsella rubella
Carub.0006s1158 Capsella rubella
Ca_04094_v3 Cicer arietinum L.
Ca_07032_v3 Cicer arietinum L.
Ca_16823_v3 Cicer arietinum L.
CBR_g38077 Chara braunii
CBR_g51451 Chara braunii
Cc11_g14950 Coffea canephora
Cc11_g14960 Coffea canephora
CDE05G2158 Ceratophyllum demersum
CDE05G3080 Ceratophyllum demersum
CDE06G1087 Ceratophyllum demersum
Cfa009455 Carpinus fangiana
Cfa009456 Carpinus fangiana
Ciclev10004979m.g Citrus clementina
Ciclev10005642m.g Citrus clementina
CiPaw.05G100600 Carya illinoinensis
CiPaw.05G100700 Carya illinoinensis
CiPaw.06G109900 Carya illinoinensis
ClCG06G013000 Citrullus lanatus
ClCG07G011930 Citrullus lanatus
ClCG07G011940 Citrullus lanatus
ClCG07G011950 Citrullus lanatus
Cpa.g.sc2215.1 Carica papaya
Cpa.g.sc38.65 Carica papaya
Cpa.g.sc38.67 Carica papaya
Cre02.g095122 Chlamydomonas reinhardtii
Cre12.g534700 Chlamydomonas reinhardtii
CsaV3_1G031160 Cucumis sativus L.
CsaV3_1G031170 Cucumis sativus L.
CsaV3_4G002210 Cucumis sativus L.
CsaV3_4G002230 Cucumis sativus L.
CSS0030444 Camellia sinensis var. sinensis
CSS0032033 Camellia sinensis var. sinensis
CSS0032961 Camellia sinensis var. sinensis
DCAR_024636 Daucus carota
DCAR_026442 Daucus carota
Dinv03336 Davidia involucrata
Dinv17538 Davidia involucrata
Dinv17539 Davidia involucrata
Duzib052G0101 Durio zibethinus
Duzib132G1053 Durio zibethinus
ECA246G0169 Erigeron canadensis
EL10Ac6g13612 Beta vulgaris
EL10Ac7g17008 Beta vulgaris
EL10Ac7g17009 Beta vulgaris
Eucgr.G01978 Eucalyptus grandis
Eucgr.G01979 Eucalyptus grandis
Eucgr.H00650 Eucalyptus grandis
FAN07G2580 Fragaria x ananassa
FAN07G2873 Fragaria x ananassa
FAN12G2192 Fragaria x ananassa
FAN17G0051 Fragaria x ananassa
FvH4_4g22550 Fragaria vesca
FvH4_4g22560 Fragaria vesca
Glyma.02G090600 Glycine max
Glyma.05G199800 Glycine max
Glyma.08G007300 Glycine max
Glyma.08G362900 Glycine max
Glyma.15G205533 Glycine max
Glyma.18G292600 Glycine max
Glyma.18G299100 Glycine max
Gohir.A04G101700 Gossypium hirsutum
Gohir.A04G101800 Gossypium hirsutum
Gohir.D04G140900 Gossypium hirsutum
Gohir.D04G141000 Gossypium hirsutum
Gorai.012G125900 Gossypium raimondii
Gorai.012G126000 Gossypium raimondii
GSVIVG01001098001 Vitis vinifera
GSVIVG01001099001 Vitis vinifera
HanXRQChr06g0175161 Helianthus annuus
HanXRQChr06g0175171 Helianthus annuus
HanXRQChr10g0304361 Helianthus annuus
HanXRQChr17g0540381 Helianthus annuus
Haze_12509 Corylus avellana
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla
HPP92_009801 Vanilla planifolia
HPP92_024421 Vanilla planifolia
Hund14581 Selenicereus undatus
Lalb_Chr04g0257301 Lupinus albus
Lalb_Chr04g0257311 Lupinus albus
Lalb_Chr10g0091111 Lupinus albus
Lalb_Chr10g0091121 Lupinus albus
Lalb_Chr13g0296941 Lupinus albus
Lj1g0015804 Lotus japonicus
Lj1g0025256 Lotus japonicus
Lj2g0022028 Lotus japonicus
Lj4g0027400 Lotus japonicus
Lj6A840G36 Lonicera japonica
Lj6C840T10 Lonicera japonica
Lsat_1_v5_gn_3_32621 Lactuca sativa
Lsat_1_v5_gn_3_32661 Lactuca sativa
Manes.08G100500 Manihot esculenta
Manes.08G100600 Manihot esculenta
Manes.09G188600 Manihot esculenta
Mapoly0061s0100 Marchantia polymorpha
Mapoly0092s0071 Marchantia polymorpha
Mapoly0092s0072 Marchantia polymorpha
Mapoly0092s0073 Marchantia polymorpha
Mapoly0189s0003 Marchantia polymorpha
MBI07_g35982_MAGBIO Magnolia biondii
MBI07_g48060_MAGBIO Magnolia biondii
MBI11_g34559_MAGBIO Magnolia biondii
MCO06G148 Micromonas commoda
MCO11G048 Micromonas commoda
MD13G1131400 Malus domestica
MD13G1131500 Malus domestica
MD16G1141700 Malus domestica
MD16G1141800 Malus domestica
Medtr7g006560 Medicago truncatula
Medtr7g006570 Medicago truncatula
Medtr8g096130 Medicago truncatula
MELO3C017506.2 Cucumis melo
MELO3C017816.2 Cucumis melo
MELO3C017817.2 Cucumis melo
Migut.K01048 Erythranthe guttata
Migut.K01049 Erythranthe guttata
MSTRG.449 Avicennia marina
MSTRG.8058 Avicennia marina
MSTRG.8059 Avicennia marina
Nitab4.5_0002569g0030 Nicotiana tabacum
Nitab4.5_0002569g0040 Nicotiana tabacum
Nitab4.5_0004349g0030 Nicotiana tabacum
Nitab4.5_0004349g0040 Nicotiana tabacum
Nn4g22124 Nelumbo nucifera
Oeu010257.1 Olea europaea
Oeu010258.1 Olea europaea
Os01g0926300 Oryza sativa ssp. japonica
Os07g0133700 Oryza sativa ssp. japonica
Peaxi162Scf00842g00319 Petunia axillaris
Peaxi162Scf00842g00418 Petunia axillaris
PGR119G1329 Punica granatum
PGR119G1456 Punica granatum
PGSC0003DMG401028027 Solanum tuberosum
PGSC0003DMG402028027 Solanum tuberosum
Phvul.002G281000 Phaseolus vulgaris
Phvul.008G003600 Phaseolus vulgaris
Phvul.008G009400 Phaseolus vulgaris
Potri.001G068200 Populus trichocarpa
Potri.001G068300 Populus trichocarpa
Potri.003G161900 Populus trichocarpa
Pp3c16_12110 Physcomitrium patens
Pp3c26_4790 Physcomitrium patens
Pp3c3_15390 Physcomitrium patens
Pp3c4_25380 Physcomitrium patens
Pp3c5_13790 Physcomitrium patens
PRCOL_00000716 Prasinoderma coloniale
PRCOL_00003949 Prasinoderma coloniale
Prupe.1G214100 Prunus persica
Prupe.1G214200 Prunus persica
Psat3g206960 Pisum sativum
Psat3g207000 Pisum sativum
PSO017G2800 Papaver somniferum
PSO017G4233 Papaver somniferum
PSO478G3355 Papaver somniferum
QL01p019412 Quercus lobata
QL02p011811 Quercus lobata
QL03p049029 Quercus lobata
QL03p049039 Quercus lobata
RcHm_v2.0_Chr4g0428781 Rosa chinensis
RcHm_v2.0_Chr4g0428801 Rosa chinensis
Rhsim12G0017000 Rhododendron simsii
Rhsim12G0017100 Rhododendron simsii
Sabra01G0047500 Salix brachista
Sabra03G0117600 Salix brachista
SalBow2G0960 Salvia bowleyana
Sc11g0000070 Simmondsia chinensis
Sc11g0000080 Simmondsia chinensis
Sed0000476 Sechium edule
Sed0003563 Sechium edule
Sed0016874 Sechium edule
SEGI_23050 Sequoiadendron giganteum
SEGI_31132 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00590 Striga asiatica
SGA_v2.0_scaffold258G45768 Striga asiatica
SGA_v2.0_scaffold258G45770 Striga asiatica
SGA_v2.0_scaffold4G02418 Striga asiatica
SGA_v2.0_scaffold528G52739 Striga asiatica
SHI04110 Sapria himalayana
SMO137G0309 Selaginella moellendorffii
SMO367G1271 Selaginella moellendorffii
Solyc11g033284.1 Solanum lycopersicum
Solyc11g033288.1 Solanum lycopersicum
Sopen11g017130 Solanum pennellii
Sopen11g017140 Solanum pennellii
Sp6g30600 Schrenkiella parvula
Sp6g30610 Schrenkiella parvula
TAR371G0123 Trochodendron aralioides
TAR622G1298 Trochodendron aralioides
TAR629G1443 Trochodendron aralioides
THA.LOC104807252 Tarenaya hassleriana
THA.LOC104816706 Tarenaya hassleriana
THA.LOC104825606 Tarenaya hassleriana
Thecc.02G191300 Theobroma cacao
Thecc.02G191400 Theobroma cacao
Thhalv10013572m.g Eutrema salsugineum
Thhalv10014743m.g Eutrema salsugineum
TPR.G12900 Trifolium pratense
TPR.G9718 Trifolium pratense
TPR.G9727 Trifolium pratense
TWI18G0725 Tripterygium wilfordii
TWI36G1422 Tripterygium wilfordii
TWI36G1656 Tripterygium wilfordii
TWI75G1838 Tripterygium wilfordii
unitig_8.g2893 Utricularia gibba
vmacro01016 Vaccinium macrocarpon
vmacro01017 Vaccinium macrocarpon
vmacro08874 Vaccinium macrocarpon
VMungo0251G2964 Vigna mungo
VMungo1383G1406 Vigna mungo
VMungo1383G2635 Vigna mungo
Zm00001eb040970 Zea mays
Zm00001eb142730 Zea mays
Zm00001eb363880 Zea mays

User provided reference genes

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