Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p30160 Brassica napus
Aa31LG9G14470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2797 Anthoceros agrestis
Actinidia10288 Actinidia chinensis
Actinidia13754 Actinidia chinensis
Actinidia15635 Actinidia chinensis
Actinidia30188 Actinidia chinensis
Actinidia33164 Actinidia chinensis
Ah.03g147050 Amaranthus hybridus
AL3G23510 Arabidopsis lyrata
AL6G42360 Arabidopsis lyrata
Aqoxy3G04213 Aquilegia oxysepala
Aqoxy400s001 Aquilegia oxysepala
Aqoxy6G00519 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0N64XT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.158MUU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5B6TP6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8HX7TR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.94R5ZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A3XBSF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DEE1GH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JL876H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MG346Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XG11M2 Arachis hypogaea
AT3G11920 Arabidopsis thaliana
AT4G08550 Arabidopsis thaliana
ATR0564G367 Amborella trichopoda
ATR0618G407 Amborella trichopoda
Atru.chr11.1088 Acer truncatum
Atru.chr13.1291 Acer truncatum
AUR62003435 Chenopodium quinoa
AUR62029409 Chenopodium quinoa
AUR62029410 Chenopodium quinoa
BcaB01g01356 Brassica carinata
BcaB04g21111 Brassica carinata
BcaC04g20914 Brassica carinata
BcaC09g48188 Brassica carinata
BolC1t05282H Brassica oleracea
BolC9t56635H Brassica oleracea
BraA01t04153Z Brassica rapa
BraA09t38580Z Brassica rapa
C09p37980 Brassica napus
CAN.G1131.2 Capsicum annuum
CAN.G282.76 Capsicum annuum
CAN.G617.13 Capsicum annuum
CANSAT25G3572 Cannabis sativa
CANSAT78G1958 Cannabis sativa
CARHR086450 Cardamine hirsuta
CARHR259580 Cardamine hirsuta
Carub.0003s1124 Capsella rubella
Carub.0006s2709 Capsella rubella
Ca_12510_v3 Cicer arietinum L.
Ca_23784_v3 Cicer arietinum L.
Ca_26315_v3 Cicer arietinum L.
Ca_29514_v3 Cicer arietinum L.
CBR_g46710 Chara braunii
Cc10_g05980 Coffea canephora
Cc11_g02640 Coffea canephora
CDE02G0322 Ceratophyllum demersum
CDE04G3609 Ceratophyllum demersum
CDE07G2007 Ceratophyllum demersum
CDE08G1093 Ceratophyllum demersum
Cfa013461 Carpinus fangiana
Cfa015939 Carpinus fangiana
Cfa021325 Carpinus fangiana
Ciclev10000226m.g Citrus clementina
Ciclev10004570m.g Citrus clementina
CiPaw.05G165800 Carya illinoinensis
CiPaw.05G231600 Carya illinoinensis
ClCG01G007080 Citrullus lanatus
ClCG11G008000 Citrullus lanatus
COL.COLO4_16505 Corchorus olitorius
COL.COLO4_27652 Corchorus olitorius
Cpa.g.sc2.110 Carica papaya
Cpa.g.sc49.109 Carica papaya
Cre06.g278183 Chlamydomonas reinhardtii
CsaV3_2G033620 Cucumis sativus L.
CsaV3_5G017500 Cucumis sativus L.
CSS0022251 Camellia sinensis var. sinensis
CSS0023943 Camellia sinensis var. sinensis
CSS0029428 Camellia sinensis var. sinensis
CSS0029842 Camellia sinensis var. sinensis
DCAR_026860 Daucus carota
DCAR_030333 Daucus carota
DCAR_030336 Daucus carota
Dinv26530 Davidia involucrata
Dinv44726 Davidia involucrata
Duzib041G0327 Durio zibethinus
Duzib248G0885 Durio zibethinus
Duzib251G0350 Durio zibethinus
Duzib268G1608 Durio zibethinus
ECA246G0504 Erigeron canadensis
ECA247G0741 Erigeron canadensis
EL10Ac6g15413 Beta vulgaris
Eucgr.F04387 Eucalyptus grandis
Eucgr.J01833 Eucalyptus grandis
FAN04G0975 Fragaria x ananassa
FAN07G1661 Fragaria x ananassa
FAN08G3626 Fragaria x ananassa
FAN12G3719 Fragaria x ananassa
FAN13G0548 Fragaria x ananassa
FAN17G0283 Fragaria x ananassa
FAN18G2956 Fragaria x ananassa
FAN22G1547 Fragaria x ananassa
FvH4_4g36430 Fragaria vesca
FvH4_5g38290 Fragaria vesca
Glyma.03G019500 Glycine max
Glyma.06G107200 Glycine max
Glyma.07G081400 Glycine max
Glyma.09G280900 Glycine max
Glyma.20G005300 Glycine max
Gohir.A01G186900 Gossypium hirsutum
Gohir.A03G110600 Gossypium hirsutum
Gohir.A05G230500 Gossypium hirsutum
Gohir.A12G155400 Gossypium hirsutum
Gohir.A13G026400 Gossypium hirsutum
Gohir.D01G182700 Gossypium hirsutum
Gohir.D02G135300 Gossypium hirsutum
Gohir.D05G233000 Gossypium hirsutum
Gohir.D12G158500 Gossypium hirsutum
Gohir.D13G025200 Gossypium hirsutum
Gorai.002G219700 Gossypium raimondii
Gorai.005G151400 Gossypium raimondii
Gorai.008G171400 Gossypium raimondii
Gorai.009G241100 Gossypium raimondii
Gorai.013G028400 Gossypium raimondii
GSVIVG01008966001 Vitis vinifera
GSVIVG01010232001 Vitis vinifera
HanXRQChr04g0112921 Helianthus annuus
HanXRQChr06g0175301 Helianthus annuus
HanXRQChr17g0540601 Helianthus annuus
Haze_00553 Corylus avellana
Haze_01547 Corylus avellana
Haze_04919 Corylus avellana
Haze_04923 Corylus avellana
Haze_06629 Corylus avellana
Haze_06630 Corylus avellana
Hma1.2p1_0002F.1_g002580 Hydrangea macrophylla
Hma1.2p1_0054F.1_g031160 Hydrangea macrophylla
Hma1.2p1_0115F.1_g056070 Hydrangea macrophylla
Hma1.2p1_0276F.1_g111360 Hydrangea macrophylla
Hma1.2p1_0853F.1_g228760 Hydrangea macrophylla
Hma1.2p1_2760F.1_g328080 Hydrangea macrophylla
HPP92_013080 Vanilla planifolia
HPP92_022525 Vanilla planifolia
Hund04297 Selenicereus undatus
Lalb_Chr08g0241801 Lupinus albus
Lalb_Chr10g0095111 Lupinus albus
Lalb_Chr10g0095121 Lupinus albus
Lalb_Chr10g0102091 Lupinus albus
Lalb_Chr10g0102101 Lupinus albus
Lalb_Chr11g0065571 Lupinus albus
Lalb_Chr17g0340081 Lupinus albus
Lj1g0023435 Lotus japonicus
Lj1g0024078 Lotus japonicus
Lj2g0027231 Lotus japonicus
Lj3A853T79 Lonicera japonica
Lj3g0004663 Lotus japonicus
Lj4A109T46 Lonicera japonica
Lj4A711G29 Lonicera japonica
Lsat_1_v5_gn_3_29021 Lactuca sativa
Lsat_1_v5_gn_3_33481 Lactuca sativa
Manes.07G078200 Manihot esculenta
Manes.18G071400 Manihot esculenta
Mapoly0021s0140 Marchantia polymorpha
MBI05_g36574_MAGBIO Magnolia biondii
MBI06_g35040_MAGBIO Magnolia biondii
MCO06G247 Micromonas commoda
MCO13G249 Micromonas commoda
MD08G1174700 Malus domestica
MD13G1009300 Malus domestica
MD15G1361400 Malus domestica
MD16G1007300 Malus domestica
Medtr1g035690 Medicago truncatula
Medtr3g073590 Medicago truncatula
Medtr5g061340 Medicago truncatula
Medtr5g066810 Medicago truncatula
Medtr8g033290 Medicago truncatula
MELO3C005206.2 Cucumis melo
MELO3C008134.2 Cucumis melo
Migut.E00587 Erythranthe guttata
Migut.N02917 Erythranthe guttata
Migut.O00732 Erythranthe guttata
MSTRG.2088 Avicennia marina
MSTRG.22133 Avicennia marina
MSTRG.952 Avicennia marina
Nitab4.5_0000069g0590 Nicotiana tabacum
Nitab4.5_0001915g0130 Nicotiana tabacum
Nitab4.5_0003304g0010 Nicotiana tabacum
Nitab4.5_0004952g0030 Nicotiana tabacum
Nn1g05243 Nelumbo nucifera
Nn3g18670 Nelumbo nucifera
Nn5g28977 Nelumbo nucifera
Oeu024575.1 Olea europaea
Oeu044036.1 Olea europaea
Oeu061467.1 Olea europaea
Oeu061723.1 Olea europaea
Os06g0224200 Oryza sativa ssp. japonica
Os10g0482900 Oryza sativa ssp. japonica
Peaxi162Scf00097g00159 Petunia axillaris
Peaxi162Scf00756g00437 Petunia axillaris
PGR044G0978 Punica granatum
PGR044G2535 Punica granatum
PGSC0003DMG400016401 Solanum tuberosum
PGSC0003DMG400027565 Solanum tuberosum
Phvul.003G007200 Phaseolus vulgaris
Phvul.008G169300 Phaseolus vulgaris
Phvul.009G027000 Phaseolus vulgaris
Phvul.010G087800 Phaseolus vulgaris
Potri.002G091200 Populus trichocarpa
Potri.008G144800 Populus trichocarpa
Potri.010G097600 Populus trichocarpa
PRCOL_00004185 Prasinoderma coloniale
Prupe.1G343400 Prunus persica
Prupe.1G508800 Prunus persica
Psat2g076480 Pisum sativum
Psat4g198160 Pisum sativum
Psat5g135920 Pisum sativum
Psat6g098280 Pisum sativum
PSO063G3866 Papaver somniferum
PSO541G0852 Papaver somniferum
PSO675G1410 Papaver somniferum
PSO782G4666 Papaver somniferum
QL03p042157 Quercus lobata
QL12p035606 Quercus lobata
RcHm_v2.0_Chr4g0446191 Rosa chinensis
RcHm_v2.0_Chr7g0240291 Rosa chinensis
Rhsim05G0121200 Rhododendron simsii
Rhsim06G0086800 Rhododendron simsii
Rhsim09G0076200 Rhododendron simsii
Sabra02G0072000 Salix brachista
Sabra08G0109900 Salix brachista
Sabra10G0069900 Salix brachista
Sabra10G0070000 Salix brachista
SalBow2G1611 Salvia bowleyana
SalBow7G3787 Salvia bowleyana
Sc04g0006240 Simmondsia chinensis
Sed0010931 Sechium edule
Sed0016314 Sechium edule
Sed0021130 Sechium edule
SEGI_16976 Sequoiadendron giganteum
SEGI_26221 Sequoiadendron giganteum
SGA_v2.0_scaffold140G35482 Striga asiatica
SGA_v2.0_scaffold140G35484 Striga asiatica
SMO140G0031 Selaginella moellendorffii
Solyc01g008130.4 Solanum lycopersicum
Solyc04g072380.3 Solanum lycopersicum
Sopen01g003680 Solanum pennellii
Sopen04g028550 Solanum pennellii
Sp3g10130 Schrenkiella parvula
Sp6g09270 Schrenkiella parvula
TAR625G0674 Trochodendron aralioides
TAR625G0929 Trochodendron aralioides
THA.LOC104806584 Tarenaya hassleriana
THA.LOC104806801 Tarenaya hassleriana
Thecc.02G310700 Theobroma cacao
Thecc.08G114400 Theobroma cacao
Thhalv10022227m.g Eutrema salsugineum
Thhalv10029425m.g Eutrema salsugineum
TPR.G14828 Trifolium pratense
TPR.G28953 Trifolium pratense
TPR.G30416 Trifolium pratense
TWI12G0529 Tripterygium wilfordii
TWI53G2028 Tripterygium wilfordii
TWI56G1298 Tripterygium wilfordii
TWI74G0817 Tripterygium wilfordii
unitig_22.g5615 Utricularia gibba
vmacro10890 Vaccinium macrocarpon
vmacro21220 Vaccinium macrocarpon
VMungo0331G1679 Vigna mungo
VMungo0647G1531 Vigna mungo
VMungo1215G1565 Vigna mungo
VMungo1309G0594 Vigna mungo
Zm00001eb045540 Zea mays
Zm00001eb279490 Zea mays

User provided reference genes

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