Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p30440 Brassica napus
A07p17130 Brassica napus
A08p16860 Brassica napus
A09p09770 Brassica napus
A09p43660 Brassica napus
Aa31LG1G15350 Aethionema arabicum
Aa31LG4G18810 Aethionema arabicum
Actinidia00445 Actinidia chinensis
Actinidia16500 Actinidia chinensis
Ah.02g124270 Amaranthus hybridus
AL3G32580 Arabidopsis lyrata
AL5G30780 Arabidopsis lyrata
AL7G16820 Arabidopsis lyrata
AL8G44650 Arabidopsis lyrata
Aqoxy5G01250 Aquilegia oxysepala
Aqoxy6G01352 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4FX07B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U0D0WT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z85DSV Arachis hypogaea
AT3G19200 Arabidopsis thaliana
AT3G50640 Arabidopsis thaliana
AT4G34419 Arabidopsis thaliana
AT5G66800 Arabidopsis thaliana
ATR0100G030 Amborella trichopoda
Atru.chr5.2728 Acer truncatum
AUR62001940 Chenopodium quinoa
AUR62003867 Chenopodium quinoa
BcaB01g00603 Brassica carinata
BcaB02g09989 Brassica carinata
BcaB04g20102 Brassica carinata
BcaB06g25976 Brassica carinata
BcaC01g00905 Brassica carinata
BcaC04g23161 Brassica carinata
BcaC06g34747 Brassica carinata
BcaC07g39525 Brassica carinata
BolC3t20870H Brassica oleracea
BolC5t33331H Brassica oleracea
BolC7t43029H Brassica oleracea
BolC8t50188H Brassica oleracea
BolC8t50190H Brassica oleracea
BolC9t54044H Brassica oleracea
BraA05t21883Z Brassica rapa
BraA07t29439Z Brassica rapa
BraA08t33650Z Brassica rapa
BraA09t36624Z Brassica rapa
BraA09t39826Z Brassica rapa
C03p85790 Brassica napus
C05p46040 Brassica napus
C07p24980 Brassica napus
C08p25730 Brassica napus
C09p11530 Brassica napus
CAN.G165.22 Capsicum annuum
CAN.G836.76 Capsicum annuum
CANSAT01G1685 Cannabis sativa
CANSAT25G1360 Cannabis sativa
CARHR094610 Cardamine hirsuta
CARHR160150 Cardamine hirsuta
CARHR242340 Cardamine hirsuta
CARHR280900 Cardamine hirsuta
Carub.0003s1903 Capsella rubella
Carub.0005s1696 Capsella rubella
Carub.0007s0589 Capsella rubella
Carub.0008s2771 Capsella rubella
Ca_18677_v3 Cicer arietinum L.
Ca_19502_v3 Cicer arietinum L.
Cc02_g18710 Coffea canephora
Cc07_g05940 Coffea canephora
CDE03G0428 Ceratophyllum demersum
CDE04G3581 Ceratophyllum demersum
Cfa005475 Carpinus fangiana
Ciclev10026611m.g Citrus clementina
Ciclev10029915m.g Citrus clementina
CiPaw.01G019100 Carya illinoinensis
CiPaw.05G051800 Carya illinoinensis
CiPaw.06G143400 Carya illinoinensis
ClCG01G016770 Citrullus lanatus
ClCG02G012800 Citrullus lanatus
ClCG05G010020 Citrullus lanatus
COL.COLO4_11399 Corchorus olitorius
COL.COLO4_32666 Corchorus olitorius
Cpa.g.sc55.162 Carica papaya
Cpa.g.sc62.20 Carica papaya
CsaV3_2G016870 Cucumis sativus L.
CsaV3_3G018550 Cucumis sativus L.
CsaV3_6G043200 Cucumis sativus L.
CSS0005083 Camellia sinensis var. sinensis
CSS0027699 Camellia sinensis var. sinensis
CSS0037574 Camellia sinensis var. sinensis
CSS0050202 Camellia sinensis var. sinensis
DCAR_022029 Daucus carota
Dinv23616 Davidia involucrata
Dinv29979 Davidia involucrata
Dinv39862 Davidia involucrata
Dinv42151 Davidia involucrata
Duzib052G0113 Durio zibethinus
Duzib147G0558 Durio zibethinus
Duzib187G0864 Durio zibethinus
Duzib248G1687 Durio zibethinus
Duzib264G0584 Durio zibethinus
ECA232G2120 Erigeron canadensis
ECA234G2959 Erigeron canadensis
EL10Ac6g15758 Beta vulgaris
Eucgr.H01652 Eucalyptus grandis
Eucgr.H02010 Eucalyptus grandis
Eucgr.I00936 Eucalyptus grandis
FAN04G0719 Fragaria x ananassa
FAN11G1855 Fragaria x ananassa
FAN12G1655 Fragaria x ananassa
FAN15G1604 Fragaria x ananassa
FAN16G2042 Fragaria x ananassa
FAN19G0517 Fragaria x ananassa
FAN20G0269 Fragaria x ananassa
FAN23G1767 Fragaria x ananassa
FAN24G3116 Fragaria x ananassa
FAN26G2469 Fragaria x ananassa
FAN27G1641 Fragaria x ananassa
FAN28G2673 Fragaria x ananassa
FvH4_1g15910 Fragaria vesca
FvH4_2g06210 Fragaria vesca
Glyma.01G185500 Glycine max
Glyma.02G133300 Glycine max
Glyma.07G211700 Glycine max
Glyma.11G056600 Glycine max
Gohir.A03G189800 Gossypium hirsutum
Gohir.A11G191400 Gossypium hirsutum
Gohir.A12G070600 Gossypium hirsutum
Gohir.D02G210400 Gossypium hirsutum
Gohir.D11G198200 Gossypium hirsutum
Gohir.D12G068500 Gossypium hirsutum
Gorai.005G238400 Gossypium raimondii
Gorai.007G212200 Gossypium raimondii
Gorai.008G074900 Gossypium raimondii
GSVIVG01022142001 Vitis vinifera
HanXRQChr04g0128221 Helianthus annuus
HanXRQChr07g0191581 Helianthus annuus
HanXRQChr10g0288991 Helianthus annuus
HanXRQChr16g0497601 Helianthus annuus
HanXRQChr16g0515091 Helianthus annuus
Haze_01829 Corylus avellana
Haze_15416 Corylus avellana
Hma1.2p1_0200F.1_g085920 Hydrangea macrophylla
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla
Hma1.2p1_0461F.1_g157900 Hydrangea macrophylla
HPP92_004231 Vanilla planifolia
HPP92_010962 Vanilla planifolia
HPP92_016727 Vanilla planifolia
Hund16331 Selenicereus undatus
Lalb_Chr05g0226601 Lupinus albus
Lalb_Chr09g0323131 Lupinus albus
Lalb_Chr09g0333771 Lupinus albus
Lalb_Chr16g0378491 Lupinus albus
Lalb_Chr16g0384661 Lupinus albus
Lj2g0015041 Lotus japonicus
Lj4C144G12 Lonicera japonica
Lj4g0009220 Lotus japonicus
Lj4g0013446 Lotus japonicus
Lsat_1_v5_gn_4_166120 Lactuca sativa
Lsat_1_v5_gn_5_112820 Lactuca sativa
Lsat_1_v5_gn_7_87020 Lactuca sativa
Manes.10G065400 Manihot esculenta
Manes.12G102900 Manihot esculenta
Manes.13G127400 Manihot esculenta
MBI06_g24647_MAGBIO Magnolia biondii
MD02G1170900 Malus domestica
MD05G1079600 Malus domestica
MD10G1093900 Malus domestica
MD15G1282400 Malus domestica
Medtr4g086340 Medicago truncatula
Medtr5g017580 Medicago truncatula
MELO3C007556.2 Cucumis melo
MELO3C019512.2 Cucumis melo
MELO3C020898.2 Cucumis melo
Migut.B00340 Erythranthe guttata
Migut.H00441 Erythranthe guttata
Migut.K00764 Erythranthe guttata
Migut.N01190 Erythranthe guttata
MSTRG.20151 Avicennia marina
MSTRG.23756 Avicennia marina
Nitab4.5_0000310g0020 Nicotiana tabacum
Nitab4.5_0000728g0040 Nicotiana tabacum
Nitab4.5_0001034g0120 Nicotiana tabacum
Nitab4.5_0002543g0060 Nicotiana tabacum
Nitab4.5_0003503g0060 Nicotiana tabacum
Nitab4.5_0005062g0030 Nicotiana tabacum
Nitab4.5_0007480g0020 Nicotiana tabacum
Nitab4.5_0023509g0010 Nicotiana tabacum
Nn1g04890 Nelumbo nucifera
Nn5g30245 Nelumbo nucifera
Oeu004830.1 Olea europaea
Oeu013702.1 Olea europaea
Os02g0762600 Oryza sativa ssp. japonica
Os08g0474100 Oryza sativa ssp. japonica
Os09g0459200 Oryza sativa ssp. japonica
Peaxi162Scf00003g02325 Petunia axillaris
Peaxi162Scf00016g01824 Petunia axillaris
Peaxi162Scf00450g00733 Petunia axillaris
PGR042G0791 Punica granatum
PGR102G2672 Punica granatum
PGR142G0732 Punica granatum
PGSC0003DMG400015780 Solanum tuberosum
PGSC0003DMG400025476 Solanum tuberosum
PGSC0003DMG400025891 Solanum tuberosum
Phvul.002G019400 Phaseolus vulgaris
Phvul.003G244300 Phaseolus vulgaris
Phvul.003G293000 Phaseolus vulgaris
Potri.004G141600 Populus trichocarpa
Potri.007G042600 Populus trichocarpa
Potri.009G102800 Populus trichocarpa
Prupe.7G134700 Prunus persica
Prupe.8G123500 Prunus persica
Psat2g166160 Pisum sativum
Psat4g087040 Pisum sativum
Psat7g124200 Pisum sativum
PSO170G0732 Papaver somniferum
PSO210G6961 Papaver somniferum
PSO541G0955 Papaver somniferum
PSO675G2615 Papaver somniferum
QL06p041771 Quercus lobata
QL11p036042 Quercus lobata
RcHm_v2.0_Chr2g0105301 Rosa chinensis
RcHm_v2.0_Chr6g0256981 Rosa chinensis
Rhsim05G0083500 Rhododendron simsii
Rhsim08G0101300 Rhododendron simsii
Sabra04G0093500 Salix brachista
Sabra07G0037800 Salix brachista
Sabra09G0078700 Salix brachista
SalBow1G7029 Salvia bowleyana
SalBow3G3738 Salvia bowleyana
SalBow6G2746 Salvia bowleyana
Sc16g0004800 Simmondsia chinensis
Sc18g0004030 Simmondsia chinensis
Sed0017415 Sechium edule
Sed0018653 Sechium edule
Sed0019145 Sechium edule
SGA_v2.0_scaffold13G06588 Striga asiatica
SGA_v2.0_scaffold204G41574 Striga asiatica
Solyc01g108170.3 Solanum lycopersicum
Solyc02g065020.2 Solanum lycopersicum
Solyc02g090720.3 Solanum lycopersicum
Sopen01g050400 Solanum pennellii
Sopen02g015150 Solanum pennellii
Sopen02g035350 Solanum pennellii
Sp2g29880 Schrenkiella parvula
Sp3g17270 Schrenkiella parvula
Sp5g11580 Schrenkiella parvula
Sp7g32210 Schrenkiella parvula
TAR376G0738 Trochodendron aralioides
TAR381G1245 Trochodendron aralioides
TAR625G1355 Trochodendron aralioides
TAR628G0915 Trochodendron aralioides
THA.LOC104819222 Tarenaya hassleriana
THA.LOC104819584 Tarenaya hassleriana
THA.LOC104821274 Tarenaya hassleriana
THA.LOC104826982 Tarenaya hassleriana
Thecc.01G054400 Theobroma cacao
Thecc.02G099600 Theobroma cacao
Thhalv10004991m.g Eutrema salsugineum
Thhalv10010961m.g Eutrema salsugineum
Thhalv10022052m.g Eutrema salsugineum
Thhalv10027139m.g Eutrema salsugineum
TPR.G21290 Trifolium pratense
TPR.G30834 Trifolium pratense
TWI09G0929 Tripterygium wilfordii
TWI75G1467 Tripterygium wilfordii
TWI79G1260 Tripterygium wilfordii
unitig_61.g26001 Utricularia gibba
unitig_736.g22377 Utricularia gibba
unitig_899.g14964 Utricularia gibba
vmacro17947 Vaccinium macrocarpon
VMungo0251G2437 Vigna mungo
VMungo1215G2639 Vigna mungo
Zm00001eb038090 Zea mays
Zm00001eb100860 Zea mays
Zm00001eb193720 Zea mays
Zm00001eb255760 Zea mays
Zm00001eb314970 Zea mays

User provided reference genes

Program Settings