Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p13700 Brassica napus
A01p18010 Brassica napus
A03p67920 Brassica napus
A09p16270 Brassica napus
Aa31LG2G130 Aethionema arabicum
Aa31LG5G12160 Aethionema arabicum
Aa31LG6G4440 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3770 Anthoceros agrestis
Actinidia02318 Actinidia chinensis
Actinidia26865 Actinidia chinensis
Actinidia32282 Actinidia chinensis
Ah.01g020940 Amaranthus hybridus
AL2G13440 Arabidopsis lyrata
AL7G26060 Arabidopsis lyrata
AL7G31270 Arabidopsis lyrata
Aqoxy6G00038 Aquilegia oxysepala
Aqoxy7G03690 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.22F4HD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.47243N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5320XR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5GE3YC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6E2F8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HDDM6R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I19T37 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UDQ3CU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UYAL3U Arachis hypogaea
AT1G62430 Arabidopsis thaliana
AT4G22340 Arabidopsis thaliana
AT4G26770 Arabidopsis thaliana
ATR0001G010 Amborella trichopoda
Atru.chr1.2473 Acer truncatum
Atru.chr2.3550 Acer truncatum
AUR62001110 Chenopodium quinoa
AUR62008934 Chenopodium quinoa
AUR62011584 Chenopodium quinoa
AUR62016397 Chenopodium quinoa
BcaB07g31326 Brassica carinata
BcaC02g10459 Brassica carinata
BcaC04g22398 Brassica carinata
BcaC04g22767 Brassica carinata
BcaC06g31901 Brassica carinata
BcaC09g51139 Brassica carinata
BcaC09g52264 Brassica carinata
BcaNung03741 Brassica carinata
BolC1t01608H Brassica oleracea
BolC1t02214H Brassica oleracea
BolC4t24406H Brassica oleracea
BolC9t54457H Brassica oleracea
BolC9t54880H Brassica oleracea
BraA01t01315Z Brassica rapa
BraA01t01756Z Brassica rapa
BraA01t02678Z Brassica rapa
BraA09t37265Z Brassica rapa
C01p16590 Brassica napus
C01p22830 Brassica napus
C04p28640 Brassica napus
C09p15520 Brassica napus
C09p15530 Brassica napus
C09p19780 Brassica napus
CAN.G1007.19 Capsicum annuum
CAN.G337.57 Capsicum annuum
CAN.G638.73 Capsicum annuum
CANSAT56G3869 Cannabis sativa
CANSAT78G1859 Cannabis sativa
CARHR049460 Cardamine hirsuta
CARHR229250 Cardamine hirsuta
CARHR234390 Cardamine hirsuta
Carub.0002s0253 Capsella rubella
Carub.0007s1407 Capsella rubella
Carub.0007s1896 Capsella rubella
Ca_00716_v3 Cicer arietinum L.
Ca_06347_v3 Cicer arietinum L.
Cc03_g04790 Coffea canephora
Cc05_g14310 Coffea canephora
CDE02G3717 Ceratophyllum demersum
CDE05G0672 Ceratophyllum demersum
Cfa000113 Carpinus fangiana
Cfa027324 Carpinus fangiana
Ciclev10015379m.g Citrus clementina
CiPaw.09G101800 Carya illinoinensis
CiPaw.10G077300 Carya illinoinensis
ClCG01G010060 Citrullus lanatus
ClCG01G010080 Citrullus lanatus
ClCG01G021510 Citrullus lanatus
COL.COLO4_09734 Corchorus olitorius
COL.COLO4_29935 Corchorus olitorius
COL.COLO4_31873 Corchorus olitorius
Cpa.g.sc284.4 Carica papaya
Cpa.g.sc3596.1 Carica papaya
Cre03.g186200 Chlamydomonas reinhardtii
CsaV3_1G018390 Cucumis sativus L.
CsaV3_6G048540 Cucumis sativus L.
CSS0009685 Camellia sinensis var. sinensis
CSS0019742 Camellia sinensis var. sinensis
CSS0024520 Camellia sinensis var. sinensis
CSS0027291 Camellia sinensis var. sinensis
CSS0039409 Camellia sinensis var. sinensis
DCAR_004881 Daucus carota
DCAR_022588 Daucus carota
DCAR_027847 Daucus carota
Dinv07395 Davidia involucrata
Dinv13963 Davidia involucrata
Dinv22231 Davidia involucrata
Dinv40794 Davidia involucrata
Duzib160G0351 Durio zibethinus
Duzib170G0035 Durio zibethinus
Duzib192G0690 Durio zibethinus
Duzib235G0061 Durio zibethinus
ECA100G0002 Erigeron canadensis
ECA246G3214 Erigeron canadensis
EL10Ac2g03273 Beta vulgaris
EL10Ac3g06199 Beta vulgaris
EL10Ac4g07691 Beta vulgaris
EL10Ac4g08525 Beta vulgaris
EL10Ac5g11190 Beta vulgaris
EL10Ac7g17627 Beta vulgaris
EL10Ac8g19511 Beta vulgaris
EL10Ac9g21959 Beta vulgaris
Eucgr.D01393 Eucalyptus grandis
Eucgr.H02887 Eucalyptus grandis
FAN21G4043 Fragaria x ananassa
FAN25G2525 Fragaria x ananassa
FvH4_3g01060 Fragaria vesca
Glyma.02G295000 Glycine max
Glyma.10G183200 Glycine max
Glyma.14G018600 Glycine max
Glyma.20G207000 Glycine max
Gohir.A01G084600 Gossypium hirsutum
Gohir.A05G174300 Gossypium hirsutum
Gohir.A06G205700 Gossypium hirsutum
Gohir.A08G024200 Gossypium hirsutum
Gohir.A10G009500 Gossypium hirsutum
Gohir.D01G071000 Gossypium hirsutum
Gohir.D05G177300 Gossypium hirsutum
Gohir.D06G215800 Gossypium hirsutum
Gohir.D08G034700 Gossypium hirsutum
Gohir.D10G009200 Gossypium hirsutum
Gorai.002G093700 Gossypium raimondii
Gorai.004G032600 Gossypium raimondii
Gorai.009G182700 Gossypium raimondii
Gorai.010G250500 Gossypium raimondii
Gorai.011G010000 Gossypium raimondii
GSVIVG01003355001 Vitis vinifera
GSVIVG01037723001 Vitis vinifera
HanXRQChr05g0129141 Helianthus annuus
HanXRQChr05g0159751 Helianthus annuus
HanXRQChr08g0233631 Helianthus annuus
HanXRQChr15g0467811 Helianthus annuus
HanXRQChr15g0470081 Helianthus annuus
HanXRQChr16g0516691 Helianthus annuus
Haze_06910 Corylus avellana
Haze_26146 Corylus avellana
Hma1.2p1_0180F.1_g079690 Hydrangea macrophylla
Hma1.2p1_4091F.1_g338260 Hydrangea macrophylla
HPP92_014226 Vanilla planifolia
HPP92_026487 Vanilla planifolia
Hund00565 Selenicereus undatus
Hund01955 Selenicereus undatus
Hund06588 Selenicereus undatus
Lalb_Chr10g0107161 Lupinus albus
Lalb_Chr15g0087961 Lupinus albus
Lalb_Chr18g0056931 Lupinus albus
Lj1A880T63 Lonicera japonica
Lj1C1239G2 Lonicera japonica
Lj2C262T11 Lonicera japonica
Lj2g0021616 Lotus japonicus
LjContig00272g0017447 Lotus japonicus
Lsat_1_v5_gn_4_62720 Lactuca sativa
Lsat_1_v5_gn_5_2481 Lactuca sativa
Lsat_1_v5_gn_7_13481 Lactuca sativa
Manes.02G225700 Manihot esculenta
Manes.03G136500 Manihot esculenta
Manes.15G066300 Manihot esculenta
Mapoly0041s0077 Marchantia polymorpha
MBI16_g42263_MAGBIO Magnolia biondii
MBI19_g29434_MAGBIO Magnolia biondii
MCO07G365 Micromonas commoda
MD05G1357100 Malus domestica
MD10G1330800 Malus domestica
Medtr2g025550 Medicago truncatula
Medtr5g093840 Medicago truncatula
MELO3C007432.2 Cucumis melo
MELO3C021695.2 Cucumis melo
Migut.G00424 Erythranthe guttata
Migut.M01707 Erythranthe guttata
Migut.N00236 Erythranthe guttata
Migut.O00723 Erythranthe guttata
MSTRG.4094 Avicennia marina
MSTRG.9928 Avicennia marina
Nitab4.5_0000436g0040 Nicotiana tabacum
Nitab4.5_0000525g0200 Nicotiana tabacum
Nitab4.5_0000984g0020 Nicotiana tabacum
Nitab4.5_0002826g0020 Nicotiana tabacum
Nitab4.5_0003331g0130 Nicotiana tabacum
Nitab4.5_0007738g0040 Nicotiana tabacum
Nn1g03341 Nelumbo nucifera
Oeu002608.1 Olea europaea
Oeu007997.2 Olea europaea
Oeu020733.1 Olea europaea
Oeu032594.1 Olea europaea
Oeu039090.1 Olea europaea
Os01g0758400 Oryza sativa ssp. japonica
Os10g0327300 Oryza sativa ssp. japonica
Peaxi162Scf00019g03123 Petunia axillaris
Peaxi162Scf00235g00732 Petunia axillaris
Peaxi162Scf00813g00017 Petunia axillaris
PGR004G1394 Punica granatum
PGSC0003DMG400001130 Solanum tuberosum
PGSC0003DMG400006111 Solanum tuberosum
PGSC0003DMG400022205 Solanum tuberosum
Phvul.008G272500 Phaseolus vulgaris
Phvul.010G071530 Phaseolus vulgaris
Potri.004G001200 Populus trichocarpa
Pp3c16_10390 Physcomitrium patens
PRCOL_00000898 Prasinoderma coloniale
Prupe.4G011700 Prunus persica
Psat1g176240 Pisum sativum
Psat2g009840 Pisum sativum
PSO063G0263 Papaver somniferum
PSO541G2317 Papaver somniferum
PSO675G1737 Papaver somniferum
PSO782G1193 Papaver somniferum
QL09p006343 Quercus lobata
RcHm_v2.0_Chr5g0001601 Rosa chinensis
RcHm_v2.0_Chr5g0050181 Rosa chinensis
Rhsim06G0223500 Rhododendron simsii
Rhsim13G0146800 Rhododendron simsii
Sabra04G0000400 Salix brachista
Sabra16G0113900 Salix brachista
SalBow2G2101 Salvia bowleyana
SalBow3G3645 Salvia bowleyana
Sc10g0005520 Simmondsia chinensis
Sc12g0008930 Simmondsia chinensis
Sed0000987 Sechium edule
Sed0009349 Sechium edule
SEGI_25936 Sequoiadendron giganteum
SGA_v2.0_scaffold101G29792 Striga asiatica
SGA_v2.0_scaffold171G38907 Striga asiatica
SGA_v2.0_scaffold308G48107 Striga asiatica
SGA_v2.0_scaffold79G25638 Striga asiatica
SMO199G0038 Selaginella moellendorffii
Solyc03g005410.4 Solanum lycopersicum
Solyc07g064960.2 Solanum lycopersicum
Solyc09g083330.3 Solanum lycopersicum
Sopen03g001430 Solanum pennellii
Sopen07g033160 Solanum pennellii
Sopen09g032250 Solanum pennellii
Sp2g02170 Schrenkiella parvula
Sp7g20460 Schrenkiella parvula
Sp7g24750 Schrenkiella parvula
TAR287G0003 Trochodendron aralioides
TAR624G0493 Trochodendron aralioides
TAR626G1716 Trochodendron aralioides
TAR627G0080 Trochodendron aralioides
TAR627G0186 Trochodendron aralioides
THA.LOC104806329 Tarenaya hassleriana
THA.LOC104817683 Tarenaya hassleriana
Thecc.06G232300 Theobroma cacao
Thecc.07G028200 Theobroma cacao
Thhalv10017526m.g Eutrema salsugineum
Thhalv10023471m.g Eutrema salsugineum
Thhalv10025118m.g Eutrema salsugineum
Thhalv10025295m.g Eutrema salsugineum
Thhalv10026913m.g Eutrema salsugineum
TPR.G1084 Trifolium pratense
TPR.G13106 Trifolium pratense
TPR.G35355 Trifolium pratense
TWI38G2384 Tripterygium wilfordii
TWI63G1403 Tripterygium wilfordii
unitig_0.g1793 Utricularia gibba
vmacro03647 Vaccinium macrocarpon
vmacro16049 Vaccinium macrocarpon
VMungo0647G1396 Vigna mungo
VMungo0720G1288 Vigna mungo
Zm00001eb098040 Zea mays
Zm00001eb152600 Zea mays
Zm00001eb370580 Zea mays

User provided reference genes

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