Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p18200 Brassica napus
A06p13460 Brassica napus
A07p38890 Brassica napus
A08p30850 Brassica napus
Aa31LG4G3100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1741 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.458 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.795 Anthoceros agrestis
Actinidia26041 Actinidia chinensis
Actinidia39093 Actinidia chinensis
Ah.02g130400 Amaranthus hybridus
AL1G29830 Arabidopsis lyrata
AL2G32430 Arabidopsis lyrata
AL3G14960 Arabidopsis lyrata
Aqoxy2G00745 Aquilegia oxysepala
Aqoxy4G02144 Aquilegia oxysepala
Aqoxy6G01773 Aquilegia oxysepala
Aqoxy6G02182 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.42AYWL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.818ZE1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FT7XYG Arachis hypogaea
AT1G17530 Arabidopsis thaliana
AT1G72750 Arabidopsis thaliana
AT3G04800 Arabidopsis thaliana
ATR0177G022 Amborella trichopoda
ATR0177G035 Amborella trichopoda
ATR0620G052 Amborella trichopoda
ATR0820G086 Amborella trichopoda
Atru.chr1.3801 Acer truncatum
Atru.chr2.791 Acer truncatum
AUR62001033 Chenopodium quinoa
AUR62004922 Chenopodium quinoa
AUR62019720 Chenopodium quinoa
AUR62035488 Chenopodium quinoa
BcaB03g12994 Brassica carinata
BcaB03g15013 Brassica carinata
BcaB05g24776 Brassica carinata
BcaC03g14244 Brassica carinata
BcaC03g15411 Brassica carinata
BcaC07g38869 Brassica carinata
BcaC08g46716 Brassica carinata
BolC2t09074H Brassica oleracea
BolC5t30298H Brassica oleracea
BolC6t39744H Brassica oleracea
BolC8t49439H Brassica oleracea
BraA02t06865Z Brassica rapa
BraA06t24498Z Brassica rapa
BraA07t31443Z Brassica rapa
BraA08t35016Z Brassica rapa
C02p30230 Brassica napus
C05p15960 Brassica napus
C06p47040 Brassica napus
C08p18070 Brassica napus
CAN.G619.9 Capsicum annuum
CAN.G862.16 Capsicum annuum
CANSAT54G1327 Cannabis sativa
CANSAT56G2943 Cannabis sativa
CARHR018130 Cardamine hirsuta
CARHR065670 Cardamine hirsuta
CARHR079050 Cardamine hirsuta
Carub.0001s1730 Capsella rubella
Carub.0002s1960 Capsella rubella
Carub.0003s0397 Capsella rubella
Ca_01225_v3 Cicer arietinum L.
Ca_02460_v3 Cicer arietinum L.
Ca_07047_v3 Cicer arietinum L.
Ca_10052_v3 Cicer arietinum L.
Ca_18281_v3 Cicer arietinum L.
Ca_23351_v3 Cicer arietinum L.
Ca_28317_v3 Cicer arietinum L.
Ca_28349_v3 Cicer arietinum L.
Ca_30670_v3 Cicer arietinum L.
Ca_31336_v3 Cicer arietinum L.
CBR_g19884 Chara braunii
Cc04_g01650 Coffea canephora
CDE06G1992 Ceratophyllum demersum
CDE07G0475 Ceratophyllum demersum
CDE11G0031 Ceratophyllum demersum
Cfa003560 Carpinus fangiana
Ciclev10002602m.g Citrus clementina
Ciclev10026570m.g Citrus clementina
CiPaw.01G222700 Carya illinoinensis
CiPaw.02G138300 Carya illinoinensis
ClCG06G009180 Citrullus lanatus
ClCG09G000820 Citrullus lanatus
COL.COLO4_15303 Corchorus olitorius
COL.COLO4_22229 Corchorus olitorius
COL.COLO4_30719 Corchorus olitorius
Cpa.g.sc117.76 Carica papaya
Cpa.g.sc25.82 Carica papaya
Cpa.g.sc25.83 Carica papaya
Cre10.g434250 Chlamydomonas reinhardtii
CsaV3_1G045620 Cucumis sativus L.
CsaV3_7G034660 Cucumis sativus L.
CsaV3_UNG004050 Cucumis sativus L.
CSS0001958 Camellia sinensis var. sinensis
CSS0018048 Camellia sinensis var. sinensis
CSS0035987 Camellia sinensis var. sinensis
DCAR_006617 Daucus carota
DCAR_009197 Daucus carota
DCAR_016133 Daucus carota
Dinv04005 Davidia involucrata
Dinv17772 Davidia involucrata
Dinv37890 Davidia involucrata
Duzib160G0296 Durio zibethinus
Duzib192G0027 Durio zibethinus
Duzib235G0017 Durio zibethinus
ECA233G1122 Erigeron canadensis
ECA233G2373 Erigeron canadensis
EL10Ac4g08601 Beta vulgaris
Eucgr.B01693 Eucalyptus grandis
Eucgr.B02109 Eucalyptus grandis
Eucgr.F03162 Eucalyptus grandis
FAN02G0191 Fragaria x ananassa
FAN02G2270 Fragaria x ananassa
FAN05G3772 Fragaria x ananassa
FAN09G1396 Fragaria x ananassa
FAN09G1590 Fragaria x ananassa
FAN14G1054 Fragaria x ananassa
FAN14G4983 Fragaria x ananassa
FvH4_6g03320 Fragaria vesca
FvH4_6g34150 Fragaria vesca
Glyma.10G161100 Glycine max
Glyma.13G347400 Glycine max
Glyma.15G026600 Glycine max
Glyma.20G223900 Glycine max
Gohir.A05G136900 Gossypium hirsutum
Gohir.A10G057400 Gossypium hirsutum
Gohir.D05G138900 Gossypium hirsutum
Gohir.D10G059200 Gossypium hirsutum
Gorai.009G143200 Gossypium raimondii
Gorai.011G063200 Gossypium raimondii
GSVIVG01016813001 Vitis vinifera
GSVIVG01035979001 Vitis vinifera
HanXRQChr10g0312361 Helianthus annuus
HanXRQChr12g0360471 Helianthus annuus
Haze_15988 Corylus avellana
Hma1.2p1_0083F.1_g042840 Hydrangea macrophylla
Hma1.2p1_0291F.1_g115430 Hydrangea macrophylla
Hma1.2p1_0496F.1_g166070 Hydrangea macrophylla
HPP92_007391 Vanilla planifolia
HPP92_015092 Vanilla planifolia
HPP92_022338 Vanilla planifolia
HPP92_022357 Vanilla planifolia
Lalb_Chr02g0148711 Lupinus albus
Lalb_Chr14g0372671 Lupinus albus
Lalb_Chr22g0351941 Lupinus albus
Lalb_Chr24g0396571 Lupinus albus
Lj3g0011203 Lotus japonicus
Lj3g0022569 Lotus japonicus
Lj4C780T7 Lonicera japonica
Lj5C40T23 Lonicera japonica
Lj5g0013303 Lotus japonicus
Lj7A488T36 Lonicera japonica
Lsat_1_v5_gn_1_60181 Lactuca sativa
Lsat_1_v5_gn_3_15620 Lactuca sativa
Lsat_1_v5_gn_4_128201 Lactuca sativa
Lsat_1_v5_gn_4_141061 Lactuca sativa
Lsat_1_v5_gn_4_154100 Lactuca sativa
Lsat_1_v5_gn_4_94780 Lactuca sativa
Lsat_1_v5_gn_5_135581 Lactuca sativa
Lsat_1_v5_gn_5_42001 Lactuca sativa
Lsat_1_v5_gn_5_74860 Lactuca sativa
Lsat_1_v5_gn_6_19920 Lactuca sativa
Lsat_1_v5_gn_7_79320 Lactuca sativa
Lsat_1_v5_gn_8_113360 Lactuca sativa
Lsat_1_v5_gn_8_54540 Lactuca sativa
Manes.04G141901 Manihot esculenta
Manes.08G132800 Manihot esculenta
Manes.09G154200 Manihot esculenta
Manes.11G023500 Manihot esculenta
Mapoly0009s0068 Marchantia polymorpha
MBI05_g12524_MAGBIO Magnolia biondii
MBI16_g41812_MAGBIO Magnolia biondii
MCO09G012 Micromonas commoda
MD08G1136500 Malus domestica
MD17G1172500 Malus domestica
Medtr1g081230 Medicago truncatula
Medtr2g099550 Medicago truncatula
Medtr8g018780 Medicago truncatula
MELO3C024672.2 Cucumis melo
Migut.D00951 Erythranthe guttata
Migut.I01050 Erythranthe guttata
MSTRG.4781 Avicennia marina
MSTRG.9508 Avicennia marina
Nitab4.5_0000189g0280 Nicotiana tabacum
Nitab4.5_0005003g0010 Nicotiana tabacum
Nitab4.5_0009641g0010 Nicotiana tabacum
Nn1g05831 Nelumbo nucifera
Nn2g11088 Nelumbo nucifera
Oeu002491.1 Olea europaea
Oeu004351.1 Olea europaea
Oeu027300.1 Olea europaea
Oeu058699.1 Olea europaea
Os02g0672500 Oryza sativa ssp. japonica
Os03g0114900 Oryza sativa ssp. japonica
Os04g0566700 Oryza sativa ssp. japonica
Os10g0519700 Oryza sativa ssp. japonica
Peaxi162Scf00038g00179 Petunia axillaris
PGR042G2560 Punica granatum
PGR102G0496 Punica granatum
PGSC0003DMG400002488 Solanum tuberosum
PGSC0003DMG400043220 Solanum tuberosum
Phvul.005G156600 Phaseolus vulgaris
Phvul.007G186600 Phaseolus vulgaris
Phvul.010G134500 Phaseolus vulgaris
Potri.001G198100 Populus trichocarpa
Potri.003G044100 Populus trichocarpa
Potri.005G051800 Populus trichocarpa
Potri.013G039200 Populus trichocarpa
Pp3c11_5340 Physcomitrium patens
Pp3c11_5350 Physcomitrium patens
Prupe.3G045100 Prunus persica
Psat4g184640 Pisum sativum
Psat5g291200 Pisum sativum
Psat6g146840 Pisum sativum
PSO017G2172 Papaver somniferum
PSO063G7117 Papaver somniferum
PSO170G1779 Papaver somniferum
PSO339G6681 Papaver somniferum
PSO384G1179 Papaver somniferum
PSO782G2013 Papaver somniferum
QL04p048919 Quercus lobata
QL05p009491 Quercus lobata
RcHm_v2.0_Chr2g0144461 Rosa chinensis
RcHm_v2.0_Chr3g0451811 Rosa chinensis
Rhsim08G0235800 Rhododendron simsii
Rhsim12G0208200 Rhododendron simsii
Sabra01G0144100 Salix brachista
Sabra03G0022300 Salix brachista
Sabra13G0036600 Salix brachista
SalBow6G1020 Salvia bowleyana
Sc09g0003840 Simmondsia chinensis
Sc12g0010400 Simmondsia chinensis
Sed0001738 Sechium edule
Sed0008580 Sechium edule
Sed0009384 Sechium edule
SEGI_02903 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33356 Striga asiatica
SGA_v2.0_scaffold68G22896 Striga asiatica
SGA_v2.0_scaffold71G23811 Striga asiatica
SHI18387 Sapria himalayana
SMO347G0485 Selaginella moellendorffii
SMO361G0436 Selaginella moellendorffii
SMO367G0198 Selaginella moellendorffii
Solyc03g121860.1 Solanum lycopersicum
Solyc10g024350.3 Solanum lycopersicum
Solyc12g049220.3 Solanum lycopersicum
Sopen03g040680 Solanum pennellii
Sopen10g009310 Solanum pennellii
Sopen12g023670 Solanum pennellii
Sp1g15670 Schrenkiella parvula
Sp5g27810 Schrenkiella parvula
TAR369G0451 Trochodendron aralioides
TAR623G0782 Trochodendron aralioides
TAR629G0789 Trochodendron aralioides
THA.LOC104808048 Tarenaya hassleriana
THA.LOC104812233 Tarenaya hassleriana
THA.LOC104822650 Tarenaya hassleriana
Thecc.06G115700 Theobroma cacao
Thhalv10008868m.g Eutrema salsugineum
Thhalv10019450m.g Eutrema salsugineum
Thhalv10021936m.g Eutrema salsugineum
TPR.G30943 Trifolium pratense
TPR.G6543 Trifolium pratense
TPR.G9783 Trifolium pratense
TWI12G0545 Tripterygium wilfordii
TWI56G0343 Tripterygium wilfordii
TWI79G0419 Tripterygium wilfordii
unitig_736.g22786 Utricularia gibba
unitig_899.g14768 Utricularia gibba
vmacro22227 Vaccinium macrocarpon
VMungo0331G0243 Vigna mungo
VMungo0720G2538 Vigna mungo
VMungo1080G1546 Vigna mungo
Zm00001eb000980 Zea mays
Zm00001eb043380 Zea mays
Zm00001eb404010 Zea mays

User provided reference genes

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