Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p27390 Brassica napus
A01p37370 Brassica napus
A05p32770 Brassica napus
A06p38390 Brassica napus
Aa31LG11G7920 Aethionema arabicum
Aa31LG2G11540 Aethionema arabicum
Aa31LG8G3960 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis
Actinidia16853 Actinidia chinensis
Actinidia40353 Actinidia chinensis
Actinidia40354 Actinidia chinensis
Ah.04g154860 Amaranthus hybridus
AL1G65930 Arabidopsis lyrata
AL3G29860 Arabidopsis lyrata
AL8G23000 Arabidopsis lyrata
Aqoxy2G02793 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4G8HI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea
AT1G56320 Arabidopsis thaliana
AT3G16890 Arabidopsis thaliana
AT5G49350 Arabidopsis thaliana
ATR0697G276 Amborella trichopoda
ATR0706G131 Amborella trichopoda
ATR0743G013 Amborella trichopoda
Atru.chr2.1158 Acer truncatum
Atru.chr2.1176 Acer truncatum
Atru.chr2.152 Acer truncatum
Atru.chr4.2965 Acer truncatum
AUR62000681 Chenopodium quinoa
AUR62005275 Chenopodium quinoa
AUR62016141 Chenopodium quinoa
AUR62016142 Chenopodium quinoa
AUR62042953 Chenopodium quinoa
AUR62043773 Chenopodium quinoa
BcaB04g20158 Brassica carinata
BcaC09g48647 Brassica carinata
BcaC09g49563 Brassica carinata
BcaNung02598 Brassica carinata
BolC1t04700H Brassica oleracea
BolC7t44514H Brassica oleracea
BraA01t02879Z Brassica rapa
BraA01t03795Z Brassica rapa
BraA05t22099Z Brassica rapa
BraA06t26753Z Brassica rapa
C01p35210 Brassica napus
C01p47300 Brassica napus
CAN.G197.15 Capsicum annuum
CAN.G197.18 Capsicum annuum
CANSAT01G1305 Cannabis sativa
CANSAT54G2708 Cannabis sativa
CARHR092170 Cardamine hirsuta
CARHR155470 Cardamine hirsuta
CARHR182180 Cardamine hirsuta
CARHR289860 Cardamine hirsuta
Carub.0002s0784 Capsella rubella
Carub.0003s1662 Capsella rubella
Carub.0008s0925 Capsella rubella
Ca_22522_v3 Cicer arietinum L.
Cc03_g01100 Coffea canephora
Cc03_g01110 Coffea canephora
CDE02G3715 Ceratophyllum demersum
Cfa006686 Carpinus fangiana
Cfa015454 Carpinus fangiana
Ciclev10003751m.g Citrus clementina
Ciclev10003857m.g Citrus clementina
Ciclev10006939m.g Citrus clementina
Ciclev10006963m.g Citrus clementina
CiPaw.01G141700 Carya illinoinensis
CiPaw.02G076500 Carya illinoinensis
CiPaw.07G028300 Carya illinoinensis
ClCG03G017700 Citrullus lanatus
ClCG05G006410 Citrullus lanatus
ClCG06G004730 Citrullus lanatus
COL.COLO4_29076 Corchorus olitorius
COL.COLO4_36843 Corchorus olitorius
Cpa.g.sc9.92 Carica papaya
CsaV3_1G038300 Cucumis sativus L.
CsaV3_3G015050 Cucumis sativus L.
CsaV3_6G022510 Cucumis sativus L.
CSS0000232 Camellia sinensis var. sinensis
CSS0013068 Camellia sinensis var. sinensis
DCAR_001718 Daucus carota
DCAR_023333 Daucus carota
DCAR_023334 Daucus carota
DCAR_027017 Daucus carota
Dinv44313 Davidia involucrata
Dinv44314 Davidia involucrata
Duzib151G0185 Durio zibethinus
Duzib151G1201 Durio zibethinus
Duzib177G0976 Durio zibethinus
ECA233G1761 Erigeron canadensis
ECA246G3411 Erigeron canadensis
EL10Ac3g04919 Beta vulgaris
EL10Ac4g09827 Beta vulgaris
Eucgr.H04030 Eucalyptus grandis
Eucgr.H04031 Eucalyptus grandis
FAN02G3556 Fragaria x ananassa
FAN02G4223 Fragaria x ananassa
FAN04G0068 Fragaria x ananassa
FAN05G3647 Fragaria x ananassa
FAN07G2635 Fragaria x ananassa
FAN09G2263 Fragaria x ananassa
FAN12G1068 Fragaria x ananassa
FAN12G3242 Fragaria x ananassa
FAN13G1854 Fragaria x ananassa
FAN14G2258 Fragaria x ananassa
FAN18G1273 Fragaria x ananassa
FvH4_4g19330 Fragaria vesca
FvH4_5g29230 Fragaria vesca
FvH4_6g07260 Fragaria vesca
Glyma.08G268300 Glycine max
Glyma.09G038800 Glycine max
Glyma.10G147900 Glycine max
Glyma.15G143900 Glycine max
Gohir.A09G064700 Gossypium hirsutum
Gohir.A10G167900 Gossypium hirsutum
Gohir.A11G272000 Gossypium hirsutum
Gohir.D02G117100 Gossypium hirsutum
Gohir.D10G174000 Gossypium hirsutum
Gohir.D11G282100 Gossypium hirsutum
Gorai.005G136500 Gossypium raimondii
Gorai.006G078600 Gossypium raimondii
Gorai.007G304800 Gossypium raimondii
Gorai.011G194700 Gossypium raimondii
Gorai.013G105500 Gossypium raimondii
GSVIVG01035038001 Vitis vinifera
HanXRQChr05g0148181 Helianthus annuus
Haze_01077 Corylus avellana
Haze_01081 Corylus avellana
Haze_04077 Corylus avellana
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla
HPP92_021761 Vanilla planifolia
HPP92_026765 Vanilla planifolia
Hund03099 Selenicereus undatus
Hund07137 Selenicereus undatus
Hund11954 Selenicereus undatus
Lalb_Chr05g0229111 Lupinus albus
Lalb_Chr18g0046061 Lupinus albus
Lalb_Chr18g0058901 Lupinus albus
Lalb_Chr20g0120971 Lupinus albus
Lj4g0020012 Lotus japonicus
Lj5g0002521 Lotus japonicus
Lj6A687G28 Lonicera japonica
Lj6A687G30 Lonicera japonica
Lj6C687T3 Lonicera japonica
Lj6C687T6 Lonicera japonica
Lj6g0008376 Lotus japonicus
Lsat_1_v5_gn_2_45680 Lactuca sativa
Lsat_1_v5_gn_6_114241 Lactuca sativa
Lsat_1_v5_gn_6_19160 Lactuca sativa
Manes.03G202000 Manihot esculenta
Manes.03G202100 Manihot esculenta
Manes.09G176000 Manihot esculenta
MBI06_g47069_MAGBIO Magnolia biondii
MBI06_g47128_MAGBIO Magnolia biondii
MBI18_g28459_MAGBIO Magnolia biondii
MD00G1073300 Malus domestica
MD04G1195000 Malus domestica
MD13G1157600 Malus domestica
MD16G1158500 Malus domestica
Medtr1g083900 Medicago truncatula
Medtr2g034760 Medicago truncatula
Medtr8g070050 Medicago truncatula
Medtr8g070060 Medicago truncatula
MELO3C006701.2 Cucumis melo
MELO3C029286.2 Cucumis melo
MELO3C035194.2 Cucumis melo
Migut.G00097 Erythranthe guttata
Migut.G00098 Erythranthe guttata
Migut.N00054 Erythranthe guttata
MSTRG.3868 Avicennia marina
MSTRG.3869 Avicennia marina
Nitab4.5_0000169g0070 Nicotiana tabacum
Nitab4.5_0000169g0080 Nicotiana tabacum
Nitab4.5_0005333g0010 Nicotiana tabacum
Nitab4.5_0005333g0030 Nicotiana tabacum
Nn3g21645 Nelumbo nucifera
Nn3g21650 Nelumbo nucifera
Nn4g25640 Nelumbo nucifera
Oeu019954.2 Olea europaea
Oeu036988.1 Olea europaea
Oeu056372.1 Olea europaea
Os01g0253800 Oryza sativa ssp. japonica
Os03g0304100 Oryza sativa ssp. japonica
Os05g0355900 Oryza sativa ssp. japonica
Os12g0557800 Oryza sativa ssp. japonica
Peaxi162Scf00065g00322 Petunia axillaris
PGR004G0577 Punica granatum
PGR142G0401 Punica granatum
PGSC0003DMG401007553 Solanum tuberosum
PGSC0003DMG403007553 Solanum tuberosum
Phvul.003G282300 Phaseolus vulgaris
Phvul.007G200600 Phaseolus vulgaris
Phvul.009G254100 Phaseolus vulgaris
Potri.005G019200 Populus trichocarpa
Potri.008G108300 Populus trichocarpa
Potri.008G108400 Populus trichocarpa
Prupe.1G002300 Prunus persica
Prupe.1G123300 Prunus persica
Prupe.6G314800 Prunus persica
Psat0s3089g0080 Pisum sativum
Psat1g159880 Pisum sativum
Psat4g114600 Pisum sativum
PSO170G5203 Papaver somniferum
PSO210G2776 Papaver somniferum
PSO761G0121 Papaver somniferum
QL02p088728 Quercus lobata
QL02p088731 Quercus lobata
QL03p018315 Quercus lobata
QL06p011459 Quercus lobata
RcHm_v2.0_Chr3g0456891 Rosa chinensis
RcHm_v2.0_Chr4g0424351 Rosa chinensis
RcHm_v2.0_Chr7g0221991 Rosa chinensis
Rhsim04G0232700 Rhododendron simsii
Rhsim04G0232800 Rhododendron simsii
Sabra05G0012900 Salix brachista
Sabra05G0025700 Salix brachista
Sabra08G0082100 Salix brachista
SalBow8G0484 Salvia bowleyana
SalBow8G2135 Salvia bowleyana
SalBow8G4791 Salvia bowleyana
Sc13g0006330 Simmondsia chinensis
Sc16g0008950 Simmondsia chinensis
Sc19g0003190 Simmondsia chinensis
Sed0015924 Sechium edule
Sed0020654 Sechium edule
Sed0022311 Sechium edule
SEGI_18637 Sequoiadendron giganteum
SEGI_31666 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08390 Striga asiatica
SHI00165 Sapria himalayana
SHI00166 Sapria himalayana
Solyc01g060250.2 Solanum lycopersicum
Solyc01g060260.4 Solanum lycopersicum
Sopen01g026450 Solanum pennellii
Sopen01g026460 Solanum pennellii
Sp2g06560 Schrenkiella parvula
Sp2g19700 Schrenkiella parvula
Sp3g15130 Schrenkiella parvula
TAR362G0953 Trochodendron aralioides
TAR365G0161 Trochodendron aralioides
TAR365G0952 Trochodendron aralioides
TAR374G0260 Trochodendron aralioides
TAR633G0381 Trochodendron aralioides
THA.LOC104816880 Tarenaya hassleriana
THA.LOC104821798 Tarenaya hassleriana
THA.LOC109116877 Tarenaya hassleriana
Thecc.04G296000 Theobroma cacao
Thecc.04G296100 Theobroma cacao
Thecc.05G321400 Theobroma cacao
Thhalv10004800m.g Eutrema salsugineum
Thhalv10022362m.g Eutrema salsugineum
Thhalv10023988m.g Eutrema salsugineum
TPR.G24811 Trifolium pratense
TPR.G2633 Trifolium pratense
TPR.G32167 Trifolium pratense
TWI09G1526 Tripterygium wilfordii
TWI73G0446 Tripterygium wilfordii
TWI73G0575 Tripterygium wilfordii
unitig_748.g7794 Utricularia gibba
unitig_748.g8711 Utricularia gibba
vmacro08072 Vaccinium macrocarpon
VMungo0251G0274 Vigna mungo
VMungo0720G0625 Vigna mungo
VMungo1309G0802 Vigna mungo
Zm00001eb014450 Zea mays
Zm00001eb028360 Zea mays
Zm00001eb127660 Zea mays
Zm00001eb285980 Zea mays

User provided reference genes

Program Settings