Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p23870 Brassica napus
A05p03440 Brassica napus
A06p07520 Brassica napus
Aa31LG1G24670 Aethionema arabicum
Aa31LG1G4130 Aethionema arabicum
Aa31LG6G9090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3181 Anthoceros agrestis
Actinidia06117 Actinidia chinensis
Actinidia08141 Actinidia chinensis
Actinidia11178 Actinidia chinensis
Actinidia11215 Actinidia chinensis
Actinidia27802 Actinidia chinensis
Ah.01g014060 Amaranthus hybridus
Ah.03g133140 Amaranthus hybridus
AL1G21570 Arabidopsis lyrata
AL4G41550 Arabidopsis lyrata
Aqoxy1G01846 Aquilegia oxysepala
Aqoxy3G01162 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.47NBR1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4X2PFC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74AMIJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HMY6FG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M6019J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RRWV3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X44LXV Arachis hypogaea
AT1G10700 Arabidopsis thaliana
AT2G42910 Arabidopsis thaliana
ATR0585G082 Amborella trichopoda
ATR0743G101 Amborella trichopoda
Atru.chr11.2116 Acer truncatum
Atru.chr11.2132 Acer truncatum
Atru.chr6.2090 Acer truncatum
AUR62005447 Chenopodium quinoa
AUR62014984 Chenopodium quinoa
AUR62024295 Chenopodium quinoa
AUR62029141 Chenopodium quinoa
AUR62029142 Chenopodium quinoa
AUR62040272 Chenopodium quinoa
BcaC02g12423 Brassica carinata
BcaC05g24957 Brassica carinata
BolC3t15215H Brassica oleracea
BolC4t22037H Brassica oleracea
BolC4t22041H Brassica oleracea
BolC5t29652H Brassica oleracea
BraA03t11603Z Brassica rapa
BraA05t19330Z Brassica rapa
BraA06t23956Z Brassica rapa
C03p28490 Brassica napus
C04p04010 Brassica napus
C05p09090 Brassica napus
CAN.G1191.1 Capsicum annuum
CAN.G585.35 Capsicum annuum
CAN.G7.21 Capsicum annuum
CANSAT01G0888 Cannabis sativa
CANSAT64G2421 Cannabis sativa
CARHR010880 Cardamine hirsuta
CARHR137980 Cardamine hirsuta
Carub.0001s1019 Capsella rubella
Carub.0004s2538 Capsella rubella
Ca_04579_v3 Cicer arietinum L.
Ca_25749_v3 Cicer arietinum L.
CBR_g55240 Chara braunii
Cc04_g15040 Coffea canephora
Cc05_g09480 Coffea canephora
Cc11_g15570 Coffea canephora
CDE02G4557 Ceratophyllum demersum
CDE06G1974 Ceratophyllum demersum
Cfa009200 Carpinus fangiana
Cfa021928 Carpinus fangiana
Ciclev10031735m.g Citrus clementina
Ciclev10032099m.g Citrus clementina
CiPaw.03G188500 Carya illinoinensis
CiPaw.04G135500 Carya illinoinensis
CiPaw.06G068700 Carya illinoinensis
ClCG05G025670 Citrullus lanatus
ClCG09G022430 Citrullus lanatus
COL.COLO4_08446 Corchorus olitorius
COL.COLO4_24247 Corchorus olitorius
Cpa.g.sc33.6 Carica papaya
Cpa.g.sc50.84 Carica papaya
Cre09.g394550 Chlamydomonas reinhardtii
CsaV3_5G031230 Cucumis sativus L.
CsaV3_6G038100 Cucumis sativus L.
CSS0039638 Camellia sinensis var. sinensis
CSS0041161 Camellia sinensis var. sinensis
CSS0042281 Camellia sinensis var. sinensis
CSS0046708 Camellia sinensis var. sinensis
DCAR_021314 Daucus carota
DCAR_024444 Daucus carota
Dinv15241 Davidia involucrata
Dinv18217 Davidia involucrata
Duzib147G0653 Durio zibethinus
Duzib251G0820 Durio zibethinus
Duzib264G1075 Durio zibethinus
Duzib268G0415 Durio zibethinus
ECA233G0836 Erigeron canadensis
ECA233G4779 Erigeron canadensis
ECA234G0826 Erigeron canadensis
EL10Ac6g13788 Beta vulgaris
EL10Ac9g22651 Beta vulgaris
Eucgr.A01976 Eucalyptus grandis
Eucgr.H02515 Eucalyptus grandis
FAN02G1629 Fragaria x ananassa
FAN05G0786 Fragaria x ananassa
FAN07G1884 Fragaria x ananassa
FAN09G3618 Fragaria x ananassa
FAN12G1207 Fragaria x ananassa
FAN12G4011 Fragaria x ananassa
FAN14G5610 Fragaria x ananassa
FAN22G0243 Fragaria x ananassa
FvH4_4g25920 Fragaria vesca
FvH4_6g38260 Fragaria vesca
Glyma.01G026800 Glycine max
Glyma.02G038000 Glycine max
Glyma.08G309300 Glycine max
Glyma.18G107000 Glycine max
Gohir.A04G136500 Gossypium hirsutum
Gohir.A05G379100 Gossypium hirsutum
Gohir.D04G036400 Gossypium hirsutum
Gohir.D04G179600 Gossypium hirsutum
Gohir.D04G179650 Gossypium hirsutum
Gorai.012G041300 Gossypium raimondii
Gorai.012G172700 Gossypium raimondii
Gorai.012G172800 Gossypium raimondii
GSVIVG01000780001 Vitis vinifera
GSVIVG01004085001 Vitis vinifera
HanXRQChr02g0047781 Helianthus annuus
HanXRQChr03g0070351 Helianthus annuus
HanXRQChr08g0208081 Helianthus annuus
HanXRQChr12g0366241 Helianthus annuus
HanXRQChr13g0392431 Helianthus annuus
HanXRQChr17g0565361 Helianthus annuus
Haze_12191 Corylus avellana
Haze_13500 Corylus avellana
Hma1.2p1_0147F.1_g065890 Hydrangea macrophylla
HPP92_008329 Vanilla planifolia
HPP92_008330 Vanilla planifolia
HPP92_024021 Vanilla planifolia
Hund06021 Selenicereus undatus
Hund12447 Selenicereus undatus
Hund12448 Selenicereus undatus
Hund25383 Selenicereus undatus
Lalb_Chr09g0326181 Lupinus albus
Lalb_Chr16g0381991 Lupinus albus
Lalb_Chr17g0348261 Lupinus albus
Lj1A618G32 Lonicera japonica
Lj2g0013907 Lotus japonicus
Lj3A1057G78 Lonicera japonica
Lj6g0001316 Lotus japonicus
Lj6g0006577 Lotus japonicus
Lsat_1_v5_gn_4_27661 Lactuca sativa
Lsat_1_v5_gn_8_150721 Lactuca sativa
Lsat_1_v5_gn_8_33281 Lactuca sativa
Manes.02G084500 Manihot esculenta
Manes.12G024200 Manihot esculenta
Mapoly0052s0033 Marchantia polymorpha
MBI10_g00735_MAGBIO Magnolia biondii
MBI10_g02378_MAGBIO Magnolia biondii
MBI10_g34770_MAGBIO Magnolia biondii
MBI10_g44229_MAGBIO Magnolia biondii
MCO07G645 Micromonas commoda
MCO08G013 Micromonas commoda
MD01G1051000 Malus domestica
MD09G1151500 Malus domestica
MD13G1098100 Malus domestica
MD16G1099000 Malus domestica
MD17G1139200 Malus domestica
Medtr5g032350 Medicago truncatula
Medtr5g033300 Medicago truncatula
Medtr5g075540 Medicago truncatula
Medtr6g007707 Medicago truncatula
MELO3C011909.2 Cucumis melo
MELO3C011962.2 Cucumis melo
MELO3C014474.2 Cucumis melo
Migut.E00195 Erythranthe guttata
Migut.M00498 Erythranthe guttata
MSTRG.13355 Avicennia marina
MSTRG.15045 Avicennia marina
MSTRG.6744 Avicennia marina
Nitab4.5_0000370g0050 Nicotiana tabacum
Nitab4.5_0001402g0010 Nicotiana tabacum
Nitab4.5_0001675g0130 Nicotiana tabacum
Nitab4.5_0002027g0200 Nicotiana tabacum
Nitab4.5_0004581g0020 Nicotiana tabacum
Nitab4.5_0006332g0010 Nicotiana tabacum
Nn3g16748 Nelumbo nucifera
Nn3g20901 Nelumbo nucifera
Nn6g34357 Nelumbo nucifera
Oeu001717.1 Olea europaea
Oeu001718.2 Olea europaea
Oeu020928.1 Olea europaea
Oeu049179.1 Olea europaea
Os01g0723600 Oryza sativa ssp. japonica
Os02g0714600 Oryza sativa ssp. japonica
Peaxi162Scf00035g02716 Petunia axillaris
Peaxi162Scf00111g00126 Petunia axillaris
Peaxi162Scf00342g00011 Petunia axillaris
PGR042G3989 Punica granatum
PGR119G2379 Punica granatum
PGSC0003DMG400013675 Solanum tuberosum
PGSC0003DMG400017346 Solanum tuberosum
PGSC0003DMG400021283 Solanum tuberosum
Phvul.002G150900 Phaseolus vulgaris
Phvul.006G033400 Phaseolus vulgaris
Potri.002G059700 Populus trichocarpa
Potri.005G202100 Populus trichocarpa
Potri.010G045000 Populus trichocarpa
Pp3c11_17900 Physcomitrium patens
Pp3c15_20540 Physcomitrium patens
Prupe.1G247200 Prunus persica
Prupe.3G173100 Prunus persica
Psat0s1853g0040 Pisum sativum
Psat2g094200 Pisum sativum
PSO063G0771 Papaver somniferum
PSO063G4349 Papaver somniferum
PSO478G4409 Papaver somniferum
PSO675G0133 Papaver somniferum
QL03p058514 Quercus lobata
QL08p044210 Quercus lobata
RcHm_v2.0_Chr2g0151521 Rosa chinensis
RcHm_v2.0_Chr4g0433381 Rosa chinensis
Rhsim06G0116000 Rhododendron simsii
Rhsim12G0041100 Rhododendron simsii
Sabra02G0048300 Salix brachista
Sabra05G0153500 Salix brachista
SalBow8G0068 Salvia bowleyana
SalBow8G2895 Salvia bowleyana
Sc06g0001520 Simmondsia chinensis
Sc14g0008700 Simmondsia chinensis
Sed0006528 Sechium edule
Sed0020935 Sechium edule
Sed0028114 Sechium edule
SEGI_04978 Sequoiadendron giganteum
SEGI_08439 Sequoiadendron giganteum
SEGI_11557 Sequoiadendron giganteum
SEGI_40756 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35239 Striga asiatica
SGA_v2.0_scaffold179G39546 Striga asiatica
SGA_v2.0_scaffold304G47913 Striga asiatica
SGA_v2.0_scaffold4G01925 Striga asiatica
SGA_v2.0_scaffold52G19151 Striga asiatica
SGA_v2.0_scaffold87G27083 Striga asiatica
SMO196G0217 Selaginella moellendorffii
Solyc04g039620.2 Solanum lycopersicum
Solyc04g039650.4 Solanum lycopersicum
Solyc07g056330.3 Solanum lycopersicum
Solyc10g007760.4 Solanum lycopersicum
Sopen04g015790 Solanum pennellii
Sopen07g029710 Solanum pennellii
Sopen10g003670 Solanum pennellii
Sp1g09400 Schrenkiella parvula
Sp4g25040 Schrenkiella parvula
TAR622G0635 Trochodendron aralioides
TAR627G0714 Trochodendron aralioides
TAR629G0204 Trochodendron aralioides
THA.LOC104802279 Tarenaya hassleriana
THA.LOC104803267 Tarenaya hassleriana
THA.LOC104809581 Tarenaya hassleriana
Thecc.01G162300 Theobroma cacao
Thecc.02G257500 Theobroma cacao
Thhalv10007773m.g Eutrema salsugineum
Thhalv10016898m.g Eutrema salsugineum
TPR.G16758 Trifolium pratense
TPR.G36763 Trifolium pratense
TPR.G38744 Trifolium pratense
TWI18G1153 Tripterygium wilfordii
TWI59G0020 Tripterygium wilfordii
TWI59G0839 Tripterygium wilfordii
unitig_21.g20869 Utricularia gibba
unitig_746.g26685 Utricularia gibba
unitig_899.g15306 Utricularia gibba
vmacro01129 Vaccinium macrocarpon
vmacro12463 Vaccinium macrocarpon
VMungo0540G2480 Vigna mungo
VMungo1215G1496 Vigna mungo
Zm00001eb154480 Zea mays
Zm00001eb188960 Zea mays
Zm00001eb252660 Zea mays
Zm00001eb442050 Zea mays

User provided reference genes

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